mass Racism Sparks Fight At Massachusetts High School Football Game, Coaches Say By www.bet.com Published On :: Tue, 21 Sep 2021 16:06:24 EDT The game had to be ended early. Full Article Sports News
mass Ryan Outerbridge Wins 8k In Massachusetts By bernews.com Published On :: Mon, 16 Sep 2024 10:55:27 +0000 Ryan Outerbridge continues his impressive form, this time racing to victory in the 8k race at the Pop Crowell Invitational in Massachusetts. Outerbridge — who recently won the 5k race at the Ron Ouellette Invitational and was named the Male Athlete of the Week by the Northeast-10 Conference — conquered the 8k course in a […] Full Article All News Sports #BermudaRoadRunning #GoodNews
mass How Did Supermassive Black Holes Get So Big, So Early? They Might Have Had a Head Start By www.universetoday.com Published On :: Mon, 11 Nov 2024 21:23:38 +0000 Supermassive Black Holes (SMBHs) can have billions of solar masses, and observational evidence suggests that all large galaxies have one at their centres. However, the JWST has revealed a foundational cosmic mystery. The powerful space telescope, with its ability to observe ancient galaxies in the first billion years after the Big Bang, has shown us … Continue reading "How Did Supermassive Black Holes Get So Big, So Early? They Might Have Had a Head Start" The post How Did Supermassive Black Holes Get So Big, So Early? They Might Have Had a Head Start appeared first on Universe Today. Full Article Black Holes Cosmology Mergers black hole seeds dark matter halo Early Universe Einstein telescope Intermediate Mass Black Hole jwst Primordial Black Holes
mass CG Completes Acquisition Of Massy United By bernews.com Published On :: Thu, 05 May 2022 14:19:32 +0000 Bermuda-based Coralisle Group [CG] has acquired a 100% interest in Massy United Insurance Ltd. of Barbados [United]. A spokesperson said, “United now operates within the Coralisle Group as CG United Insurance Ltd. [CG United]. The acquisition significantly expands CG’s presence across the Caribbean, adding 14 new markets where CG United operates. “These include Anguilla, Antigua & […] Full Article All Business News #BermudaBusiness #BusinessMergers #CGInsurance
mass iPhone SE 4 Camera Modules to Enter Mass Production Next Month By www.macrumors.com Published On :: Tue, 12 Nov 2024 02:56:32 PST Apple's camera module supplier for the upcoming iPhone SE 4 is set to begin mass production of the components in December, according to a new report coming out of Korea. Economic newspaper Ajunews reports that LG Innotek will supply the front camera module for the budget-friendly fourth-generation device. Final tests are now said to be underway, with mass production of the module following next month. The outlet reports that LG Innotek usually supplies camera modules around three months before the launch of new smartphones, which tallies with rumors of an iPhone SE 4 launch in March or April 2025. Apple analyst Ming-Chi Kuo estimates that Apple suppliers will produce around 8.6 million iPhone SE 4 units through the first quarter of next year. The sub-$500 device is expected to feature a design similar to the base iPhone 14. Rumored specifications include a 6.1-inch OLED display, Face ID, a newer A-series chip, a USB-C port, a single 48-megapixel rear camera, 8GB of RAM to support Apple Intelligence, and Apple's first in-house 5G modem. Apple released the existing iPhone SE in March 2022.Related Roundup: iPhone SEBuyer's Guide: iPhone SE (Don't Buy)Related Forum: iPhoneThis article, "iPhone SE 4 Camera Modules to Enter Mass Production Next Month" first appeared on MacRumors.comDiscuss this article in our forums Full Article iPhone SE
mass mass media cents By www.marriedtothesea.com Published On :: Thu, 24 Nov 2022 04:00:00 EST Today on Married To The Sea: mass media centsThis RSS feed is brought to you by Drew and Natalie's podcast Garbage Brain University. Our new series Everything Is Real explores the world of cryptids, aliens, quantum physics, the occult, and more. If you use this RSS feed, please consider supporting us by becoming a patron. Patronage includes membership to our private Discord server and other bonus material non-patrons never see! Full Article autogen_comic
mass Relativistic dynamics: force, mass, kinetic energy, gravitation and dark matter By blogs.scienceforums.net Published On :: Thu, 15 Jul 2021 18:25:57 +0000 Special relativity does not deal with acceleration, general relativity does not deal with non gravitational acceleration, which leave the theory of relativity imperfect. We will demonstrate some relativistic dynamical laws that specify relativistic acceleration, force and kinetic energy. Also, based on equivalence principle does gravitational mass vary with inertial mass? Newtonian kinematics defines motions of... Full Article SFN Blogs Uncategorized
mass Vivek Ramaswamy Tells DREAMers To Pound Sand On Mass Deportations By crooksandliars.com Published On :: Mon, 11 Nov 2024 22:00:01 +0000 The cruelty is the point with these disgusting excuses for human beings. Maybe they can do something about illegal immigrant Elon while they're at it. The incompetent first Trump administration got their rear ends handed to them during their last attempt to deport all of the DREAMers who were living in the United States under the Deferred Action for Childhood Arrivals program, otherwise known as DACA. Now they're ready to do it again with Trump's plans for mass deportations, that would destroy the United States' economy. Trump supporter Vivek Ramaswamy, who could end up with a job in the Trump administration, made an appearance on ABC's This Week, and was asked about whether Trump would actually follow through with his threat or not, and when host Jonathan Karl brought up the DREAMers, who were brought here as children, Ramaswamy basically told them all to pound sand. KARL: Now, obviously, Trump's promised --and you've talked a lot about this, the -- you know, mass deportation of undocumented immigrants.read more Full Article abc DACA Donald Trump DREAMers Act Jonathan Karl mass deportation This Week Vivek Ramaswamy
mass University Mass Timber Pavilion was designed by students By inhabitat.com Published On :: Fri, 11 Aug 2023 17:30:00 +0000 Nestled on the Rice University campus, amid multiple microhabitats and surrounded by green, you will see a small pavilion that looks a bit like an ancient Greek temple. But this pavilion was carefully crafted to have a modern design. It's sustainable, beautiful and an example that might just inspire campuses around the world.[...] Full Article pavilion university Cross Laminated Timber (CLT) post-format-gallery CLT mass timber Schools
mass 20 of Our Favorite Reactions to Marijuana Legalization in California, Maine, Massachusetts and Nevada By cheezburger.com Published On :: Thu, 10 Nov 2016 10:00:00 -0800 Full Article twitter news marijuana laws reactions smoking weed funny politics
mass Hot takes on an 11 year old game: Mass Effect 2 By www.aquarionics.com Published On :: Sun, 06 Jun 2021 13:12:36 +0000 I completed Mass Effect 2 a couple of days ago for the first time. This article contains spoilers… Full Article Computer Games Mass Effect
mass Trump Makes Unsupported Claim About ‘Massive CHEATING’ in Philadelphia By www.factcheck.org Published On :: Wed, 06 Nov 2024 00:34:07 +0000 Former President Donald Trump posted to social media an unsupported claim about "massive CHEATING" in Philadelphia, which he claimed had drawn the attention of law enforcement. The Philadelphia Police Department, the Philadelphia district attorney, a Republican city council member and the Pennsylvania Department of State all refuted the claim. The post Trump Makes Unsupported Claim About ‘Massive CHEATING’ in Philadelphia appeared first on FactCheck.org. Full Article FactCheck Posts 2024 elections Presidential Election 2024
mass Swedish vs. Deep Tissue – Which Massage Will Leave You More Bruised? By www.star2.org Published On :: Fri, 09 Aug 2024 11:38:09 +0000 Imagine slipping into a tranquil space, the soft aroma of essential oils filling the air, as the world outside slowly fades away. For many, this is the sanctuary sought after a long week of work or dealing with chronic pain. In that moment, whether it’s the gentle caress of a Swedish massage or the deep ... Read more The post Swedish vs. Deep Tissue – Which Massage Will Leave You More Bruised? appeared first on Star Two. Full Article Health Deep Tissue Massage Therapy professional massage Swedish massage
mass Comparing Massage and Chiropractic Care – Which Is Better? By www.star2.org Published On :: Mon, 12 Aug 2024 12:43:32 +0000 When faced with pain or discomfort, many turn to massage therapy or chiropractic care to find relief. Understanding the differences between these two approaches is crucial for making an informed decision about which treatment is best for your needs. Understanding Chiropractic Care Chiropractic care focuses on diagnosing and treating musculoskeletal issues, particularly those related to ... Read more The post Comparing Massage and Chiropractic Care – Which Is Better? appeared first on Star Two. Full Article Health Chiropractic Care Comparative Analysis Massage Massage Therapy
mass Massage Therapy for Frequent Travelers – Tips for Reducing Jet Lag By www.star2.org Published On :: Fri, 30 Aug 2024 07:03:50 +0000 Jet lag is a common issue for anyone crossing multiple time zones. While various remedies exist, massage therapy stands out as an effective, natural method to help the body adjust and recover. This guide explores how this therapy can be utilized to alleviate the symptoms of jet lag, offering practical tips and techniques that can ... Read more The post Massage Therapy for Frequent Travelers – Tips for Reducing Jet Lag appeared first on Star Two. Full Article Fitness Health flight health Jet Lag jet leg Massage
mass Scientists capture first-ever image of our galaxy’s supermassive black hole By www.pbs.org Published On :: Mon, 16 May 2022 15:28:43 +0000 The Event Horizon Telescope team has captured the first image of Sagittarius A*, the black hole at the center of the Milky Way. Full Article
mass Democrats Preparing for Massive Losses By theblacksphere.net Published On :: Tue, 05 Nov 2024 14:25:41 +0000 The following article, Democrats Preparing for Massive Losses, was first published on The Black Sphere. Trump goes into Alvin Braggs' and Letitia James' backyard, and takes a piss. And Chuck Schumer, Hillary Clinton, Kirsten Hillebrand... Continue reading Democrats Preparing for Massive Losses ... Full Article Featured Human Interest
mass Mystery tremors were from massive nine-day tsunami By www.bbc.com Published On :: Thu, 12 Sep 2024 18:17:55 GMT Scientists launched an investigation after being baffled by seismic signals picked up across the world Full Article
mass NASA Alert: Massive 'God of Chaos' Asteroid Apophis Makes Closest Pass by Earth Yet - Bizz Buzz By news.google.com Published On :: Wed, 13 Nov 2024 07:13:33 GMT NASA Alert: Massive 'God of Chaos' Asteroid Apophis Makes Closest Pass by Earth Yet Bizz BuzzNASA alert! 'God of Chaos' asteroid approaching Earth on November 13 sparks worldwide concern The Times of IndiaNasa Alert: Massive 'God of Chaos' asteroid Apophis nears earth in closest pass yet CNBCTV18Giant Meteorite To Hit Earth On November 13? What We Know News18'Astonishingly close': A colossal space rock could wreak havoc on Earth in 2029 Business Today Full Article
mass Fake News MSNBC, CNN Ratings Collapse after Trump’s Massive Win By lidblog.com Published On :: Wed, 13 Nov 2024 02:33:58 +0000 Two of the worst fake news purveyors, MSNBC and CNN, both suffered ratings bloodbaths since Donald Trump won his historic victory last week. And it couldn’t happen to any more serving networks. Let’s take the extremist, left-wing MSNBC. Take a look at this delicious drop in ratings: Major Nielsen ratings plunge at MSNBC since Trump […] The post Fake News MSNBC, CNN Ratings Collapse after Trump’s Massive Win appeared first on The Lid. Full Article Media
mass As Pepe Unchained Launch Date Nears, Analyst Makes ‘Massive’ Prediction For PEPU By readwrite.com Published On :: Tue, 12 Nov 2024 17:57:33 +0000 Continuing to set records, Pepe Unchained recently achieved a new milestone after reaching $26 million. The project’s presale has now… Continue reading As Pepe Unchained Launch Date Nears, Analyst Makes ‘Massive’ Prediction For PEPU The post As Pepe Unchained Launch Date Nears, Analyst Makes ‘Massive’ Prediction For PEPU appeared first on ReadWrite. Full Article Cryptocurrency
mass On-Air Talent Will Not Be Spared as CNN Prepares Mass Layoffs in Wake of Election: Report By www.westernjournal.com Published On :: Tue, 12 Nov 2024 23:36:38 +0000 CNN reportedly will be making more cuts in the near future, including to its highly paid on-air personalities, following poor election ratings. The New York Post reported that Fox News […] The post On-Air Talent Will Not Be Spared as CNN Prepares Mass Layoffs in Wake of Election: Report appeared first on The Western Journal. Full Article News 2024 election CNN Entertainment Establishment media Liberal media Media bias Politics Television
mass Why burning biomass is not zero-carbon By www.chathamhouse.org Published On :: Mon, 17 Oct 2022 14:02:50 +0000 Why burning biomass is not zero-carbon Explainer Video NCapeling 17 October 2022 Short animation explaining why burning biomass produces more carbon dioxide per unit of energy generated than almost all fossil fuels. The climate emergency requires countries to transition away from fossil fuels, but it is important to be careful about the alternative energy sources chosen. In particular, concern is growing over the use of biomass for energy, which is generated when wood or other plant material is burnt to generate heat and electricity. Many governments treat biomass energy as zero-carbon at the point of combustion, and subsidize it in the same way as renewables such as solar or wind, resulting in a large increase in the use of biomass for energy in the UK and the European Union (EU) over the past 15 years. The treatment of biomass as zero-carbon in policy frameworks rests on the argument that biomass emissions will be reabsorbed by forest growth, particularly from trees planted to replace those cut down to burn. But growing trees to maturity takes many years and, depending on the feedstock used, biomass burning increases global warming for decades to centuries. This is called the ‘carbon payback period’ – the time it takes for carbon dioxide levels to return to what they would have been if biomass had not been used. New research from Chatham House and the Woodwell Climate Research Center calculated the real climate impact of burning US wood pellets in the UK and EU. In 2019, according to this analysis, US-sourced pellets burned for energy in the UK were responsible for between 13 million and 16 million tonnes of carbon dioxide, equivalent to the annual greenhouse gas emissions from 6-7 million passenger vehicles. But because biomass is treated as zero-carbon, almost none of these emissions were included in the UK’s national greenhouse gas reports. And the removal of forest carbon from US forests is not included accurately in US reports, either. Full Article
mass Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach By www.mcponline.org Published On :: 2014-03-01 Steven A. CarrMar 1, 2014; 13:907-917Technological Innovation and Resources Full Article
mass Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation By www.mcponline.org Published On :: 2015-03-01 Michal Bassani-SternbergMar 1, 2015; 14:658-673Research Full Article
mass In Vivo Identification of Human Small Ubiquitin-like Modifier Polymerization Sites by High Accuracy Mass Spectrometry and an in Vitro to in Vivo Strategy By www.mcponline.org Published On :: 2008-01-01 Ivan MaticJan 1, 2008; 7:132-144Research Full Article
mass Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution By www.mcponline.org Published On :: 2007-12-01 Hasmik KeshishianDec 1, 2007; 6:2212-2229Research Full Article
mass Time-resolved Mass Spectrometry of Tyrosine Phosphorylation Sites in the Epidermal Growth Factor Receptor Signaling Network Reveals Dynamic Modules By www.mcponline.org Published On :: 2005-09-01 Yi ZhangSep 1, 2005; 4:1240-1250Research Full Article
mass Parallel Reaction Monitoring for High Resolution and High Mass Accuracy Quantitative, Targeted Proteomics By www.mcponline.org Published On :: 2012-11-01 Amelia C. PetersonNov 1, 2012; 11:1475-1488Technological Innovation and Resources Full Article
mass Quantitative Mass Spectrometric Multiple Reaction Monitoring Assays for Major Plasma Proteins By www.mcponline.org Published On :: 2006-04-01 Leigh AndersonApr 1, 2006; 5:573-588Research Full Article
mass The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra By www.mcponline.org Published On :: 2007-09-01 Ignat V. ShilovSep 1, 2007; 6:1638-1655Technology Full Article
mass Parts per Million Mass Accuracy on an Orbitrap Mass Spectrometer via Lock Mass Injection into a C-trap By www.mcponline.org Published On :: 2005-12-01 Jesper V. OlsenDec 1, 2005; 4:2010-2021Technology Full Article
mass The positive mass theorem and distance estimates in the spin setting By www.ams.org Published On :: Thu, 31 Oct 2024 16:22 EDT Simone Cecchini and Rudolf Zeidler Trans. Amer. Math. Soc. 377 (), 5271-5288. Abstract, references and article information Full Article
mass On the Hawking mass for CMC surfaces in positive curved 3-manifolds By www.ams.org Published On :: Tue, 05 Nov 2024 15:05 EST Luiz Ricardo Abreu Melo Proc. Amer. Math. Soc. 152 (), 5373-5380. Abstract, references and article information Full Article
mass A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis [Protein Structure and Folding] By www.jbc.org Published On :: 2020-12-18T00:06:18-08:00 Broad-specificity glycoside hydrolases (GHs) contribute to plant biomass hydrolysis by degrading a diverse range of polysaccharides, making them useful catalysts for renewable energy and biocommodity production. Discovery of new GHs with improved kinetic parameters or more tolerant substrate-binding sites could increase the efficiency of renewable bioenergy production even further. GH5 has over 50 subfamilies exhibiting selectivities for reaction with β-(1,4)–linked oligo- and polysaccharides. Among these, subfamily 4 (GH5_4) contains numerous broad-selectivity endoglucanases that hydrolyze cellulose, xyloglucan, and mixed-linkage glucans. We previously surveyed the whole subfamily and found over 100 new broad-specificity endoglucanases, although the structural origins of broad specificity remained unclear. A mechanistic understanding of GH5_4 substrate specificity would help inform the best protein design strategies and the most appropriate industrial application of broad-specificity endoglucanases. Here we report structures of 10 new GH5_4 enzymes from cellulolytic microbes and characterize their substrate selectivity using normalized reducing sugar assays and MS. We found that GH5_4 enzymes have the highest catalytic efficiency for hydrolysis of xyloglucan, glucomannan, and soluble β-glucans, with opportunistic secondary reactions on cellulose, mannan, and xylan. The positions of key aromatic residues determine the overall reaction rate and breadth of substrate tolerance, and they contribute to differences in oligosaccharide cleavage patterns. Our new composite model identifies several critical structural features that confer broad specificity and may be readily engineered into existing industrial enzymes. We demonstrate that GH5_4 endoglucanases can have broad specificity without sacrificing high activity, making them a valuable addition to the biomass deconstruction toolset. Full Article
mass Stoichiometry of Nucleotide Binding to Proteasome AAA+ ATPase Hexamer Established by Native Mass Spectrometry By www.mcponline.org Published On :: 2020-12-01 Yadong YuDec 1, 2020; 19:1997-2014Research Full Article
mass Multi-sample mass spectrometry-based approach for discovering injury markers in chronic kidney disease By www.mcponline.org Published On :: 2020-12-20 Ji Eun KimDec 20, 2020; 0:RA120.002159v1-mcp.RA120.002159Research Full Article
mass Kinome Profiling of Primary Endometrial Tumors Using Multiplexed Inhibitor Beads and Mass Spectrometry Identifies SRPK1 as Candidate Therapeutic Target By www.mcponline.org Published On :: 2020-12-01 Alison M. KurimchakDec 1, 2020; 19:2068-2089Research Full Article
mass Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS1) and in Silico Peptide Mass Libraries By www.mcponline.org Published On :: 2020-12-01 Peter LaschDec 1, 2020; 19:2125-2138Technological Innovation and Resources Full Article
mass Imaging Mass Spectrometry and Lectin Analysis of N-linked Glycans in Carbohydrate Antigen Defined Pancreatic Cancer Tissues By www.mcponline.org Published On :: 2020-11-24 Colin T. McDowellNov 24, 2020; 0:RA120.002256v1-mcp.RA120.002256Research Full Article
mass Accelerating the field of epigenetic histone modification through mass spectrometry-based approaches By www.mcponline.org Published On :: 2020-11-17 Congcong LuNov 17, 2020; 0:R120.002257v1-mcp.R120.002257Review Full Article
mass Spatial profiling of gangliosides in mouse brain by mass spectrometry imaging By www.jlr.org Published On :: 2020-12-01 Douglas A. AndresDec 1, 2020; 61:1537-1537Images in Lipid Research Full Article
mass Lipid signature of advanced human carotid atherosclerosis assessed by mass spectrometry imaging By www.jlr.org Published On :: 2020-12-23 Astrid M. MoermanDec 23, 2020; 0:jlr.RA120000974v1-jlr.RA120000974Research Articles Full Article
mass Mass spectrometry characterization of light chain fragmentation sites in cardiac AL amyloidosis: insights into the timing of proteolysis [Genomics and Proteomics] By www.jbc.org Published On :: 2020-12-04T00:06:05-08:00 Amyloid fibrils are polymeric structures originating from aggregation of misfolded proteins. In vivo, proteolysis may modulate amyloidogenesis and fibril stability. In light chain (AL) amyloidosis, fragmented light chains (LCs) are abundant components of amyloid deposits; however, site and timing of proteolysis are debated. Identification of the N and C termini of LC fragments is instrumental to understanding involved processes and enzymes. We investigated the N and C terminome of the LC proteoforms in fibrils extracted from the hearts of two AL cardiomyopathy patients, using a proteomic approach based on derivatization of N- and C-terminal residues, followed by mapping of fragmentation sites on the structures of native and fibrillar relevant LCs. We provide the first high-specificity map of proteolytic cleavages in natural AL amyloid. Proteolysis occurs both on the LC variable and constant domains, generating a complex fragmentation pattern. The structural analysis indicates extensive remodeling by multiple proteases, largely taking place on poorly folded regions of the fibril surfaces. This study adds novel important knowledge on amyloid LC processing: although our data do not exclude that proteolysis of native LC dimers may destabilize their structure and favor fibril formation, the data show that LC deposition largely precedes the proteolytic events documentable in mature AL fibrils. Full Article
mass Lipid signature of advanced human carotid atherosclerosis assessed by mass spectrometry imaging [Research Articles] By www.jlr.org Published On :: 2020-12-23T12:30:44-08:00 Carotid atherosclerosis is a risk factor for ischemic stroke, one of the main causes of mortality and disability worldwide. The disease is characterized by plaques, heterogeneous deposits of lipids and necrotic debris in the vascular wall, which grow gradually and may remain asymptomatic for decades. However, at some point a plaque can evolve to a high-risk plaque phenotype, which may trigger a cerebrovascular event. Lipids play a key role in the development and progression of atherosclerosis, but the nature of their involvement is not fully understood. Using matrix-assisted laser desorption/ionization mass spectrometry imaging, we visualized the distribution of approximately 200 different lipid signals, originating of > 90 uniquely assigned species, in 106 tissue sections of 12 human carotid atherosclerotic plaques. We performed unsupervised classification of the mass spectrometry dataset, as well as a histology-directed multivariate analysis. These data allowed us to extract the spatial lipid patterns associated with morphological plaque features in advanced plaques from a symptomatic population, revealing spatial lipid patterns in atherosclerosis and their relation to histological tissue type. The abundances of sphingomyelin and oxidized cholesteryl ester species were elevated specifically in necrotic intima areas, while diacylglycerols and triacylglycerols were spatially correlated to areas containing the coagulation protein fibrin. These results demonstrate a clear co-localization between plaque features and specific lipid classes, as well as individual lipid species in high-risk atherosclerotic plaques. Full Article
mass Spatial profiling of gangliosides in mouse brain by mass spectrometry imaging [Images In Lipid Research] By www.jlr.org Published On :: 2020-12-01T00:05:39-08:00 Full Article
mass Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface [Review] By www.mcponline.org Published On :: 2020-09-01T00:05:24-07:00 Recent efforts in gut microbiome studies have highlighted the importance of explicitly describing the ecological processes beyond correlative analysis. However, we are still at the early stage of understanding the organizational principles of the gut ecosystem, partially because of the limited information provided by currently used analytical tools in ecological modeling practices. Proteomics and metaproteomics can provide a number of insights for ecological studies, including biomass, matter and energy flow, and functional diversity. In this Mini Review, we discuss proteomics and metaproteomics-based experimental strategies that can contribute to studying the ecology, in particular at the mucosal-luminal interface (MLI) where the direct host-microbiome interaction happens. These strategies include isolation protocols for different MLI components, enrichment methods to obtain designated array of proteins, probing for specific pathways, and isotopic labeling for tracking nutrient flow. Integration of these technologies can generate spatiotemporal and site-specific biological information that supports mathematical modeling of the ecosystem at the MLI. Full Article
mass Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry [Research] By www.mcponline.org Published On :: 2020-10-01T00:05:25-07:00 Ion mobility separates molecules in the gas-phase based on their physico-chemical properties, providing information about their size as collisional cross-sections. The timsTOF Pro combines trapped ion mobility with a quadrupole, collision cell and a TOF mass analyzer, to probe ions at high speeds with on-the-fly fragmentation. Here, we show that on this platform ion mobility is beneficial for cross-linking MS (XL-MS). Cross-linking reagents covalently link amino acids in proximity, resulting in peptide pairs after proteolytic digestion. These cross-linked peptides are typically present at low abundance in the background of normal peptides, which can partially be resolved by using enrichable cross-linking reagents. Even with a very efficient enrichable cross-linking reagent, like PhoX, the analysis of cross-linked peptides is still hampered by the co-enrichment of peptides connected to a partially hydrolyzed reagent – termed mono-linked peptides. For experiments aiming to uncover protein-protein interactions these are unwanted byproducts. Here, we demonstrate that gas-phase separation by ion mobility enables the separation of mono-linked peptides from cross-linked peptide pairs. A clear partition between these two classes is observed at a CCS of 500 Å2 and a monoisotopic mass of 2 kDa, which can be used for targeted precursor selection. A total of 50-70% of the mono-linked peptides are prevented from sequencing, allowing the analysis to focus on sequencing the relevant cross-linked peptide pairs. In applications to both simple proteins and protein mixtures and a complete highly complex lysate this approach provides a substantial increase in detected cross-linked peptides. Full Article
mass Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiae Protein Complexes [Research] By www.mcponline.org Published On :: 2020-11-01T00:05:37-07:00 Co-fractionation MS (CF-MS) is a technique with potential to characterize endogenous and unmanipulated protein complexes on an unprecedented scale. However this potential has been offset by a lack of guidelines for best-practice CF-MS data collection and analysis. To obtain such guidelines, this study thoroughly evaluates novel and published Saccharomyces cerevisiae CF-MS data sets using very high proteome coverage libraries of yeast gold standard complexes. A new method for identifying gold standard complexes in CF-MS data, Reference Complex Profiling, and the Extending 'Guilt-by-Association' by Degree (EGAD) R package are used for these evaluations, which are verified with concurrent analyses of published human data. By evaluating data collection designs, which involve fractionation of cell lysates, it is found that near-maximum recall of complexes can be achieved with fewer samples than published studies. Distributing sample collection across orthogonal fractionation methods, rather than a single high resolution data set, leads to particularly efficient recall. By evaluating 17 different similarity scoring metrics, which are central to CF-MS data analysis, it is found that two metrics rarely used in past CF-MS studies – Spearman and Kendall correlations – and the recently introduced Co-apex metric frequently maximize recall, whereas a popular metric—Euclidean distance—delivers poor recall. The common practice of integrating external genomic data into CF-MS data analysis is also evaluated, revealing that this practice may improve the precision and recall of known complexes but is generally unsuitable for predicting novel complexes in model organisms. If studying nonmodel organisms using orthologous genomic data, it is found that particular subsets of fractionation profiles (e.g. the lowest abundance quartile) should be excluded to minimize false discovery. These assessments are summarized in a series of universally applicable guidelines for precise, sensitive and efficient CF-MS studies of known complexes, and effective predictions of novel complexes for orthogonal experimental validation. Full Article
mass High-dimensional Cytometry (ExCYT) and Mass Spectrometry of Myeloid Infiltrate in Clinically Localized Clear Cell Renal Cell Carcinoma Identifies Novel Potential Myeloid Targets for Immunotherapy [Research] By www.mcponline.org Published On :: 2020-11-01T00:05:37-07:00 Renal Cell Carcinoma (RCC) is one of the most commonly diagnosed cancers worldwide with research efforts dramatically improving understanding of the biology of the disease. To investigate the role of the immune system in treatment-naïve clear cell Renal Cell Carcinoma (ccRCC), we interrogated the immune infiltrate in patient-matched ccRCC tumor samples, benign normal adjacent tissue (NAT) and peripheral blood mononuclear cells (PBMCs isolated from whole blood, focusing our attention on the myeloid cell infiltrate. Using flow cytometric, MS, and ExCYT analysis, we discovered unique myeloid populations in PBMCs across patient samples. Furthermore, normal adjacent tissues and ccRCC tissues contained numerous myeloid populations with a unique signature for both tissues. Enrichment of the immune cell (CD45+) fraction and subsequent gene expression analysis revealed a number of myeloid-related genes that were differentially expressed. These data provide evidence, for the first time, of an immunosuppressive and pro-tumorigenic role of myeloid cells in early, clinically localized ccRCC. The identification of a number of immune proteins for therapeutic targeting provides a rationale for investigation into the potential efficacy of earlier intervention with single-agent or combination immunotherapy for ccRCC. Full Article