Full Schedule
Proceedings

Best quote: Librarians are like Mr. Paperclip from MS Office - we pop up when you least expect it and try to offer to you help...

This conference focused on the science library's role in supporting e-science and integrating into research collaborations and science departments. There was a mixture of speakers: government, library and institute directors, and a few librarians. The presentations were a mixture of big picture descriptions and some concrete examples. I felt like there wasn't as much hard solutions that we could take back to the library and implement, but perhaps just educating the library community on how radically different e-science is changing the research landscape is the necessary first step.

I've included the highlights from my session notes below (let me know if you'd like the see my full notes in gory detail). Check out the proceedings link above for powerpoint and document files for most of the speakers.

As a side note, our poster about GatorScholar was well-received with many people already aware of the project from either Val's USAIN presentations, the SLA poster, or from hearing about Cornell's project. Medha Devare was one of the panel reactors and she mentioned our collaboration in her presentation. Most of the poster visitors seemed very interested in starting their own version and perhaps at some point we'll have a network of databases.

Thursday

E-Science: Trends, Transformations & Responses

Convener and Moderator: Wendy Lougee, University of Minnesota
Speaker: Chris Greer, Director, National Coordination Office

2. A Case Study in E-Science: Building Ecological Informatics Solutions for Multi-Decadal Research

William Michener, Research Professor (Biology) and Associate Director, Long-Term Ecological Research Network Office, University of New Mexico


3. Rick Luce, Vice Provost and Director of University Libraries, Emory University Libraries

"Making a Quantum Leap to eResearch Support: a new world of opportunities and challenges for research libraries"


Wendy Lougee

Pitfalls: not to fall back on traditional roles, currently we don't respond to multi-institutional collaborations, our boundaries stop with the institution

We need to understand scientists' workflows, need to identify strategies for embedding librarians into project teams. We need to think about core expertise of librarians, reimaging roles of librarians

What do we do to build this collaborative action? We need to think outside the box.

Data Curation: Issues and Challenges

Convener and Moderator: James Mullins, Dean of Libraries, Purdue University

• Liz Lyon, Director, UKOLN

Transition or Transform? Repositiioning the Library for the Petabyte Era

How can libraries work with science (in a very general sense)?

1. Transition or Transform? Need to become embedded and integrated into team science. Many different models of engagement

Geosciences pilot where the library worked with the Geological department to curate their datasets (Edinborough):
Found: Time needed is longer than anticipated, inventory doesn't have to be comprehensive, little documentation exists
Outcomes: positive, requirement for researcher and auditor training, need to develop a data policy

2. Lots of opportunities of action: leadership by senior managers, faculty coordination, advocacy & tranining, data documentation best practices

People and Skills: there are not enough specialised data librarians. In UK 5 data librarians. Need to bring diverse communities together - facilitate cooperation between organizations and individuals.

Open science: new range of areas where results are being put onto the web (GalaxyZoo eg.) Librarians need to be aware of implications.

3. Need multidisciplinary teams and people in library, huge skill shortage, need to find core data skills and integrate it into the LIS curriculum. Recruit different people to the LIS team, rebrand the LIS career. Go from librarianship to Informatics.

• Fran Berman, Director of the San Diego Supercomputer Center, UC San Diego, and Co-chair Blue Ribbon Task Force on Sustainable Digital Preservation and Access

"Research and Data"

Researchers are detectives, shows different major questions (SAF, Brown Dwarfs, bridge stress, Income dynamics over 40 years, Disease spread-Protein Data Bank) - key collections all over.

CI Support: all these issues are crucial. researchers want a easy to use set of tools to make the most of their data.

She finds different preservation profiles: timescale, datascale, well-tended to poor, level of policy restrictions, planned vs. ad hoc approach

Researchers focused on new projects, customization of solutions to problems, collaboration

Researchers need help: developing management, preservation and use environments, proper curation and annotation, navigating policy, regulation, IP, sustainability

Questions about preservation: what should we save and who should pay for it? Just saving everything isn't an option. 2007 was the crossover year - digital data exceeded the amount of available storage. What do we want to save? Who is we?
Society: official and historically valuable data, Fed agency or inst normally takes part.
Research community: PDB, NVO.
Me: medical record, financial data, digital photos - real commercial market for preservation solutions.

What do we have to save?
private sector: HIPAA, Sarbanes-Oxley,
OMB regulations for fed funded research data (3 years, not always easy to do).

Economics: many costs associated with preservation. Maintenance upkeep, software, utilities, space, networking, security, etc.

UCSD forged partnership with library. Trying to create a preservation grid with formal policies, nationwide grid with other institutions.

Panel Responders:

• Sayeed Choudhury, Associate Dean of University Libraries and Hodson Director of the Digital Research and Curation Center, Johns Hopkins University

Data Curation Issues and Challenges:

It makes sense to help scientists deal with public and higher levels of data, not the raw data.

Considerations: need to work within their systems, consider gateways for systems as part of infrastructure development (think about railroad gauge), focus on both human and tech components of infrastructure, human interoperability is more difficult than tech interoperability, trust is key!

Questions: What about the cloud or the crowd? Can Flickr help us with data curation? What are the fundamental differences between data and collections? Human readable vs. machine readable? How do we transfer principles into new practices? What are we trying to sustain? Data? Scholarship? Our organizations?


Supporting Virtual Orgs

• Thomas A. Finholt, Director, Collaboratory for Research on Electronic Work (CREW) and Research Professor & Associate Dean for Research and Innovation, School of Information, University of Michigan

Changing nature of geographically-distributed collaboration:

history: transition in terms of distributed work. Much of what came before (collaboratory, video conf) had a precedent but new emerging has no precedent (crowdsourcing, VO's), no traditional context leaves us a bit adrift.

Lesson 1: anticipate cultural differences.
Domain scientists: characteristics: power distance (bias toward seniority, hierarchical), individualist(solo PI, individual genius), masculine(adversial and competitive), uncertainty avoidance
CI developers: power distance (bias toward talent, egalitarian), collectivist(project model), masculine, embrace risk

Lesson 2: plan for first contact.

It can be tough to recognize successful innovations: first efforts are often awkward hybrids



Crowdsourcing: idea that we send out challenges and solutions come to us (ex. Innocentive website, Games with a Purpose). We don't know who is going to do the work, effort is contributed voluntarily -> incentives are important to motivate work

Delegation of organizational work: people can count on organizations to do some of the basic policy work. Much attention has focused on technology and processes to support social ties, alternative course is the use of technology to supplant social ties - > think of this as organizing without the work of organizing, questions of who to trust, who pays, permitted to use the resources are managed by middleware.

Group work is an inevitable fact of org life.

• Medha Devare, Life Sciences and Bioinformatics Librarian, Mann Library, Cornell University

Idea of Virtual Organization: boundary crossing, pooling of competencies, participants or activities geographically separated, fluid, flat structure, participant equality

Library contributions: technology choices, tools; tech support/guidance; subject expertise; understanding of research landscape; vision - user needs of the future?

Examples of library support: VIVO, DataStar (supports data-sharing among researchers)

DataStar: Data Staging Repository: supports data sharing, esp during research process, promotes publishing or archiving to discipline specific data centers and/or to Cornell's DR. Nascent stage

Reinventing the library? Librarians as middle-ware to facilitate process of connecting and creating coherence across disciplines - both VIVO and DataStar aid this.

Hope that both tools seamlessly interact with each other.


D. Scott Brandt, Associate Dean for Research, Purdue University Library

Tries to embed librarians in research teams. We have to redefine what we do, collect.

Their part in fostering knowledge is invaluable

Westminster : Nichols and Sons, 25 Parliament Street, MDCCCLXXXV [1885]

A PIL petition complains about the dilapidated condition of the building and seeks a direction to authorities to construct a new one in its place.

Such screens could yield protein drugs with advantages over natural ones

The final total of books gifted to Ballou Library via the October Book Fair & Cyber Monday  holiday shopping (which continued all week), comes in just over 200 titles! Thank you so much for buying books and helping to spread the word for this DC high school!

The wish list remains open year-round and there are a ton of great books on it, all of them chosen and approved by Ballou students. These are books the teens want and we so enjoy doing everything we can to get these books to them.

In the coming days I will be moving things around a bit on the list, getting series books together so they are easier to find. (I really really REALLY wish that amazon had "search by title" and "search by author" functions. So frustrating!) And we will, of course, be continuing to assist Ballou to fill its shelves next year and hope that you will return to the list and also help us spread the word about the amazing work done by librarian Melissa Jackson.

Have a lovely holiday folks, and thanks again for all you do to support this high school library.

The circulation desk at Delft University of Technology. I'm Jealous.

The OM Mozambique team builds a library in Mocuba to support and provide resources for the local community.

Palo Alto, CA – Aha™ by HARMAN today announced new content available via the free Aha Radio app for Android and iOS and included in the in-vehicle infotainment system in over 40 models of cars. With the addition of self-improvement publisher Hay House, live podcast network BlogTalkRadio and leading national broadcasters American Public Media (APM) and CBC/Radio-Canada, Aha adds thousands of new programs, across a multitude of genres, extending its content library of 40,000 audio and non-audio programs to include exactly what consumers want to hear in the car, at home, and on the go.Specific offerings include APM’s business and economic news program Marketplace, AAA station The Current, Classical Minnesota Public Radio and regional news from Southern California Public Radio and Minnesota Public Radio.

Archives, Room Use Only - Z5831.R66 1994

Archives, Room Use Only - ZTK143.N532

Archives, Room Use Only - QC21.L53 1827b

When a programmer thinks "I've got some code that will make others' lives easier", there are two forms that can take: a library, or a framework.

Calibration of area detectors from powder diffraction standards is widely used at synchrotron beamlines. From a single diffraction image, it is not possible to determine both the sample-to-detector distance and the wavelength, but, with images taken from multiple positions along the beam direction and where the relative displacement is known, the sample-to-detector distance and wavelength can both be determined with good precision. An example calibration using the GSAS-II software package is presented.

This article presents an overview of the development of two basic software libraries for image manipulation and data visualization in cryo-EM: emcore and emvis.

The analysis of large structural databases reveals general features and relationships among proteins, providing useful insight. A different approach is required to characterize ubiquitous secondary-structure elements, where flexibility is essential in order to capture small local differences. The ALEPH software is optimized for the analysis and the extraction of small protein folds by relying on their geometry rather than on their sequence. The annotation of the structural variability of a given fold provides valuable information for fragment-based molecular-replacement methods, in which testing alternative model hypotheses can succeed in solving difficult structures when no homology models are available or are successful. ARCIMBOLDO_BORGES combines the use of composite secondary-structure elements as a search model with density modification and tracing to reveal the rest of the structure when both steps are successful. This phasing method relies on general fold libraries describing variations around a given pattern of β-sheets and helices extracted using ALEPH. The program introduces characteristic vectors defined from the main-chain atoms as a way to describe the geometrical properties of the structure. ALEPH encodes structural properties in a graph network, the exploration of which allows secondary-structure annotation, decomposition of a structure into small compact folds, generation of libraries of models representing a variation of a given fold and finally superposition of these folds onto a target structure. These functions are available through a graphical interface designed to interactively show the results of structure manipulation, annotation, fold decomposition, clustering and library generation. ALEPH can produce pictures of the graphs, structures and folds for publication purposes.

Image-processing software has always been an integral part of structure determination by cryogenic electron microscopy (cryo-EM). Recent advances in hardware and software are recognized as one of the key factors in the so-called cryo-EM resolution revolution. Increasing computational power has opened many possibilities to consider more demanding algorithms, which in turn allow more complex biological problems to be tackled. Moreover, data processing has become more accessible to many experimental groups, with computations that used to last for many days at supercomputing facilities now being performed in hours on personal workstations. All of these advances, together with the rapid expansion of the community, continue to pose challenges and new demands on the software-development side. In this article, the development of emcore and emvis, two basic software libraries for image manipulation and data visualization in cryo-EM, is presented. The main goal is to provide basic functionality organized in modular components that other developers can reuse to implement new algorithms or build graphical applications. An additional aim is to showcase the importance of following established practices in software engineering, with the hope that this could be a first step towards a more standardized way of developing and distributing software in the field.

Puffer fish (Tetraodontidae) are masters of self-defense. When threatened they blow up like a balloon. Not only does this make them harder to swallow, but […]

The post Puffer fish voucher library appeared first on Smithsonian Insider.

To download the free e-book Best of Both Worlds: Museums, Libraries, and Archives in a Digital Age, by G. Wayne Clough, Secretary of the Smithsonian, […]

The post Smithsonian secretary on the future of museums, libraries and archives appeared first on Smithsonian Insider.

Tucked away on the lower levels of the Smithsonian’s National Museum of Natural History and National Museum of American History are some of science’s most […]

The post Smithsonian Libraries’ rare texts include early superstars of science appeared first on Smithsonian Insider.

Washington, D.C. is a city of symbols. The rites, rituals, and places that define Washington capture the aspirations of our nation and its citizens. Just […]

The post Trusted Sources: Why Museums and Libraries Are More Relevant Than Ever appeared first on Smithsonian Insider.

Smithsonian Institution Libraries has recently acquired a rare first edition of Darwin's Geological Observations on the Volcanic Islands, Visited During the Voyage of the H.M.S. Beagle.

The post With 1844 first edition, Smithsonian Libraries completes its collection of Charles Darwin’s three-volume geology series appeared first on Smithsonian Insider.

The Smithsonian Libraries offer a vast amount of resources to the general public. This video gives you a peek into the amazing world of discovery […]

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Here are some of the many resources the Smithsonian Libraries have to offer for Exploration, Encounter, Exchange in History

The post On-line resources for Smithsonian Libraries appeared first on Smithsonian Insider.

Facebook’s digital currency project Libra has unveiled HSBC legal chief...

Celo, a competing project to...

File photo: Lorne Street Elementary students had to grab books from a book bin after their library was closed during the recession.; Credit: Annie Gilbertson/KPCC

Annie Gilbertson

More than 200 Los Angeles Unified School District elementary school libraries have reopened in just two months, according to district officials.

Recession-era budget cuts had left many libraries without staffing. The cuts persisted even when the economy began to improve: a year ago half of the district's 650,000 students were still without a librarian or library aide.

Without library workers, state law prohibits students from browsing collections, pulling reference materials or checking out books. 

“We have been living without libraries and, no, we don’t want to because they are essential for academic achievement and learning for our students," said Mark Bobrosky, a librarian at Walter Reed Middle School.

School board member Monica Ratliff created a task force to recommend ways to expand libraries after KPCC reported that Lorne Street Elementary in Northridge had a library full of books collecting dust.

"This idea of equity — we are trying to make sure we don't have library deserts," Ratliff said at the board's curriculum, instruction and assessment committee meeting on Tuesday.

Even when the board committed funds for elementary school libraries, the district found it hard to fill openings. Library aides worked just three hours a day, five days a week.

Members of the task force suggested assigning library aides to two schools, doubling their hours and providing benefits.  Elementary school libraries began to quickly reopen. 

But while conditions have improved for elementary students, middle school libraries are still hard hit, with nearly 65 percent of their campus libraries shuttered.

Bobrosky said reopening the libraries is vital for L.A. Unified's success in implementing the Common Core state standards, which require research projects incorporating a variety of texts.

This content is from Southern California Public Radio. View the original story at SCPR.org.

A San Francisco eatery keeps a lending library of cookbooks.

The books on the Library of Babel's digital shelves contain vast amounts of knowledge, but you'll have a hard time finding it.

Digital check-outs are becoming an increasingly popular option.

The digital age isn't making libraries obsolete; it's making them more important than ever.

From centuries-old temples to sleek modern masterpieces, libraries are some of humanity's most beautiful architectural accomplishments.

Even if you haven't read some of the books in your library, they are still doing you good.

The Nordic nation gets bookish at the 2018 Venice Architecture Biennale with an exposition dubbed 'Mind-Building'

Finland, the world's most literate nation, rings in its 100th birthday with the opening of Oodi Helsinki Central Library.

By 'borrowing' someone from the Human Library, you get to learn their story — and share their humanity.

Planet Green's web video series features 26 tasty organic treats... in alphabetical order.

Many public library systems are eliminating late fees on materials because they see them as a form of social inequity.

Americans went to libraries more than the movies in 2019, according to a new Gallup poll.

Sweden has a floating library — the bokbåten — that brings thousands of books to people on dozens of remote islands in the Stockholm archipelago twice a year.

With more than 150,000 illustrations of life here on Earth, the Biodiversity Heritage Library is a free, global library is full of history, myths and legends.

The Sysmac Library for the NJ/NX/NY Controller provides Function Blocks packed with know-how that makes advanced control easy.(SYSMAC-XR[][][])

More Than 600 Destinations Added

Decades' worth of contents present an untapped opportunity for TV studios and legacy content owners.

SY0-501 – CompTIA Security+ Certification Exam

The Metro Transportation Library has begun collecting, cataloging and providing access to “digital” documents via our online catalog. These important resources have been produced and disseminated in electronic format – rather than being released “on paper.”

Up until now, we had been providing access to plenty of digitized documents - those which were scanned to provide electronic portability for resource sharing.

Some of our print documents (books, reports, etc.) had digital versions published along with print copies, and we had linked to those in our online catalog. Other items that were published in print were scanned to create a PDF document, allowing them to be emailed or easily accessed in other ways. For example, our collection of historic L.A. transit plans offers numerous full-text digital documents.

In both cases, the digital documents supplemented the original print versions. They appear in our online catalog just as a book does, but with links to a URL that opens the PDF document for that title.

However, more and more information is being “born digital” -- published electronically, as opposed to in print format. Rather than printing these items out to add to our collection, we are cataloging the electronic version to conserve resources and provide better access and more options for our users.

We wanted to share with you some of the many benefits of growing our digital documents collection and why it is important to capture these “born digital” documents for posterity.

Digital documents do not take up valuable space. We save paper (and time, and ink) by not printing out electronic documents. We save additional resources by not binding, labeling and barcoding printed documents, as well as other physical processing. Cataloging the electronic version provides all the content directly to our users in a direct, cost-efficient manner.

Digital documents do not get lost or stolen. The Dorothy Peyton Gray Transportation Library & Archive has its own server space to host digital documents in our digital libraries. We have created organized directories to facilitate sharing resources in a timely manner. By storing the documents electronically on our own servers, they are easily located and safeguarded from disappearing from the collection. There are numerous ways books, reports and other print documents can disappear from a collection: theft, mis-shelving, loss, never returned after checkout, or sustaining damage that hinders their use. Electronic access does not pose these problems.

Digital documents can serve multiple users simultaneously. While there is something to be said for the experience of curling up in bed with a great book, that book can only be experienced by one person at a time. Libraries are embracing eBooks because they reduce or eliminate the wait time for popular titles.

Likewise, our digital documents collection will accommodate multiple users at the same time. For example, when lengthy environmental impact reports (EIRs) are released to the public for review and comment, we now provide the user with the ability to consume this information at the same time as others, as well as at the time and place of his or her choosing.

Digital documents are findable as well as searchable. These resources are located the same way as other material formats in our collection. Our users will find relevant digital documents when searching the online catalog, although we do not currently have the ability to limit search results to only digital documents.

However, once a digital document is found, the user can open the link to the PDF and execute a keyword search within the document for the information they want.

Users can quickly locate specific data or text with a few keystrokes from home or their mobile device, as opposed to making a request of the Metro Library, having staff search for and locate a print document, scanning or sending the document to the user, and the user then searching through it for the information they need.

Like online news stories that disappear all too quickly, some resources that should persist forever often go away before they can be accessed. References to them often last longer than the access provided by the producer, leading users to waste time trying to track down something that no longer exists.

Transit advocacy groups go by the wayside, organizations merge with others, while other entities change their Internet domain names -- all these scenarios cause users to waste time searching for vanished resources, or search for URL links to desired documents that cannot be found.

Creating a lasting home for these items and making them permanently accessible meets these challenges. By cataloging electronic resources that fit our collection profile, we not only provide access to them, but preserve them as well.

As one of the premier transportation research collections in the country, we want to grow our collection to remain responsive to Metro’s ambitious mobility agenda moving forward. We can achieve this without using up more physical space or many of the costs associated with print documents.

Finally, we are mindful that more and more users will be accessing our collection via mobile devices in the coming years. New smartphones, e-readers and iPads allow students, researchers, historians, and anyone interested in transportation information the ability to access us however they like.

These devices will continue to provide users with greater amounts of information, more quickly, and in more customizable fashion, where they want and need it. Our growing digital documents collection helps us prepare for these for 24/7 access needs: anytime, anywhere.