This paper describes the FISHNet project, which developed a repository environment for the curation and sharing of data relating to freshwater science, a discipline whose research community is distributed thinly across a variety of institutions, and usually works in relative isolation as individual researchers or within small groups. As in other “small sciences”, these datasets tend to be small and “hand-crafted”, created to address particular research questions rather than with a view to reuse, so they are rarely curated effectively, and the potential for sharing and reusing them is limited. The paper addresses a variety of issues and concerns raised by freshwater researchers as regards data sharing, describes our approach to developing a repository environment that addresses these concerns, and identifies the potential impact within the research community of the system.

Researchers and the public can now have immediate access to data underlying discovery of new species of life on Earth, under a new streamlined system linking taxonomic research with open data publication.

The partnership paves the way for unlocking and preserving a wealth of 'small data' backing up research conclusions, which often become lost within a few years of an article's publication in an academic journal.

In the first example of the new collaboration in action, the Biodiversity Data Journal carries a peer-reviewed description of a new species of spider discovered during a field course in Borneo just one month ago. At the same time, the data showing location of the spider's occurrence in nature are automatically harvested by the Global Biodiversity Information Facility (GBIF), and richer data such as images and the species description are exported to the Encyclopedia of Life (EOL).

This contrasts with an average 'shelf life' of twenty-one years between field discovery of a new species and its formal description and naming, according to a recent study in Current Biology.

A group of scientists and students discovered the new species of spider during a field course in Borneo, supervised by Jeremy Miller and Menno Schilthuizen from the Naturalis Biodiversity Center, based in Leiden, the Netherlands. The species was described and submitted online from the field to the Biodiversity Data Journal through a satellite internet connection, along with the underlying data . The manuscript was peer-reviewed and published within two weeks of submission. On the day of publication, GBIF and EOL have harvested and included the data in their respective platforms.

The new workflow established between GBIF, EOL and Pensoft Publishers' Biodiversity Data Journal, with the support of the Swiss NGO Plazi, automatically exports treatment and occurrence data into a Darwin Core Archive, a standard format used by GBIF and other networks to share data from many different sources. This means GBIF can extract these data on the day of the article's publication, making them immediately available to science and the public through its portal and web services, further enriching the biodiversity data already freely accessible through the GBIF network. Similarly, the information and multimedia resources become accessible via EOL's species pages.

One of the main purposes of the partnership is to ensure that such data remain accessible for future use in research. A recent study published in Current Biology found that 80 % of scientific data are lost in less than 10 years following their creation.

Donald Hobern, GBIF's Executive Secretary, commented: "A great volume of extremely important information about the world's species is effectively inaccessible, scattered across thousands of small datasets carefully curated by taxonomic researchers. I find it very exciting that this new workflow will help preserve these 'small data' and make them immediately available for re-use through our networks."

"Re-use of data published on paper or in PDF format is a huge challenge in all branches of science", said Prof. Lyubomir Penev, managing director of Pensoft and founder of the Biodiversity Data Journal. "This problem has been tackled firstly by our partners from Plazi who created a workflow to extract data from legacy literature and submit it to GBIF. The workflow currently launched by GBIF, EOL and the Biodiversity Data Journal radically shortens the way from publication of data to their sharing and re-use and makes the whole process cost efficient", added Prof. Penev.

The elaboration of the workflow from BDJ and Plazi to GBIF through Darwin Core Archive was supported by the EU-funded project EU BON (Building the European Biodiversity Observation Network, grant No 308454). The basic concept has been initially discussed and outlined in the course of the pro-iBiosphere project (Coordination and policy development in preparation for a European Open Biodiversity Knowledge Management System, addressing Acquisition, Curation, Synthesis, Interoperability and Dissemination, grant No 312848).

Original source:

Miller J, Schilthuizen M, Burmester J, van der Graaf L, Merckx V, Jocqué M, Kessler P, Fayle T, Breeschoten T, Broeren R, Bouman R, Chua W, Feijen F, Fermont T, Groen K, Groen M, Kil N, de Laat H, Moerland M, Moncoquet C, Panjang E, Philip A, Roca-Eriksen R, Rooduijn B, van Santen M, Swakman V, Evans M, Evans L, Love K, Joscelyne S, Tober A, Wilson H, Ambu L, Goossens B (2014) Dispatch from the field: ecology of micro web-building spiders with description of a new species. Biodiversity Data Journal 2: e1076. DOI: 10.3897/BDJ.2.e1076

Are you in Eastern Europe and actively involved in monitoring and managing biodiversity data? Then the EU BON "Biodiversity data sharing and data publishing workshop" might just be the thing for you.

The event will take place on 22-23 March 2016 in Sofia, Bulgaria with focus on publishing of biodiversity data, in particular species occurrences, sample-based and citizen science data. The training will include a practical session during which participants will be assisted by experienced trainers from the EU BON project. To register and for more information, click here.

The sessions on data sharing will cover introductory overview of key concepts, demonstration and practical exercise using the GBIF Integrated Publishing Toolkit (IPT). The Global Biodiversity Information Facility (GBIF) is the world's largest initiative for enabling free access to biodiversity data via internet.

Special attention will be paid to data paper publishing led by specialists from Pensoft Publishers - a company well known among biodiversity scientists worldwide for technologically cutting-edge open access journals, such as: Research Ideas and Outcomes, ZooKeys, Biodiversity Data Journal, Nature Conservation, and a strong advocate of data publishing. Registration of data in GEO registry system will be also addressed during the workshop.

The following topics will be covered (detailed program will follow):

• The data publishing landscape, gaps and mobilization efforts
• Demonstration and practical session on data publishing using the GBIF IPT: step-by-step demo will show in detail (and in practice) how to publish a dataset using IPT.
• The Data Publishing Toolkit at EU BON: Automated creation of data papers, data and text integrated publishing via the ARPHA Publishing Platform
• Citizen Science gateway and demo of PlutoF Citizen Science module
• GoldenGate Imagine tool and copyright issues
• Registration of data in the GEO Registry System

Context and background: 

Addressing global problems, such as biodiversity loss and impacts of climate change requires open access to data. This was concluded by world leaders at Johannesburg Summit in 2002 when they established the Group for Earth Observations (GEO). EU BON (Building the European Biodiversity Observation Network) seeks to enhance biodiversity data availability and integration, and is the European contribution to the GEO Biodiversity Observation Network.

All biodiversity databases need to be integrated in GEO. Therefore, EU BON undertakes capacity building of biodiversity communities (e.g. researchers, citizen scientists, non-governmental organisations) that are involved in collecting and disseminating biodiversity information, including monitoring initiatives.

To register and for more information, click here.

 

 

Open access to biodiversity is key for addressing pertinent ecological issues such as biodiversity loss and impacts of climate change. On 22 & 23 March 2016, experts from EU BON met with scientists, policy makers and practitioners from across Europe to discuss issues of biodiversity data sharing, curation and publishing.

The workshop, which took place in Sofia, Bulgaria, introduced participants to key concepts, demonstration and practical exercise in biodiversity data sharing using the GBIF Integrated Publishing Toolkit (IPT). Practical training sessions led by Larissa Smirnova from the Royal Museum for Central Africa (Belgium) and Kyle Braak from GBIF demonstrated the integration and management of datasets in GBIF. A step-by-step demo and practical session on how to publish a data was also featured in the workshop.

Participants at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Special attention was paid to innovative data publishing practices in a session led by the local hosts Pensoft Publishers who introduced their ARPHA publishing platform, as well as its new journal Research Ideas & Outcomes (RIO), which publishes unconventional output types across the research cycle, including data and software descriptions, workflows, methods and many more.

PlutoF demonstrated its citizen science gateway and  demonstrated how the citizen science data can be managed using the CS module. Plazi also presented their GoldenGate Imagine tool, optimized for marking up, enhancing, and extracting text and data from PDF files.

    
Sessions at the at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

 

The SciDataCon 2014 will take place on 2–5 November 2014 in New Delhi, India and will be hosted by the Indian National Science Academy. With high-level keynotes, a mix of plenary and parallel sessions, and a stimulating poster session, SciDataCon is conceived as a focussed—yet inclusive—conference to address the issues most important to the global scientific and research community as they pertain to data and information. The International Scientific Programme Committee will play a key role in implementing the scientific programme with innovative online consultation and input from research and data science communities worldwide.

The sustainability challenges facing society today cannot be solved without multidisciplinary and transdisciplinary research on global sustainability that requires the use, sharing and integration of data across scientific disciplines and domains and from international sources. The effectiveness and credibility of this research will rely on the availability to the scientific and research community of quality-assessed and interoperable datasets.

To facilitate the work of international research undertakings—including the Future Earth international research programme on global sustainability launched by ICSU and its partners in 2014—and amplify the message of like-minded global data initiatives promoting data sharing and interoperability—including the Group on Earth Observations (GEO) and the recently established Research Data Alliance (RDA)—SciDataCon 2014 will highlight the theme of Data Sharing and Integration for Global Sustainability.

Applications for expert members of the International Scientific Programme Committee are invited. Please submit applications no later than 14 February 2014 using the online form available here.

 

Place and date: Joensuu, Finland, 19 March 2015

Venue: Joensuu Science Park, Digitarium and the Conference Facility "Network Oasis"

The 2nd EU BON training on data sharing tools will take place side by side to CETAF/EU BON informatics workshops (see full program and logistic details here). The event will be organised by UEF and Digitarium, EU BON consortium member and work package leader (WP2), in collaboration with CETAF ISTC and other EU BON work packages.

Next topics will be covered:

• Introduction to GEOSS, GEO BON, EU BON (Hannu Saarenmaa)
• Information architecture of EU BON (Antonio Garcia)
• Data standards, Darwin Core and extensions for sample-based quantitative data (Éamonn Ó Tuama)
• Demonstration of GBIF/EU BON IPT for monitoring networks (Larissa Smirnova and Franck Theeten)
• Practical exercise with sample dataset (Larissa Smirnova and Franck Theeten)
• Practical exercise with own data (all trainees)

The workshop will include lectures and hands-on work, so participants are required to bring their own laptops. We will provide information and instructions on software installations. If the participants want to install IPT tool themselves, they can read and learn how to de it here. For the practical exercises it’s recommended to bring  own data (taxonomic, monitoring).

EU BON is organising a "Biodiversity data sharing and data publishing workshop" to take place in Sofia, Bulgaria on 22-23 March 2016. The event is directed to biologists and other life scientists from Eastern Europe who are actively involved in monitoring  and managing biodiversity data. A core topic of this training will be the  publishing of biodiversity data, in particular species occurrences, sample-based and citizen science data. The training will include a practical session during which participants will be assisted by experienced trainers from the EU BON project.

Addressing global problems, such as biodiversity loss and impacts of climate change requires open access to data. This was concluded by world leaders at Johannesburg Summit in 2002 when they established the Group for Earth Observations (GEO).  EU BON (Building the European Biodiversity Observation Network) seeks to enhance biodiversity data availability and integration, and is the European contribution to the GEO Biodiversity Observation Network.

All biodiversity databases need to be integrated in GEO. Therefore, EU BON undertakes capacity building of biodiversity communities (e.g. researchers, citizen scientists, non-governmental organisations) that are involved in collecting and disseminating biodiversity information, including monitoring initiatives.

The sessions on data sharing will cover introductory overview of key concepts,  demonstration and  practical  exercise using the GBIF Integrated Publishing Toolkit  (IPT). The Global Biodiversity Information Facility (GBIF) is the world's largest initiative for enabling free access to biodiversity data via internet.

Special attention will be paid to data paper publishing led by specialists from Pensoft Publishers - a company well known among biodiversity scientists worldwide for technologically cutting-edge open access journals, such as: Research Ideas and Outcomes, ZooKeys, Biodiversity Data Journal, Nature Conservation, and a strong advocate of data publishing. Registration of data in GEO registry system will be also addressed during the workshop.

The following topics will be covered (detailed program will follow):

• The data publishing landscape, gaps and mobilization efforts
• Demonstration and practical session on data publishing using the GBIF IPT: step-by-step demo will show in detail (and in practice) how to publish a dataset using IPT.
• Data papers: types, structure, opportunities
• Citizen Science gateway and demo of PlutoF Citizen Science module
• GoldenGate Imagine tool and copyright issues
• Registration of data in the GEO Registry System

To register and for more information, click here.

Washington — Offshore drilling rig operators in the Gulf of Mexico reported 1,129 blowout preventer equipment component failures in 2017, according to the latest annual report from the Bureau of Safety and Environmental Enforcement’s SafeOCS reporting system.

Here we describe TOMOMAN (TOMOgram MANager), an extensible open-sourced software package for handling cryo-electron tomography data preprocessing. TOMOMAN streamlines interoperability between a wide range of external packages and provides tools for project sharing and archival.

Data-share this, pal: As the man said, you have no obligation to share any of your data and I have no obligation to believe anything you say.

As forwarded to us by Max Shepsi: I’m starting to see a pattern here!

A wireless media player and a related system and methodology are disclosed. One aspect of the wireless media player system pertains to a virtual connector system, apparatus, and method for the automatic establishment of wireless connectivity with other electronic devices. In one embodiment, the media player device employs the use of integrated Radio Frequency Identification (RFID) technology to exchange communication settings, media capability, and other parameters with an external device that also has integrated RFID technology. The automatic exchange of settings and other information via a proximity-based RFID data exchange allows a media player to quickly establish a secure communication link with another device via a commonly supported wireless protocol such as Ultra Wideband (UWB) or Bluetooth. Another aspect of the media player system pertains to a method of using the captured media capability of the connecting device to customize certain menu options and software parameters in the media player.

Data sharing is vital for online businesses. Companies share user data with vendors to help grow their business, boost user engagement, and personalize their products. In addition, companies often have to share data with governments and other regulatory bodies for compliance reasons. In this course, the final installment in the Privacy series, Nishant Bhajaria goes over various techniques you can apply to help bolster data privacy before you share data. Nishant begins by stepping through the various risks associated with data sharing, as well as common misconceptions related to privacy and data sharing. He then shares strategies for protecting data privacy and making more informed data sharing decisions, including how to leverage k-anonymity and l-diversity in your work. Along the way, Nishant shares challenges that allow you to put your new skills to the test.

Note: We recommend taking the previous course in this series, Privacy: How to Classify and Inventory Your Data, prior to beginning this course.

The movement to make data from clinical trials widely accessible has achieved enormous success, and it is now time for medical journals to play their part. From 1 July The BMJ will extend its requirements for data sharing to apply to all submitted clinical trials, not just those that test drugs or devices. The BMJ's Elizabeth Loder explains what...

Manitoba health officials have an agreement with First Nations leaders to track and share COVID-19 data, but the public may never know specifics of what the unique agreement yields.

We previously reported that parents of children enrolled in genomic research made more restrictive data sharing (DS) decisions than adults. The ethics of pediatric DS have been discussed, but reasons for differences in decision-making have not been explored.

We present an empirically based discussion of attitudes toward and preferences for DS obtained from structured interviews of adult patients and parents of pediatric patients enrolled in genomic research studies. Parents expressed more concern about future risks than adult participants. (Read the full article)

Data, collaboration, and the IoT are reframing loyalty for a new age

Encouraging data sharing can sometimes feel like refereeing kids on Christmas morning. “Mom said you have to SHARE!” my sister bawled, grabbing at the Game Boy in my hand as I held the toy just out of her reach. I had just gotten it as a Christmas present and had [...]

The post With government data sharing, don’t be a data scrooge appeared first on Government Data Connection.

For most of their history, in North America, electrical utilities have been centralized distribution networks. Utility operated generation resources are the hub of the network and electricity flows one-way via distribution networks largely controlled by the same utilities. In this model, there has been little reason for utilities to share anything but a small slice of data about their operations with anyone else other than themselves.

The ICO has launched a public consultation on its new draft data sharing code of practice. The consultation period ends on 9 September 2019. It is an update of the previous code, to align it with GDPR so as to address transparency, lawful bases for ...

The Data Protection Commission (“DPC”) issued guidance on data sharing in the public sector. The DPC noted its support for developing more efficient and customer-centric public services and sought to clarify the public sector obligations...

There are a lot of big steps you can take in a relationship. Dropping the 'L bomb', moving in together, combined finances, getting engaged. All these pale in comparison to sharing mobile data. Sharing your precious data with a significant other is big. You have to trust that your partner won't burn through it all while bingeing Netflix on the bus. You have to respect your partner's share. And you have to forgive when someone inevitably goes over the cap anyway. But how exactly does data sharing work? More »

Germany's IT systems are not ready for the VAT "quick fix" simplifications that entered into force on January 1, 2020, according to the European Commission.

Dementia is increasing in prevalence, and to date has no cure or treatment. One element in improving this situation is using and sharing data more widely to increase the power of research. Further, moving beyond established medical data into big data offers the potential to tap into routinely collected data from both within and outside the health system.