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The tale of two genes: from next-generation sequencing to phenotype [RESEARCH REPORT]

An 18-yr-old man with a history of intellectual disability, craniofacial dysmorphism, seizure disorder, and obesity was identified to carry a de novo, pathogenic variant in ASXL1 (c.4198G>T; p.E1400X) associated with the diagnosis of Bohring–Opitz syndrome based on exome sequencing. In addition, he was identified to carry a maternally inherited and likely pathogenic variant in MC4R (c.817C>T; p.Q273X) associated with monogenic obesity. Dual genetic diagnosis occurs in 4%–6% of patients and results in unique clinical phenotypes that are a function of tissue-specific gene expression, involved pathways, clinical expressivity, and penetrance. This case highlights the utility of next-generation sequencing in patients with an unusual combination of clinical presentations for several pillars of precision medicine including (1) diagnosis, (2) prognosis and outcome, (3) management and therapy, and (4) utilization of resources.




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Functional characterization of two rare BCR-FGFR1+ leukemias [RESEARCH REPORT]

8p11 myeloproliferative syndrome (EMS) represents a unique World Health Organization (WHO)-classified hematologic malignancy defined by translocations of the FGFR1 receptor. The syndrome is a myeloproliferative neoplasm characterized by eosinophilia and lymphadenopathy, with risk of progression to either acute myeloid leukemia (AML) or T- or B-lymphoblastic lymphoma/leukemia. Within the EMS subtype, translocations between breakpoint cluster region (BCR) and fibroblast growth factor receptor 1 (FGFR1) have been shown to produce a dominant fusion protein that is notoriously resistant to tyrosine kinase inhibitors (TKIs). Here, we report two cases of BCR–FGFR1+ EMS identified via RNA sequencing (RNA-seq) and confirmed by fluorescence in situ hybridization (FISH). Sanger sequencing revealed that both cases harbored the exact same breakpoint. In the first case, the patient presented with AML-like disease, and in the second, the patient progressed to B-cell acute lymphoblastic leukemia (B-ALL). Additionally, we observed that that primary leukemia cells from Case 1 demonstrated sensitivity to the tyrosine kinase inhibitors ponatinib and dovitinib that can target FGFR1 kinase activity, whereas primary cells from Case 2 were resistant to both drugs. Taken together, these results suggest that some but not all BCR–FGFR1 fusion positive leukemias may respond to TKIs that target FGFR1 kinase activity.




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BRAF V600E-mutated metastatic pediatric Wilms tumor with complete response to targeted RAF/MEK inhibition [RESEARCH REPORT]

Wilms tumor (WT) is the most common renal malignancy of childhood and accounts for 6% of all childhood malignancies. With current therapies, the 5-yr overall survival (OS) for children with unilateral favorable histology WT is greater than 85%. The prognosis is worse, however, for the roughly 15% of patients who relapse, with only 50%–80% OS reported in those with recurrence. Herein, we describe the extended and detailed clinical course of a rare case of a child with recurrent, pulmonary metastatic, favorable histology WT harboring a BRAF V600E mutation. The BRAF V600E mutation, commonly found in melanoma and other cancers, and previously undescribed in WT, has recently been reported by our group in a subset of epithelial-predominant WT. This patient, who was included in that series, presented with unilateral, stage 1, favorable histology WT and was treated with standard chemotherapy. Following the completion of therapy, the patient relapsed with pulmonary metastatic disease, that then again recurred despite an initial response to salvage chemotherapy and radiation. Next-generation sequencing (NGS) on the metastatic pulmonary nodule revealed a BRAF V600E mutation. After weighing the therapeutic options, a novel approach with dual BRAF/MEK inhibitor combination therapy was initiated. Complete radiographic response was observed following 4 months of therapy with dabrafenib and trametinib. At 12 months following the start of BRAF/MEK combination treatment, the patient continues with a complete response and has experienced minimal treatment-related side effects. This represents the first case, to our knowledge, of effective treatment with BRAF/MEK molecularly targeted therapy in a pediatric Wilms tumor patient.




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Tumoral and immune heterogeneity in an anti-PD-1-responsive glioblastoma: a case study [RESEARCH REPORT]

Clinical benefit of immune checkpoint blockade in glioblastoma (GBM) is rare, and we hypothesize that tumor clonal evolution and the immune microenvironment are key determinants of response. Here, we present a detailed molecular characterization of the intratumoral and immune heterogeneity in an IDH wild-type, MGMT-negative GBM patient who plausibly benefited from anti-PD-1 therapy with an unusually long 25-mo overall survival time. We leveraged multiplex immunohistochemistry, RNA-seq, and whole-exome data from the primary tumor and three resected regions of recurrent disease to survey regional tumor-immune interactions, genomic instability, mutation burden, and expression profiles. We found significant regional heterogeneity in the neoantigenic and immune landscape, with a differential T-cell signature among recurrent sectors, a uniform loss of focal amplifications in EGFR, and a novel subclonal EGFR mutation. Comparisons with recently reported correlates of checkpoint blockade in GBM and with TCGA-GBM revealed appreciable intratumoral heterogeneity that may have contributed to a differential PD-1 blockade response.




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Optimizing Diabetes Care With the Standardized Continuous Glucose Monitoring Report




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Primary Care Providers in California and Florida Report Low Confidence in Providing Type 1 Diabetes Care

People with type 1 diabetes may receive a significant portion of their care from primary care providers (PCPs). To understand the involvement of PCPs in delivering type 1 diabetes care, we performed surveys in California and Florida, two of the most populous and diverse states in the United States. PCPs fill insulin prescriptions but report low confidence in providing type 1 diabetes care and difficulty accessing specialty referrals to endocrinologists.




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Accuracy of Self-reported Colonic Polyps: Results from the Prostate, Lung, Colorectal, and Ovarian Screening Trial Study of Colonoscopy Utilization

Background:

Colonoscopy follow-up recommendations depend on the presence or absence of polyps, and if found, their number, size, and histology. Patients may be responsible for conveying results between primary and specialty care or providing medical information to family members; thus, accurate reporting is critical. This analysis assessed the accuracy of self-reported colonoscopy findings.

Methods:

3,986 participants from the Study of Colonoscopy Utilization, an ancillary study nested within the Prostate, Lung, Colorectal, and Ovarian Screening Trial, were included. Self-reports of polyp and adenoma were compared to medical records, and measures of sensitivity and specificity were calculated. Correlates of accurate self-report of polyp were assessed using logistic regression and weighted to account for study sampling.

Results:

The sensitivity and specificity of self-reported polyp findings were 88% and 85%, respectively, and for adenoma 11% and 99%, respectively. Among participants with a polyp, older age was associated with lower likelihood while polyp severity and non-white race were associated with increased likelihood of accurate recall. Among participants without a polyp, having multiple colonoscopies was associated with lower likelihood while family history of colorectal cancer was associated with increased likelihood of accurate recall. Among both groups, longer time since colonoscopy was associated with lower likelihood of accurate recall.

Conclusions:

Participants recalled with reasonable accuracy whether they had a prior polyp; however, recall of histology, specifically adenoma, was much less accurate.

Impact:

Identification of strategies to increase accurate self-report of colonic polyps are needed, particularly for patient–provider communications and patient reporting of results to family members.




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Advanced ADC Histogram, Perfusion, and Permeability Metrics Show an Association with Survival and Pseudoprogression in Newly Diagnosed Diffuse Intrinsic Pontine Glioma: A Report from the Pediatric Brain Tumor Consortium [FUNCTIONAL]

BACKGROUND AND PURPOSE:

Diffuse intrinsic pontine glioma is a lethal childhood brain cancer with dismal prognosis and MR imaging is the primary methodology used for diagnosis and monitoring. Our aim was to determine whether advanced diffusion, perfusion, and permeability MR imaging metrics predict survival and pseudoprogression in children with newly diagnosed diffuse intrinsic pontine glioma.

MATERIALS AND METHODS:

A clinical trial using the poly (adenosine diphosphate ribose) polymerase (PARP) inhibitor veliparib concurrently with radiation therapy, followed by maintenance therapy with veliparib + temozolomide, in children with diffuse intrinsic pontine glioma was conducted by the Pediatric Brain Tumor Consortium. Standard MR imaging, DWI, dynamic contrast-enhanced perfusion, and DSC perfusion were performed at baseline and approximately every 2 months throughout treatment. ADC histogram metrics of T2-weighted FLAIR and enhancing tumor volume, dynamic contrast-enhanced permeability metrics for enhancing tumors, and tumor relative CBV from DSC perfusion MR imaging were calculated. Baseline values, post-radiation therapy changes, and longitudinal trends for all metrics were evaluated for associations with survival and pseudoprogression.

RESULTS:

Fifty children were evaluable for survival analyses. Higher baseline relative CBV was associated with shorter progression-free survival (P = .02, Q = 0.089) and overall survival (P = .006, Q = 0.055). Associations of higher baseline mean transfer constant from the blood plasma into the extravascular extracellular space with shorter progression-free survival (P = .03, Q = 0.105) and overall survival (P = .03, Q = 0.102) trended toward significance. An increase in relative CBV with time was associated with shorter progression-free survival (P < .001, Q < 0.001) and overall survival (P = .004, Q = 0.043). Associations of longitudinal mean extravascular extracellular volume fraction with progression-free survival (P = .03, Q = 0.104) and overall survival (P = .03, Q = 0.105) and maximum transfer constant from the blood plasma into the extravascular extracellular space with progression-free survival (P = .03, Q = 0.102) trended toward significance. Greater increases with time were associated with worse outcomes. True radiologic progression showed greater post-radiation therapy decreases in mode_ADC_FLAIR compared with pseudoprogression (means, –268.15 versus –26.11, P = .01.)

CONCLUSIONS:

ADC histogram, perfusion, and permeability MR imaging metrics in diffuse intrinsic pontine glioma are useful in predicting survival and pseudoprogression.




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Twitch Is Reportedly Pivoting to Reality TV

Personally, I welcome whatever reality TV drivel Twitch dreams up to feed our insatiable appetite for content.




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Scientists Cry Foul After Government Redacts Criticism of Its Response in Key Coronavirus Report

"This government has failed to show any self-criticism whatsoever, when it is glaringly obvious to everybody that big mistakes have been made."




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Boba Fett is Reportedly Coming to The Mandalorian

Boba Fett has been on Lucasfilm’s to-do list for a while now.




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Destiny 2 Trials of Osiris Rewards, Map, Armor and Weapons: May 8 Trials report



Destiny 2 Trials of Osiris returns once again later today – here's what you need to know for this week's end-game PvP challenge.




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Coronavirus in Scotland: Testing strategy to be reviewed amid care worker reports

THE SCOTTISH Government is reviewing its Covid-19 testing strategy after the Deputy First Minster has been left “frustrated” by reports home care workers have been told to travel to the other side of Scotland for tests.




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Fast fashion speeding toward environmental disaster, report warns

Study highlights industry failures and calls for shift in consumer attitudes

The fashion industry needs to fundamentally change in order to mitigate the environmental impact of fast fashion, experts have said.

Clothes rental, better recycling processes, pollution control technology and the innovative use of offcuts are among measures that could help, they said.

Continue reading...




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Britain to quarantine incoming travellers for 14-days -Times report




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Nearly 90 coronavirus cases reported at Polyus unit in Siberia




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Reports of the death of the film industry have been greatly exaggerated

Hollywood loves a good comeback, and post-coronavirus will be no exception, writes costume designer Kristin M Burke

  • Coronavirus and culture – a list of major cancellations
  • Coronavirus – latest updates
  • See all our coronavirus coverage
  • Many events have killed the film industry: the 1918 influenza epidemic, the second world war, the invention of television, the invention of VCRs, the invention of the internet, 9-11, strike after strike after strike. And yet, like a phoenix, it rises, every time stronger than before. The appetite for its product is insatiable especially in times of political trouble and uncertainty about the future. People want to escape. They want to be entertained.

    The way we make movies most certainly must change. In the best of circumstances, we are a crew of 75 people jammed into a room with very little ventilation, holding our breath until we hear “CUT”. We are in close contact with one another all day long. We never really thought about it before. All of that is about to change. Film sets usually function as big families, and moving forward, that family unit will take on a stronger, protective meaning. This is how we self-regulate in the post-pandemic era.

    Continue reading...




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    Obama Slams Dropping of Michael Flynn Case, Calls White House COVID-19 Response 'Absolute Chaotic Disaster': Report

    Audio of a private conversation shows the 44th president's unvarnished views about the former national security adviser's case and the White House's COVID-19 response.




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    Jobs Report Reveals Racial Inequality in Unemployment at an Historic Low, Thanks to Pandemic

    More than 20 million Americans lost their jobs in the last month, and unemployment among African-Americans has hit 16.7 percent.




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    U.S. CDC reports 1,248,040 coronavirus cases, 75,477 deaths

    The U.S. Centers for Disease Control and Prevention (CDC) on Friday reported 1,248,040 cases of the new coronavirus, an increase of 28,974 cases from its previous count, and said that the number of deaths had risen by 2,180 to 75,477.




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    Mysterious inflammatory syndrome in children potentially linked to COVID-19 reported in Montreal

    As Quebec prepares to reopen schools, doctors are poring over 15-20 cases of children with what seems to be the same illnesses reported in U.S. and Europe




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    'Bring on Lampard and Morris!' - Chelsea fans react to reports of Gianfranco Zola exit

    The Italian is reportedly set to leave Stamford Bridge at the end of his contract..




    report

    Activision Blizzard and EA report a strong first-quarter

    Stay home, keep gaming




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    10 takeaways from the worst jobs report in US history

    BALTIMORE (AP) - Brutal. Horrific. Tragic.

    Choose your description. The April jobs report showed, in harrowing detail, just how terribly the coronavirus outbreak has pummeled the U.S. economy. Most obviously, there's the 14.7% unemployment rate, the highest since the Great Depression. And the shedding of more than 20 million jobs, ...




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    Gas stoves making indoor air up to five times dirtier than outdoor air, report finds

    Gas cookers making people sick and exposing tens of millions to air pollution levels that would be illegal if they were outside

    Gas stoves are making people sick, contributing pollution that makes indoor air up to two to five times dirtier than outdoor air, according to a new report.

    Related: Microplastics found in greater quantities than ever before on seabed

    Continue reading...




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    NBA teams set to reopen training facilities as league issues memo regarding safety protocol: report

    While NBA teams are slowly gearing up to return to training facilities this week, the league has reportedly issued a memo prohibiting those with elevated temperatures from participating.  



    • 9a646f7a-0ecb-59f0-9796-432404d305ba
    • fox-news/sports/nba
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    • fox-news/sports/nba/denver-nuggets
    • fox-news/sports/nba/portland-trail-blazers
    • fox-news/sports/nba/cleveland-cavaliers
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    • Paulina Dedaj

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    Joe Flacco could be out until September after neck surgery: reports

    Super Bowl champion quarterback Joe Flacco underwent neck surgery last month and is expected to be out until September, according to multiple reports.




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    Ravens' Earl Thomas gifted flashy necklace by wife after she allegedly held him at gunpoint: report

    Baltimore Ravens safety Earl Thomas appears to have reconciled with his wife after reports emerged earlier this week that she held him at gunpoint last month after discovering an alleged affair. 







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    Roy Horn of Las Vegas magic duo Siegfried and Roy dies of COVID-19: report

    Magician Roy Horn, who alongside Siegfried Fischbacher starred in a popular, long-running Las Vegas act built around rare tigers, died on Friday from of complications of COVID-19, the Las Vegas Review-Journal newspaper reported. He was 75.




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    Northern Ireland police launch online reporting tool for Covid-19 lockdown breaches

    Read our live updates on coronavirus HERE Coronavirus: The symptoms




    report

    Which countries have not reported cases of Covid-19?

    Read our live updates on coronavirus HERE Coronavirus: The symptoms




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    Years of jobs growth wiped out in month of coronavirus, report says

    Follow our live coronavirus updates here Coronavirus: the symptoms




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    Boris Johnson has been &apos;at helm of Covid-19 response since outbreak began&apos;: Downing Street hits back at Sunday Times report

    Downing Street has fiercely rebuffed newspaper reports that Boris Johnson failed to act in the early stages of the coronavirus outbreak.




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    Contact tracing &apos;most promising approach&apos; for ending coronavirus lockdown measures, major report says

    A major study has deemed increasing testing and contact tracing in the community the "most promising approach" to lifting coronavirus lockdown measures in the short term.




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    Deficit could hit £300 billion amid race to keep economy alive during coronavirus crisis, report shows

    Follow our live coronavirus updates here




    report

    2019 was hottest year on record for Europe as clear global warming trend continues, report shows

    2019 was the hottest year on record for Europe as global warming trends continue, major analysis has shown.




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    Health chiefs deny report coronavirus patients turned away from London&apos;s NHS Nightingale due to lack of nurses

    Health bosses have denied a report that transfers of coronavirus patients to the newly built NHS Nightingale in London were rejected due to a lack of nurses.




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    UK coronavirus death toll at least 5,000 higher than hospital reports, new figures show

    The true number of deaths linked to coronavirus in the UK is at least 5,000 higher than those reported from hospitals, new figures show.




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    UK following reports that Kim Jong Un is dead &apos;very closely&apos;, Foreign Secretary Dominic Raab confirms

    The Foreign Secretary has confirmed the Government is following reports of Kim Jong Un's death "very closely".




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    Coronavirus fatalities in England around 40% higher than reported as highest ever weekly death toll recorded

    The death toll linked to coronavirus in England is around 40 per cent higher than previously reported, new figures show.




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    Twitter DMs down: Users report issues with direct messaging as site works to fix problem

    Twitter users have been complaining that their direct messaging function (DMs) is down.




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    TV anchor accused of cheating on girlfriend after half-naked &apos;lover&apos; appears on webcam during news report

    Not for one Spanish TV anchor, whose video-chat blunder might have cost him his relationship.




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    Nigel Farage visited by police over &apos;breaching lockdown&apos; by travelling to Dover to report on migrants

    Nigel Farage has been visited by police officers who advised him not to breach lockdown restrictions after he travelled to Dover to report on migrants.




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    O2 and Vodafone down: Thousands of users unable to make calls with network issues reported

    Hundreds of O2 and Vodafone customers have reported problems with the networks.




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    UK becomes first European country to report 30,000 coronavirus deaths as toll hits another grim milestone

    Public Health England medical director Professor Yvonne Doyle said it was "too early" to compare the UK statistics with that of other countries.




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    UK was not prepared for worst-case pandemic scenario, leaked report reveals

    The UK was ill-prepared to deal with a health pandemic, according to a secret Whitehall document produced years before the coronavirus outbreak.




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    Twitter failing to curb misinformation “superspreaders,” report warns

    Posts from high-profile accounts tout questionable virus therapies and cures.