nuc Neutral mononuclear indium(III) photosensitizers for CO2 photoreduction By pubs.rsc.org Published On :: Dalton Trans., 2024, 53,17772-17776DOI: 10.1039/D4DT02595D, CommunicationZaichao Zhang, Li-Zhi Fu, Piao He, Xiao-Yi YiNeutral mononuclear indium(III) complexes (In-1–In-3) containing 2,6-di(1H-pyrrol-2-yl)pyridine and substituted dipyridylpyrrole pincer ligands are employed as photosensitizers in photocatalytic CO2 reduction.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Asymmetric triply bridged lanthanide binuclear clusters with distinctly different magnetic behaviors By pubs.rsc.org Published On :: Dalton Trans., 2024, Accepted ManuscriptDOI: 10.1039/D4DT02652G, CommunicationYue Yang, Yu-Xia Wang, Yu-Zhe Lei, Peng ChengIsomorphic binuclear clusters Gd and Dy with antiferromagnetic and ferromagnetic couplings are separately exhibiting single-molecule magnetic behavior and strong magnetocaloric entropy.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Detailed mechanism of DNA/RNA nucleobase substituting bridging ligand in diruthenium (II,III) and dirhodium (II,II) tetraacetato paddlewheel complexes: Protonation of the leaving acetate is crucial By pubs.rsc.org Published On :: Dalton Trans., 2024, Accepted ManuscriptDOI: 10.1039/D4DT02621G, Paper Open Access   This article is licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported Licence.Iogann Tolbatov, Tiziano Marzo, Paolo Umari, Diego La Mendola, Alessandro MarronePaddlewheel complexes of bimetallic scaffolds are emerging metallic agents in the bioinorganic chemistry landscape. In the most commonly employed construct, these complexes are decorated by carboxylate moiety, prompting their possible...The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Polyphosphazene-based hyper crosslinked polymers for efficient uranium ion removal from nuclear wastewater By pubs.rsc.org Published On :: Environ. Sci.: Water Res. Technol., 2024, 10,2961-2980DOI: 10.1039/D4EW00614C, PaperRimsha Khalid, Isham Areej, Faiza Ashraf, Saqlain Raza, Amin Abid, Tayyab Ahsan, Bien TanThis study focuses on the removal of uranium ions from nuclear wastewater by fabricating inorganic–organic hybrid cyclic and linear polyphosphazene based polymers.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc L&T bags 'significant' order for global nuclear fusion project By www.thehindu.com Published On :: Fri, 25 Oct 2024 13:53:48 +0530 The company classifies a 'significant order' as orders valued between ₹1,000 crore and ₹2,500 crore Full Article Industry
nuc India will ‘commission a nuclear power reactor every year’: NPCIL chief By www.thehindu.com Published On :: Thu, 18 Jan 2024 09:40:10 +0530 An interview with B.C. Pathak on India’s nuclear power plans and strategy Full Article Science
nuc Techno-functional, antioxidant, and amino acid characterization of hydrolyzed bioactive peptides from coconut (Cocos nucifera L.) meal protein By pubs.rsc.org Published On :: Food Funct., 2024, 15,11266-11279DOI: 10.1039/D4FO02741H, PaperRoshanak Zolqadri, Zahra Akbarbaglu, Khashayar Sarabandi, Seyed Hadi Peighambardoust, Seid Mahdi Jafari, Amin Mousavi KhaneghahIn this study, the techno-functional characteristics and nutritional value of coconut meal protein (CMP) and the obtained polypeptides by alcalase (H-Alc), trypsin (H-Try), pancreatin (H-Pan), and pepsin (H-pep) were investigated.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc SOS - The San Onofre Syndrome, Nuclear Power's Legacy / Filmhub By darius.uleth.ca Published On :: [Place of publication not identified] : Filmhub, [2023] Full Article
nuc An overview: dinuclear palladium complexes for organic synthesis By pubs.rsc.org Published On :: Catal. Sci. Technol., 2024, 14,6112-6154DOI: 10.1039/D4CY00425F, Review ArticleSarita Yadav, Sangeeta Yadav, Mookan Natarajan, Kamal Kishore Pant, Ravi TomarFrom materials science and polymer chemistry to organic synthesis and medicinal chemistry, cross-coupling has influenced many scientific fields.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Effect of graphene electrode functionalization on machine learning-aided single nucleotide classification By pubs.rsc.org Published On :: Nanoscale, 2024, 16,20202-20215DOI: 10.1039/D4NR02274B, PaperMohd Rashid, Milan Kumar Jena, Sneha Mittal, Biswarup PathakIn this study, we explored the role of functionalized entities (C, H, N, and OH) in graphene electrodes using a machine learning (ML) framework integrated with the quantum transport method to achieve precise single DNA nucleotide identification.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Nucleic acid detection with single-base specificity integrating isothermal amplification and light-up aptamer probes By pubs.rsc.org Published On :: Nanoscale, 2024, 16,20067-20072DOI: 10.1039/D4NR01638F, CommunicationJaekyun Baek, Jihyun Park, Youngeun KimCLASSIC is a label-free DNA detection platform with single-nucleotide specificity and attomolar sensitivity. This assay offers rapid and sequence-specific DNA analysis through single-strand conversion and split light-up aptamer probes.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Macroscopic chiral symmetry breaking in gelation of Fmoc-amino acids: homochiral selective secondary nucleation promoted by the choice of solvent or stirring By pubs.rsc.org Published On :: Nanoscale, 2024, Advance ArticleDOI: 10.1039/D4NR04011B, CommunicationKentaro TashiroHomochiral selective secondary nucleation, promoted by the choice of solvent or stirring, was suggested as the key process for the emergence of macroscopic chiral symmetry breaking in the gelation of Fmoc amino acids.To cite this article before page numbers are assigned, use the DOI form of citation above.The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc Aptamer-functionalized Nucleic Acid Nanotechnology for Biosensing, Bioimaging and Cancer Therapy By pubs.rsc.org Published On :: Nanoscale, 2024, Accepted ManuscriptDOI: 10.1039/D4NR04360J, Review ArticleXiaofang Zheng, Zhiyong Huang, Qiang Zhang, Guoli Li, Minghui Song, Ruizi PengNucleic acids have enabled to fabricate self-assemblies and perform dynamic operations. Among different functional nucleic acids, aptamers can specifically bind to wide range of targets including proteins, viral antigens, living...The content of this RSS Feed (c) The Royal Society of Chemistry Full Article
nuc How chemistry helps track and detect nuclear materials By cen.acs.org Published On :: 10 May 2018 14:25:29 +0000 Chemists are designing better methods to analyze confiscated nuclear materials and to track nuclear activity remotely Full Article
nuc CordenPharma extends oligonucleotides in Colorado By cen.acs.org Published On :: 13 May 2018 11:44:51 +0000 Full Article
nuc Hanford researchers demonstrate continuous process to vitrify waste from nuclear weapons production By cen.acs.org Published On :: 21 May 2018 05:00:06 +0000 Full Article
nuc Dynacure launches with $55 million and Ionis antisense oligonucleotide drug By cen.acs.org Published On :: 06 Jul 2018 08:00:02 +0000 The French startup will develop an RNA-targeted therapy for the rare muscle disease centronuclear myopathy Full Article
nuc Flibe Energy gets DOE funding for nuclear research By cen.acs.org Published On :: 13 Jul 2018 15:31:00 +0000 Full Article
nuc Regulus cuts jobs after oligonucleotide safety setback By cen.acs.org Published On :: 13 Jul 2018 15:33:00 +0000 Full Article
nuc Nucleotide construction gets new chiral tool By cen.acs.org Published On :: 02 Aug 2018 19:29:51 +0000 Reagent developed through Scripps and BMS collaboration couples nucleosides with potential applications in antisense therapeutics Full Article
nuc P Chidambaram writes: Bare-knuckle politics By indianexpress.com Published On :: Sat, 09 Nov 2024 19:30:43 +0000 Full Article Columns Opinion
nuc Satellite images reveal North Korean leader Kim Jong-un's new nuclear facility By www.dnaindia.com Published On :: Sun, 10 May 2020 10:23:36 GMT The United States think tank has earlier stated that North Korea is almost finished with the making of a ballistic missile facility having the capacity to test-fire intercontinental ballistic missiles. Full Article World
nuc The Separation of Nuclear Families under U.S. Immigration Law By www.migrationpolicy.org Published On :: Fri, 01 Mar 2013 00:00:00 -0500 Testimony of Demetrios G. Papademetriou, MPI President, before the Subcommittee on Immigration and Border Security, Committee on the Judiciary, U.S. House of Representatives. Full Article
nuc ‘A Nuclear-Armed Afghanistan’ By indiauncut.com Published On :: 2009-03-18T00:06:00+04:30 That’s what Pakistan can become, warns Patrick French. (Via Nikhil Mehra.) Linkastic © 2007 IndiaUncut.com. All rights reserved. India Uncut * The IU Blog * Rave Out * Extrowords * Workoutable * Linkastic Full Article
nuc Tidal Lagoon’s Next Plant May Produce Power on Par with Nuclear By feedproxy.google.com Published On :: 2015-03-20T17:32:00Z The U.K. company planning the world’s first tidal-lagoon power station said its next plant may generate electricity at almost half the price. Full Article
nuc Japan Anticipates Clean Energy Will Edge Out Nuclear Power By feedproxy.google.com Published On :: 2015-04-28T18:12:00Z Japan anticipates that by 2030 clean energy such as solar and hydro will generate slightly more of the nation’s electricity than nuclear power plants. Full Article Storage Energy Efficiency Wind Power Solar
nuc Japan Anticipates Clean Energy Will Edge Out Nuclear Power By feedproxy.google.com Published On :: 2015-04-28T18:12:00Z Japan anticipates that by 2030 clean energy such as solar and hydro will generate slightly more of the nation’s electricity than nuclear power plants. Full Article Storage Energy Efficiency Wind Power Solar
nuc Iran's Zarif said draft nuclear plan could develop from Vienna talks By www.upi.com Published On :: Tue, 18 Mar 2014 11:48:40 -0400 Iran wants to work toward a draft agreement on a comprehensive solution to a lingering nuclear row with Western powers, the foreign minister said Tuesday. Full Article
nuc Iranian nuclear talks described as useful; more scheduled for April By www.upi.com Published On :: Wed, 19 Mar 2014 12:01:56 -0400 Iran's deputy foreign minister said nuclear negotiations in Vienna were useful and another round of talks was scheduled over the course of three days in April. Full Article
nuc Obama optimistic about prospects for Iranian nuclear agreement By www.upi.com Published On :: Thu, 20 Mar 2014 09:28:34 -0400 There's a chance for Iran to reach a comprehensive nuclear agreement that would benefit its people if the rights steps are taken, President Obama said Thursday. Full Article
nuc Work at North Korea missile, nuclear sites ongoing, Johns Hopkins says By www.upi.com Published On :: Thu, 20 Mar 2014 12:37:18 -0400 Researchers at Johns Hopkins University said Thursday work was ongoing at North Korean nuclear and missile sites, but no imminent threat is apparent. Full Article
nuc Woman Takes Nuclear Revenge Against Company By feedproxy.google.com Published On :: Sat, 09 May 2020 13:00:00 -0700 This woman took a truly nuclear revenge against a company that was up to all kinds of no good. The best part about this revenge, other than the fact that she brought justice to the company, was her added touch of subscribing everyone at the company to hundreds of different email alerts. She left the operation in complete and utter chaos. Full Article employee satisfying job revenge work awesome Reddit company
nuc Need Nuclear Power Plant? By feedproxy.google.com Published On :: NEED POWER PLANT? A PRAGMATIC APPROACH IS NEED OF THE HOUR Electric power is a growing need in a developing... Full Article
nuc TN: 800 workers stage protest at nuclear plant By timesofindia.indiatimes.com Published On :: Sat, 09 May 2020 19:10:54 IST Full Article
nuc Lockdown in Tamil Nadu: 800 guest workers stage protest at Kudankulam Nuclear Power Plant, attack cops By Published On :: Lockdown in Tamil Nadu: 800 guest workers stage protest at Kudankulam Nuclear Power Plant, attack cops Full Article
nuc Automated nucleic acid chain tracing in real time By journals.iucr.org Published On :: A method is presented for the automatic building of nucleotide chains into electron density which is fast enough to be used in interactive model-building software. Likely nucleotides lying in the vicinity of the current view are located and then grown into connected chains in a fraction of a second. When this development is combined with existing tools, assisted manual model building is as simple as or simpler than for proteins. Full Article text
nuc Crystal structure of the nucleoid-associated protein Fis (PA4853) from Pseudomonas aeruginosa By scripts.iucr.org Published On :: 2020-04-29 Factor for inversion stimulation (Fis) is a versatile bacterial nucleoid-associated protein that can directly bind and bend DNA to influence DNA topology. It also plays crucial roles in regulating bacterial virulence factors and in optimizing bacterial adaptation to various environments. Fis from Pseudomonas aeruginosa (PA4853, referred to as PaFis) has recently been found to be required for virulence by regulating the expression of type III secretion system (T3SS) genes. PaFis can specifically bind to the promoter region of exsA, which functions as a T3SS master regulator, to regulate its expression and plays an essential role in transcription elongation from exsB to exsA. Here, the crystal structure of PaFis, which is composed of a four-helix bundle and forms a homodimer, is reported. PaFis shows remarkable structural similarities to the well studied Escherichia coli Fis (EcFis), including an N-terminal flexible loop and a C-terminal helix–turn–helix (HTH) motif. However, the critical residues for Hin-catalyzed DNA inversion in the N-terminal loop of EcFis are not conserved in PaFis and further studies are required to investigate its exact role. A gel-electrophoresis mobility-shift assay showed that PaFis can efficiently bind to the promoter region of exsA. Structure-based mutagenesis revealed that several conserved basic residues in the HTH motif play essential roles in DNA binding. These structural and biochemical studies may help in understanding the role of PaFis in the regulation of T3SS expression and in virulence. Full Article text
nuc Bis(μ2-4-nitrophenolato)bis(4-nitrophenolato)di-μ3-oxido-octaphenyltetratin chloroform sesquisolvate [+ solvate]: a tetranuclear stannoxane By scripts.iucr.org Published On :: 2019-08-06 The title tetranuclear stannoxane, [Sn4(C6H5)8(C6H4NO3)4O2]·1.5CHCl3·solvent, crystallized with two independent complex molecules, A and B, in the asymmetric unit together with 1.5 molecules of chloroform. There is also a region of disordered electron density, which was corrected for using the SQUEEZE routine [Spek (2015). Acta Cryst. C71, 9–18]. The oxo-tin core of each complex is in a planar `ladder' arrangement and each Sn atom is fivefold SnO3C2 coordinated, with one tin centre having an almost perfect square-pyramidal coordination geometry, while the other three Sn centres have distorted shapes. In the crystal, the complex molecules are arranged in layers, composed of A or B complexes, lying parallel to the bc plane. The complex molecules are linked by a number of C—H⋯O hydrogen bonds within the layers and between the layers, forming a supramolecular three-dimensional structure. Full Article text
nuc Crystal structure of a binuclear mixed-valence ytterbium complex containing a 2-anthracene-substituted phenoxide ligand By scripts.iucr.org Published On :: 2019-08-23 Reaction of 2-(anthracen-9-yl)phenol (HOPhAn, 1) with divalent Yb[N(SiMe3)2]2·2THF in THF–toluene mixtures affords the mixed-valence YbII–YbIII dimer {[2-(anthracen-9-yl)phenolato-κO]bis(tetrahydrofuran)ytterbium(III)}-tris[μ-2-(anthracen-9-yl)phenolato]-κ4O:O;κO:1,2-η,κO-{[2-(anthracen-9-yl)phenolato-κO]ytterbium(II)} toluene trisolvate, [Yb2(C20H13O)5(C4H8O)2]·3C7H7 or [YbIII(THF)2(OPhAn)](μ-OPhAn)3[YbII(OPhAn)]·3C7H7 (2), as the major product. It crystallized as a toluene trisolvate. The Yb—O bond lengths in the crystal structure of this dimer clearly identify the YbII and YbIII centres. Interestingly, the formally four-coordinate YbII centre shows a close contact with one anthracene C—C bond of a bridging OPhAn ligand, bringing the formal coordination number to five. Full Article text
nuc Crystal and molecular structures of a binuclear mixed ligand complex of silver(I) with thiocyanate and 1H-1,2,4-triazole-5(4H)-thione By scripts.iucr.org Published On :: 2020-01-01 The complete molecule of the binuclear title complex, bis[μ-1H-1,2,4-triazole-5(4H)-thione-κ2S:S]bis{(thiocyanato-κS)[1H-1,2,4-triazole-5(4H)-thione-κS]silver(I)}, [Ag2(SCN)2(C2H3N3S)4], is generated by crystallographic inversion symmetry. The independent triazole-3-thione ligands employ the exocyclic-S atoms exclusively in coordination. One acts as a terminal S-ligand and the other in a bidentate (μ2) bridging mode to provide a link between two AgI centres. Each AgI atom is also coordinated by a terminal S-bound thiocyanate ligand, resulting in a distorted AgS4 tetrahedral coordination geometry. An intramolecular N—H⋯S(thiocyanate) hydrogen bond is noted. In the crystal, amine-N—H⋯S(thione), N—H⋯N(triazolyl) and N—H⋯N(thiocyanate) hydrogen bonds give rise to a three-dimensional architecture. The packing is consolidated by triazolyl-C—H⋯S(thiocyanate), triazolyl-C—H⋯N(thiocyanate) and S⋯S [3.2463 (9) Å] interactions as well as face-to-face π–π stacking between the independent triazolyl rings [inter-centroid separation = 3.4444 (15) Å]. An analysis of the calculated Hirshfeld surfaces shows the three major contributors are due to N⋯H/H⋯N, S⋯H/H⋯S and C⋯H/H⋯C contacts, at 35.8, 19.4 and 12.7%, respectively; H⋯H contacts contribute only 7.6% to the overall surface. Full Article text
nuc The first coordination compound of deprotonated 2-bromonicotinic acid: crystal structure of a dinuclear paddle-wheel copper(II) complex By scripts.iucr.org Published On :: 2020-01-17 A copper(II) dimer with the deprotonated anion of 2-bromonicotinic acid (2-BrnicH), namely, tetrakis(μ-2-bromonicotinato-κ2O:O')bis[aquacopper(II)](Cu—Cu), [Cu2(H2O)2(C6H3BrNO2)4] or [Cu2(H2O)2(2-Brnic)4], (1), was prepared by the reaction of copper(II) chloride dihydrate and 2-bromonicotinic acid in water. The copper(II) ion in 1 has a distorted square-pyramidal coordination environment, achieved by four carboxylate O atoms in the basal plane and the water molecule in the apical position. The pair of symmetry-related copper(II) ions are connected into a centrosymmetric paddle-wheel dinuclear cluster [Cu⋯Cu = 2.6470 (11) Å] via four O,O'-bridging 2-bromonicotinate ligands in the syn-syn coordination mode. In the extended structure of 1, the cluster molecules are assembled into an infinite two-dimensional hydrogen-bonded network lying parallel to the (001) plane via strong O—H⋯O and O—H⋯N hydrogen bonds, leading to the formation of various hydrogen-bond ring motifs: dimeric R22(8) and R22(16) loops and a tetrameric R44(16) loop. The Hirshfeld surface analysis was also performed in order to better illustrate the nature and abundance of the intermolecular contacts in the structure of 1. Full Article text
nuc The crystal structures and Hirshfeld surface analyses of a cadmium(II) and a zinc(II) mononuclear complex of the new tetrakis-substituted pyrazine ligand N,N',N'',N'''-[pyrazine-2,3,5,6-tetrayltetrakis(methylene)]tetrakis By scripts.iucr.org Published On :: 2020-02-18 The whole molecule of the cadmium(II) complex, diiodido{N,N',N'',N'''-[pyrazine-2,3,5,6-tetrayltetrakis(methylene)]tetrakis(N-methylaniline)-κ3N2,N1,N6}cadmium(II), [CdI2(C36H40N6)], (I), of the ligand N,N',N'',N'''-[pyrazine-2,3,5,6-tetrayltetrakis(methylene)]tetrakis(N-methylaniline) (L), is generated by a twofold rotation symmetry; the twofold axis bisects the cadmium atom and the nitrogen atoms of the pyrazine ring. The ligand coordinates in a mono-tridentate manner and the cadmium atom has a fivefold CdN3I2 coordination environment with a distorted shape. In the zinc(II) complex, dichlorido{N,N',N'',N'''-[pyrazine-2,3,5,6-tetrayltetrakis(methylene)]tetrakis(N-methylaniline)-κ3N2,N1,N6}zinc(II) dichloromethane 0.6-solvate, [ZnCl2(C36H40N6)]·0.6CH2Cl2, (II), ligand L also coordinates in a mono-tridentate manner and the zinc atom has a fivefold ZnN3Cl2 coordination environment with a distorted shape. It crystallized as a partial dichloromethane solvate. In the crystal of I, the complex molecules are linked by weak C—H⋯I contacts, forming ribbons propagating along [100]. In the crystal of II, the complex molecules are linked by a series of C—H⋯π interactions, forming layers lying parallel to the (1overline{1}1) plane. In the crystals of both compounds there are metal–halide⋯π(pyrazine) contacts present. The Hirshfeld analyses confirm the importance of the C—H⋯halide contacts in the crystal packing of both compounds. Full Article text
nuc Syntheses and crystal structures of a new pyrazine dicarboxamide ligand, N2,N3-bis(quinolin-8-yl)pyrazine-2,3-dicarboxamide, and of a copper perchlorate binuclear complex By scripts.iucr.org Published On :: 2020-02-14 The title pyrazine dicarboxamide ligand, N2,N3-bis(quinolin-8-yl)pyrazine-2,3-dicarboxamide (H2L1), C24H16N6O2, has a twisted conformation with the outer quinoline groups being inclined to the central pyrazine ring by 9.00 (6) and 78.67 (5)°, and by 79.94 (4)° to each other. In the crystal, molecules are linked by C—H⋯O hydrogen bonds, forming layers parallel to the (10overline{1}) plane, which are in turn linked by offset π–π interactions [intercentroid distances 3.4779 (9) and 3.6526 (8) Å], forming a supramolecular three-dimensional structure. Reaction of the ligand H2L1 with Cu(ClO4)2 in acetonitrile leads to the formation of the binuclear complex, [μ-(3-{hydroxy[(quinolin-8-yl)imino]methyl}pyrazin-2-yl)[(quinolin-8-yl)imino]methanolato]bis[diacetonitrilecopper(II)] tris(perchlorate) acetonitrile disolvate, [Cu2(C24H15N6O2)(CH3CN)4](ClO4)3·2CH3CN or [Cu2(HL1−)(CH3CN)4](ClO4)3·2CH3CN (I). In the cation of complex I, the ligand coordinates to the copper(II) atoms in a bis-tridentate fashion. A resonance-assisted O—H⋯O hydrogen bond is present in the ligand; the position of this H atom was located in a difference-Fourier map. Both copper(II) atoms are fivefold coordinate, being ligated by three N atoms of the ligand and by the N atoms of two acetonitrile molecules. The first copper atom has a perfect square-pyramidal geometry while the second copper atom has a distorted shape. In the crystal, the cation and perchlorate anions are linked by a number of C—H⋯O hydrogen bonds, forming a supramolecular three-dimensional structure. Full Article text
nuc A binuclear CuII/CaII thiocyanate complex with a Schiff base ligand derived from o-vanillin and ammonia By scripts.iucr.org Published On :: 2020-02-21 The new heterometallic complex, aqua-1κO-bis(μ2-2-iminomethyl-6-methoxyphenolato-1κ2O1,O6:2κ2O1,N)bis(thiocyanato-1κN)calcium(II)copper(II), [CaCu(C8H8NO2)2(NCS)2(H2O)], has been synthesized using a one-pot reaction of copper powder, calcium oxide, o-vanillin and ammonium thiocyanate in methanol under ambient conditions. The Schiff base ligand (C8H9NO2) is generated in situ from the condensation of o-vanillin and ammonia, which is released from the initial NH4SCN. The title compound consists of a discrete binuclear molecule with a {Cu(μ-O)2Ca} core, in which the Cu⋯Ca distance is 3.4275 (6) Å. The coordination geometries of the four-coordinate copper atom in the [CuN2O2] chromophore and the seven-coordinate calcium atom in the [CaO5N2] chromophore can be described as distorted square planar and pentagonal bipyramidal, respectively. In the crystal, O—H⋯S hydrogen bonds between the coordinating water molecules and thiocyanate groups form a supramolecular chain with a zigzag-shaped calcium skeleton. Full Article text
nuc Probing the structural pathway of conformational polymorph nucleation by comparing a series of α,ω-alkanedicarboxylic acids By scripts.iucr.org Published On :: 2020-03-26 Herein the nucleation pathway of conformational polymorphs was revealed by studying the relationships and distinctions among a series of α,ω-alkanedicarboxylic acids [HOOC–(CH2)n−2–COOH, named DAn, where n = 5, 7, 9, 11, 13, 15] in the solid state and in solution. Their polymorphic outcomes, with the exception of DA5, show solvent dependence: form I with conformation I crystallizes from solvents with hydrogen-bond donating (HBD) ability, whereas form II with conformation II crystallizes preferentially from solvents with no HBD ability. In contrast, form II of DA5 does not crystallize in any of the solvents used. Quantum mechanical computation showed that there is no direct conformational link between the solvents and the resultant polymorphic outcomes. Surprisingly, solute aggregates were found in no-HBD solvents by Fourier transform infrared spectroscopy, and only monomers could be detected in HBD solvents, suggesting stronger solvation. Furthermore, it was found that all six compounds including DA5 followed the same pattern in solution. Moreover, crystal-packing efficiency calculations and stability tests stated that dimorphs of DA5 bear a greater stability difference than others. These suggest that the rearrangement from conformation II to I could not be limited by hard desolvation in HBD solvents, where form I was also obtained. In other systems, metastable II was produced in the same solvents, probably as a result of the rearrangement being limited by hard desolvation. In this work, a comparative study uncovers the proposed nucleation pathway: difficulty in desolvation has a remarkable effect on the result of rearrangement and nucleation outcome. Full Article text
nuc A structural study of TatD from Staphylococcus aureus elucidates a putative DNA-binding mode of a Mg2+-dependent nuclease By scripts.iucr.org Published On :: 2020-04-17 TatD has been thoroughly investigated as a DNA-repair enzyme and an apoptotic nuclease, and still-unknown TatD-related DNases are considered to play crucial cellular roles. However, studies of TatD from Gram-positive bacteria have been hindered by an absence of atomic detail and the resulting inability to determine function from structure. In this study, an X-ray crystal structure of SAV0491, which is the TatD enzyme from the Gram-positive bacterium Staphylococcus aureus (SaTatD), is reported at a high resolution of 1.85 Å with a detailed atomic description. Although SaTatD has the common TIM-barrel fold shared by most TatD-related homologs, and PDB entry 2gzx shares 100% sequence identity with SAV0491, the crystal structure of SaTatD revealed a unique binding mode of two phosphates interacting with two Ni2+ ions. Through a functional study, it was verified that SaTatD has Mg2+-dependent nuclease activity as a DNase and an RNase. In addition, structural comparison with TatD homologs and the identification of key residues contributing to the binding mode of Ni2+ ions and phosphates allowed mutational studies to be performed that revealed the catalytic mechanism of SaTatD. Among the key residues composing the active site, the acidic residues Glu92 and Glu202 had a critical impact on catalysis by SaTatD. Furthermore, based on the binding mode of the two phosphates and structural insights, a putative DNA-binding mode of SaTatD was proposed using in silico docking. Overall, these findings may serve as a good basis for understanding the relationship between the structure and function of TatD proteins from Gram-positive bacteria and may provide critical insights into the DNA-binding mode of SaTatD. Full Article text
nuc Molecular conformational evolution mechanism during nucleation of crystals in solution By scripts.iucr.org Published On :: 2020-04-24 Nucleation of crystals from solution is fundamental to many natural and industrial processes. In this work, the molecular mechanism of conformational polymorphism nucleation and the links between the molecular conformation in solutions and in crystals were investigated in detail by using 5-nitrofurazone as the model compound. Different polymorphs were prepared, and the conformations in solutions obtained by dissolving different polymorphs were analysed and compared. The solutions of 5-nitrofurazone were proven to contain multiple conformers through quantum chemical computation, Raman spectra analysis, 2D nuclear Overhauser effect spectroscopy spectra analysis and molecular dynamics simulation. The conformational evolution and desolvation path was illustrated according to the 1H NMR spectra of solutions with different concentrations. Finally, based on all the above analysis, the molecular conformational evolution path during nucleation of 5-nitrofurazone was illustrated. The results presented in this work shed a new light on the molecular mechanism of conformational polymorphism nucleation in solution. Full Article text
nuc The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level By scripts.iucr.org Published On :: 2019-09-24 The Y128F single mutant of p-hydroxymandelate oxidase (Hmo) is capable of oxidizing mandelate to benzoate via a four-electron oxidative decarboxylation reaction. When benzoylformate (the product of the first two-electron oxidation) and hydrogen peroxide (an oxidant) were used as substrates the reaction did not proceed, suggesting that free hydrogen peroxide is not the committed oxidant in the second two-electron oxidation. How the flavin mononucleotide (FMN)-dependent four-electron oxidation reaction takes place remains elusive. Structural and biochemical explorations have shed new light on this issue. 15 high-resolution crystal structures of Hmo and its mutants liganded with or without a substrate reveal that oxidized FMN (FMNox) possesses a previously unknown electrophilic/nucleophilic duality. In the Y128F mutant the active-site perturbation ensemble facilitates the polarization of FMNox to a nucleophilic ylide, which is in a position to act on an α-ketoacid, forming an N5-acyl-FMNred dead-end adduct. In four-electron oxidation, an intramolecular disproportionation reaction via an N5-alkanol-FMNred C'α carbanion intermediate may account for the ThDP/PLP/NADPH-independent oxidative decarboxylation reaction. A synthetic 5-deaza-FMNox cofactor in combination with an α-hydroxyamide or α-ketoamide biochemically and structurally supports the proposed mechanism. Full Article text
nuc Insight into the role of pre-assembly and desolvation in crystal nucleation: a case of p-nitrobenzoic acid By scripts.iucr.org Published On :: 2019-09-18 As one of the most important phenomena in crystallization, the crystal nucleation process has always been the focus of research. In this work, influences of pre-assembly species and the desolvation process on the crystal nucleation process were studied. p-Nitrobenzoic acid (PNBA) was taken as a model compound to investigate the relationship between solution chemistry and nucleation kinetics in seven different solvents. One unsolvated form and four solvates of PNBA were obtained and one of the solvates was newly discovered. The nucleation behaviours and nucleation kinetics of PNBA in the seven solvents were studied and analyzed. Density functional theory (DFT) and solvation energy calculation were adopted to evaluate the strength of solute–solvent interactions. Vibrational spectroscopy combined with molecular simulation was applied to reveal the pre-assembly species in the solution. Based on these results, a comprehensive understanding of the relationship between molecular structure, crystal structure, solution chemistry and nucleation dynamics was proposed and discussed. It was found that the structural similarity between solution chemistry and crystal structure, the interaction between specific sites and the overall strength of solvation will jointly affect the nucleation process. Full Article text
nuc Solid/liquid-interface-dependent synthesis and immobilization of copper-based particles nucleated by X-ray-radiolysis-induced photochemical reaction By journals.iucr.org Published On :: Full Article text