Set to compile the largest biodiversity data collection for Europe to date, the EU-funded FP7 project Building the European Biodiversity Observation Network (EU BON) has now launched the beta-version of its European Biodiversity Portal.

Despite being a beta version, this release already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations.

Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources.

Started in 2012, the five-year project EU BON has been working towards building this new European Biodiversity Portal where scattered and various information and tools are collected, highlighted and widely shared for future research.

The service will provide all interested parties with a professional database platform with a large amount of implications. For example, coordinators can receive information about related monitoring programs in different countries. Initiatives could integrate their data and compare the trends and status across different countries and regions.

"The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes.", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON.

We invite everyone to test the new portal and send us their feedback and suggestions for improvements via our Feedback Form.

EU projects EuMon and EU BON call out to monitoring programs to share data and expertise for building the European Biodiversity Portal.

Combining forces, two large scale EU projects, EuMon and EU BON, are set to compile the largest data collection on biodiversity monitoring activities in Europe to date. Using existing biodiversity data and metadata collected by the two projects, the initiative is a stepping stone in completing a comprehensive European Biodiversity Portal. The projects now call out to monitoring programs across the Old Continent and beyond, to join in, provide information about their schemes and share their expertise for the cause.

For its life span between 2004 and 2008 the project EU-wide monitoring methods and systems of surveillance for species and habitats of Community interest (EuMon) created Europe's most comprehensive metadata catalogue of biodiversity monitoring activities.

Started in 2012, the five-year project Building the European Biodiversity Observation Network(EU BON) has been working towards building a new European Biodiversity Portal where this information is collected, highlighted and widely shared for future research and applied biodiversity conservation. The beta version is now all set up and available to test here.

To answer knowledge gaps since the project has ended in 2008, the original EuMon monitoring meta database is being further expanded with new information on data availability and access, as well as with new remote sensing data. Previously underrepresented, the marine realm is now also included in the EuMon collection.

"Monitoring data has received a central stage in recent years, a process largely facilitated by the instalment of the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES). However, while knowledge about monitoring efforts is important, we still miss a large variety of available programs and biodiversity data", explains EuMon's Project Leader Prof. Dr. Klaus Henle, Helmholtz Centre for Environmental Research - UFZ.

"We, therefore, currently aim to increase and update the number of monitoring programs in the EuMon catalogue, as the catalogue still covers less than half of all existing programs in Europe", adds EuMon Project Coordinator, Dirk Schmeller, UFZ.

In a joint initiative EuMon and EU BON are now looking to create the opportunity for monitoring program coordinators to publish their data by using the data publishing service of the EU BON portal (data embargos also possible).

The service will provide all interested parties with a professional database platform with a large amount of implications. For example, coordinators can receive information about related monitoring programs in different countries. Initiatives could integrate their data and compare the trends and status across different countries and regions. Volunteers can find contacts about schemes in their regions they may consider to join.

Using the data publishing service of EU BON will also facilitate data sharing with the Global Biodiversity Information Facility.

"The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes. We invite projects from across Europe to publish their datasets via the European Biodiversity Portal and become a part of this one-of-a-kind initiative", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON.

How to take part:

To access the EuMon database, please visit http://eumon.ckff.si/biomat. For sharing information about your monitoring program, please register here. You will then be able to provide metadata about your scheme via a simple online questionnaire. Answering the full set of questions is desirable, but not compulsory.

Key in ensuring the effectiveness of conservation efforts and maintaining ecosystem health, measuring biodiversity can benefit greatly when remote sensing data comes into the equation. A new EU BON related paper, published in the journal Ecological Indicators, proposes open source solutions for measuring the important Rao's Q index, when it comes to remote sensing data.

Abstract: 

Measuring biodiversity is a key issue in ecology to guarantee effective indicators of ecosystem health at different spatial and time scales. However, estimating biodiversity from field observations might present difficulties related to costs and time needed. Moreover, a continuous data update for biodiversity monitoring purposes might be prohibitive. From this point of view, remote sensing represents a powerful tool since it allows to cover wide areas in a relatively low amount of time. One of the most common indicators of biodiversity is Shannon's entropy H′, which is strictly related to environmental heterogeneity, and thus to species diversity. However, Shannon's entropy might show drawbacks once applied to remote sensing data, since it considers relative abundances but it does not explicitly account for distances among pixels’ numerical values. In this paper we propose the use of Rao's Q applied to remotely sensed data, providing a straightforward R-package function to calculate it in 2D systems. We will introduce the theoretical rationale behind Rao's index and then provide applied examples based on the proposed R function.

Original Source: 

Rocchini, D., Marcantonio, M., Ricotta, C. (2017). Measuring Rao's Q diversity index rom remote sensing: an open source solution. Ecological Indicators, 72: 234-238. [5years-IF: 3.649] DOI:10.1016/j.ecolind.2016.07.039

A new editorial, published in the Journal of Apllied Ecology looks at modelling and monitoring as methods for adaptive biodiversity management in the 21st century.

Abstract: 

With increasing threats on biodiversity, informed conservation decisions need to be based on currently observed and future predicted trends of biodiversity (Pereira, Navarro & Martins 2012; Guisan et al. 2013). In this regard, two essential components supporting informed biodiversity conservation decisions are good monitoring data to assess recent and ongoing trends (Collen et al. 2013; Pereira et al. 2013) and robust models to anticipate possible future trends (Pereira et al. 2010a; Akc
akaya et al. 2016). Models benefit from robust monitoring data sets, that is repeated observations of biodiversity, as they need data to be fitted or validated, but models can also help assess data representativeness (e.g. by highlighting any bias), support proper data collection (e.g. covering the relevant gradients) or be used to make more effective use of biodiversity observations (Guisan et al. 2006, 2013; Ferrier 2011).

Read more in the open access paper.

Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity.

The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures.

With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures.

The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses.

Find out more in the original research paper:

Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591

A recent story, featured on CORDIS News, focuses on EU BON and its achievements. Based on a recent project's publication in ‘Nature – Scientific Reports’ and information from the project, the new item discusses important project outcomes, including the European Biodiversity Portal, and their contribution to drawing a more accurate picture of current biodiversity to aid efforts for sustainable governance of natural resources.

Here is a snippet from the news feature on CORDIS: 

A recent article published in the journal ‘Scientific Reports’ states, ‘Monitoring schemes provide an important source of information on biodiversity change, guiding further research, conservation assessment and planning.’ The article cites The European Biodiversity Portal, designed and implemented by the EU-funded EU BON project that offers researchers, policy-makers, and others interested in biodiversity, easy access to insights on trends and modelling techniques.

The project worked on the establishment and adoption of new data standards, the development of tools to enable collaborative research and the encouragement of citizen-scientists. As a result, EU BON, by building the European Biodiversity Observation Network, has created advanced techniques for data analysis along with new approaches for modelling and strategies for future biodiversity monitoring.

Read the full publication here.

Biodiversity data are sparse, biased and collected at many resolutions. So techniques are needed to combine these data and provide some clarity. This is where downscaling comes in. Downscaling predicts the occupancy of a species in a given area. That is, the number of grid squares a species is predicted to occupy in a standard grid of equally sized squares. Downscaling uses the intrinsic patterns in the spatial organization of an organism’s distributions to predict what the occupancy would be, given the occupancy at a coarser resolution.

Groom et al. (2018) tests different downscaling models on birds and plants in four countries and in different landscapes and shows which models work best. The results show that all models work similarly, irrespective of the type of organism and landscape. However, some models were biased, either under- or overestimating occupancy. However, a few models were both reliable and unbiased. This means we can automate calculation of species occupancy. Workflows can harvest data from many sources and calculate species metrics in a timely manner, potentially delivering warnings so that interventions can be made.

Species invasions, habitat degradation and mass extinctions are not a future threat, they are happening now. Understanding how we should react, and what policies we need should be underpinned by solid evidence. Imagine if we had systems where we could monitor biodiversity just like we monitor the climate in easy to understand numbers that are both accurate and sensitive to change.

Тhe first meeting of the Freshwater Steering Group to be held in Uppsala, Sweden, on 10–12 June, 2013. The meeting is kindly supported by the Swedish EPA.

Please register for the workshop by sending an e-mail to Willem.Goedkoop@slu.se no later than 13 May.

The SciDataCon 2014 will take place on 2–5 November 2014 in New Delhi, India and will be hosted by the Indian National Science Academy. With high-level keynotes, a mix of plenary and parallel sessions, and a stimulating poster session, SciDataCon is conceived as a focussed—yet inclusive—conference to address the issues most important to the global scientific and research community as they pertain to data and information. The International Scientific Programme Committee will play a key role in implementing the scientific programme with innovative online consultation and input from research and data science communities worldwide.

The sustainability challenges facing society today cannot be solved without multidisciplinary and transdisciplinary research on global sustainability that requires the use, sharing and integration of data across scientific disciplines and domains and from international sources. The effectiveness and credibility of this research will rely on the availability to the scientific and research community of quality-assessed and interoperable datasets.

To facilitate the work of international research undertakings—including the Future Earth international research programme on global sustainability launched by ICSU and its partners in 2014—and amplify the message of like-minded global data initiatives promoting data sharing and interoperability—including the Group on Earth Observations (GEO) and the recently established Research Data Alliance (RDA)—SciDataCon 2014 will highlight the theme of Data Sharing and Integration for Global Sustainability.

Applications for expert members of the International Scientific Programme Committee are invited. Please submit applications no later than 14 February 2014 using the online form available here.

Place and date: Joensuu, Finland, 19 March 2015

Venue: Joensuu Science Park, Digitarium and the Conference Facility "Network Oasis"

The 2nd EU BON training on data sharing tools will take place side by side to CETAF/EU BON informatics workshops (see full program and logistic details here). The event will be organised by UEF and Digitarium, EU BON consortium member and work package leader (WP2), in collaboration with CETAF ISTC and other EU BON work packages.

Next topics will be covered:

• Introduction to GEOSS, GEO BON, EU BON (Hannu Saarenmaa)
• Information architecture of EU BON (Antonio Garcia)
• Data standards, Darwin Core and extensions for sample-based quantitative data (Éamonn Ó Tuama)
• Demonstration of GBIF/EU BON IPT for monitoring networks (Larissa Smirnova and Franck Theeten)
• Practical exercise with sample dataset (Larissa Smirnova and Franck Theeten)
• Practical exercise with own data (all trainees)

The workshop will include lectures and hands-on work, so participants are required to bring their own laptops. We will provide information and instructions on software installations. If the participants want to install IPT tool themselves, they can read and learn how to de it here. For the practical exercises it’s recommended to bring  own data (taxonomic, monitoring).

The "Open Science at the Global Scale: Sharing e-Infrastructures, Sharing Knowledge, Sharing Progress" conference will take place on March 31, 2015 in Brussels, Belgium. The conference is organized under the aegis of the European Commission (DG CONNECT) to bring together policy and research stakeholders from all the regions targeted by the project (Asia, Africa, Arabia, India, Europe and Latin America) to discuss major developments and perspectives in the field of global e-Infrastructures for Research and Education.

The main outcomes of the CHAIN-REDS project will be also presented on this occasion:

• The development of a Distributed Computing Infrastructure interoperation model between Europe and other regions
• The promotion of international standards and technical guidelines for interoperability of cloud services across continents
• One of the largest existing e-Infrastructure-related digital information systems, the CHAIN-REDS Knowledge Base
• A complete methodology for better sharing and using scientific data
• The CHAIN-REDS Science Gateway: a single portal for accessing remote computing and data services anywhere in the world
• The support of the creation of Identity Federations to make Authentification and Authorisation easier for users and service providers worldwide
• The main outcomes of the six awareness-raising workshops organised by CHAIN-REDS in Asia, Africa, Arabia, and Latin America

For Registration and more information, please visit the oficial conference webpage: https://agenda.ct.infn.it/event/1110/

There is a world of tools, standards and data out there, ready for you to use. Biodiversity Informatics deals with the application of informatics techniques to biodiversity information for improved management, presentation, discovery, exploration and analysis of scientific data. Combined with open data sources on the Internet, this is a powerful new approach in doing research. During this conference, organised by the Belgian Biodiversity Platform and several key institutes, we would like to take you on a trip to the world of biodiversity informatics & open data. After this conference a series of related workshops will be organized.

"Global Biodiversity Assessment and Monitoring: Science, Data and Infrastructure Needs for IPBES and Beyond" is a joint symposium of the Future Earth Clusters ‘Global Biodiversity Assessment and Monitoring, Prediction and Reporting’ and "Support for IPBES", which will take place from 6 to 10 March 2016 in Monte Verita, Ascona, Switzerland. 

The symposium follows up on the initial meeting on "Global Biodiversity Monitoring" at Yale University in May 2015. The 2016 event will in particular bring biodiversity and global change scientists from Europe, Africa, and Asia to this discussion and add as additional focus the scientific needs for IPBES, in particular on indicators and scenarios. Key goals of the conference are to link the main research groups active in this area, improve data sharing, develop collaborative analyses, realize potential synergies and advance international cooperation. Work efforts to date have been organized into several working groups and the meeting will provide opportunity for these groups to advance or complete their work and for new initiatives to form. Future Earth is entering the next formative stage and the symposium is a forum to advance the role of biodiversity within Future Earth as well as develop or engage in new research and funding opportunities under its umbrella.

Please see here for the draft program and logistical information, and http://biodiversitymonitoring.org for more background about the Future Earth Biodiversity Monitoring cluster.

Further information on the event is available in the official announcement here.

EU BON is organising a "Biodiversity data sharing and data publishing workshop" to take place in Sofia, Bulgaria on 22-23 March 2016. The event is directed to biologists and other life scientists from Eastern Europe who are actively involved in monitoring  and managing biodiversity data. A core topic of this training will be the  publishing of biodiversity data, in particular species occurrences, sample-based and citizen science data. The training will include a practical session during which participants will be assisted by experienced trainers from the EU BON project.

Addressing global problems, such as biodiversity loss and impacts of climate change requires open access to data. This was concluded by world leaders at Johannesburg Summit in 2002 when they established the Group for Earth Observations (GEO).  EU BON (Building the European Biodiversity Observation Network) seeks to enhance biodiversity data availability and integration, and is the European contribution to the GEO Biodiversity Observation Network.

All biodiversity databases need to be integrated in GEO. Therefore, EU BON undertakes capacity building of biodiversity communities (e.g. researchers, citizen scientists, non-governmental organisations) that are involved in collecting and disseminating biodiversity information, including monitoring initiatives.

The sessions on data sharing will cover introductory overview of key concepts,  demonstration and  practical  exercise using the GBIF Integrated Publishing Toolkit  (IPT). The Global Biodiversity Information Facility (GBIF) is the world's largest initiative for enabling free access to biodiversity data via internet.

Special attention will be paid to data paper publishing led by specialists from Pensoft Publishers - a company well known among biodiversity scientists worldwide for technologically cutting-edge open access journals, such as: Research Ideas and Outcomes, ZooKeys, Biodiversity Data Journal, Nature Conservation, and a strong advocate of data publishing. Registration of data in GEO registry system will be also addressed during the workshop.

The following topics will be covered (detailed program will follow):

• The data publishing landscape, gaps and mobilization efforts
• Demonstration and practical session on data publishing using the GBIF IPT: step-by-step demo will show in detail (and in practice) how to publish a dataset using IPT.
• Data papers: types, structure, opportunities
• Citizen Science gateway and demo of PlutoF Citizen Science module
• GoldenGate Imagine tool and copyright issues
• Registration of data in the GEO Registry System

To register and for more information, click here.

The ZSL Institute of Zoology is organizing a one day symposim "Space - the final frontier for biodiversity monitoring?" to take place on 29 April 2016. The event will bring together leading experts in biodiversity monitoring and satellite remote sensing to discuss ways to better capitalise on this technology to monitor biological diversity globally.

For more information on participation and logistics, please visit the official event 's page.

The 5th International EcoSummit Congress, EcoSummit 2016 - Ecological Sustainability: Engineering Change, will take place at The Corum Convention Centre, Montpellier from 29 August – 1 September 2016.

This conference series was founded in 1996 in Copenhagen, as a forum to meet the demands of scientists working in several new ecological disciplines, and who required a better understanding of the concepts and methods for a holistic use of ecology in environmental management. Since 1996, EcoSummit has been taken around the world (Canada and China), with EcoSummit 2012 hosting 1600 participants from 75 countries in Columbus, Ohio, USA.

EcoSummit 2016 will centre on the ecology of terrestrial ecosystems and all habitats that are integrated within those ecosystems, including river networks, wetlands and coastlines. 

More information: http://www.ecosummit2016.org/

The 10th  International Conference on Ecological Informatics 'Facing Global Change by Sharing Data and Models' wil take place on 24‐28 October 2016 in Dubrovnik, Croatia  

By lending access via the Internet to biodiversity data in open data infrastructures, biodiversity informatics worldwide allows anyone, anywhere to access and analyze data about all types of life on Earth. In applying common standards, research not previously possible is enabled, and better decisions to conserve and sustainably use the biological resources of the planet made possible.

In this symposium an overview of present and future opportunities will be given alongside recent research presentations and demonstrations of up-to-date tools for providing and acquiring information, handling data and presenting results.

The symposium is arranged as an Oikos Satellite Symposium but is open to anyone, i.e. also those not attending the Oikos conference can register for the symposium.

This symposium is organised by Swedish LifeWatch, GBIF Sweden and Department of Ecology at SLU and it will take place on February 6 2017, in Ecology Building, Sölvegatan 37, Lund, Sweden.

For more information, please visit the official event's page: http://www.slu.se/biodiversity-informatics

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