The June 2014 updates of FishBase and SeaLifeBase are now available online!

FishBase: www.fishbase.us; www.fishbase.ca

FishBase stats to date: 32800 Species, 303100 Common names, 53900 Pictures,
50200 References, 2110 Collaborators, 700000 Visits/Month

SeaLifeBase: www.sealifebase.ca

High-quality biodiversity data is essential for answering key questions on biodiversity in Europe, for example regarding the state and trends of species or for evaluating ecosystem services and functions on various scales. A new EU BON report "Gap analysis and priorities for filling identified gaps in data coverage and quality" evaluates the state of available biodiversity information and points out gaps of available biodiversity information sources.

The report aims to assess relevant data sources on biodiversity on a European and global scale. The assessment particularly evaluates the gaps of available biodiversity information sources and, after outlining the most important ones, identifies priorities for improving the data availability and gives recommendations of how they can be closed.

The report is divided into three main sections, starting first with an overall overview of gaps and limitations of biodiversity datasets. After outlining some general limitations of biodiversity data in Europe, the key findings from the specific analyses are summarized along with recommendations of how existing gaps can be closed. The last part presents a chapter containing the specific gap analysis for a selection of several main global and European datasets. The datasets represent some main sources for biodiversity data, either for specific realms (terrestrial, marine, freshwater), taxonomic groups, thematic fields (taxonomy, genetic databases) or networks of European test sites.

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.us) are now updated to version February 2015.

The domain www.sealifebase.org is now served with load balancing between the two mirrors below.

- sealifebase.ca (UBC, Vancouver)
- sealifebase.de (Geomar, Kiel)

You will see which mirror is serving at the bottom left corner of the page.

The DE domain is recently acquired.

New research published with the support of the FP7 large-scale bioinformatics project Building the European Biodiversity Observation Network (EU BON) and the Alien Challenge COST action reveals the importance of open data in the study and control of invasive alien species. The study was published online in open access in the journal Management of Biological Invasions.

Invasive alien species cause a wide variety of problems, including issues related to conservation; to human and animal health; to agriculture and to fisheries management. But how can science be useful to manage such potential issues?

"To advise policy makers and inform land managers on the dangers posed by and how to fight alien species we need to understand the invasion process. Ideally, we would like to be able to predict the causes, routes and progression of invasions." explains Dr. Quentin Groom, Botanic Garden Meise, Belgium.

Recently, several research groups have pioneered the process of "Horizon Scanning" for new alien species, also there have been parallel developments in the creation of dynamic ecological models to predict invasions. However, the greatest limitation to these advances is the lack of suitable data.

"The problem of invasive species is international and rapidly changing. Data are required from an extensive area, for many species and for a long period but what is currently available is patchy and often inaccessible. We argue for the importance of open data to tackle the problem of invasive alien species." explains Dr. Groom.

This new research reviews why access to data are so important to invasive alien species research and gives an overview of the reasons why data are unavailable to researchers. Currently access to data is patchy and is restricted in many ways:

• Legally, the use of restrictive data licensing blocks its use.
• Technically, many software systems don't adequately support sharing, particularly in their provision of unique identifiers.
• Culturally, data secrecy is the default position for most organizations.

Currently invasive species data is patchy and often restricted legally, through the use of restrictive data licensing. Credit: Peter Desmet

Gradually, data are becoming more accessible and attitudes towards data access are changing. The advent of data publications allows researchers to attract citations from their data, while simultaneously making their data accessible and discoverable.

The community of biodiversity observers is highly fragmented and the creation of a European biodiversity network will improve communication so that grassroots biodiversity surveyors will understand issues of data sharing, citation and licensing that are so critical for a rapid response to invasive species.

###

Original Source:

Groom QJ, Desmet P, Vanderhoeven S & Adriaens T (2015) The importance of open data for invasive alien species research, policy and management. Management of Biological Invasions 6: in press. doi: 10.3391/mbi.2015.6.2.02

XML markup of taxonomic research and specimen data is a valuable tool for structuring the incessantly accumulating biodiversity knowledge. It allows for the opportunity to collectively use the currently fragmented information for more detailed analysis.

A new research paper, published in theBiodiversity Data Journal, demonstrates how XML markup using GoldenGATE can address the challenges presented by unstructured legacy data, like those presented in the widely used PDF format. The paper demonstrates how structured primary biodiversity data can be extracted from such legacy sources and aggregated with and jointly queried with data from other Darwin Core-compatible sources, to present a visualization of these data that can communicate key information contained in biodiversity literature.

Specimen data in taxonomic literature are among the highest quality primary biodiversity data. Innovative cybertaxonomic journals such as the Biodiversity Data Journal are using workflows that preserve the data's structure and semantic specificity and disseminate electronic content to aggregators and other users that makes these data reusable.

Such structure however is lost in traditional taxonomic publishing and currently, access to that resource is cumbersome, especially for non-specialist data consumers.

The question is: how do you manage this vast distributed repository of knowledge about biodiversity to make it easily available reusable for future research?

To answer this challenge this project queried XML structured articles published in Biodiversity Data Journal along with historical taxonomic literature marked up using GoldenGATE, and represents the results as a series of standard charts. XML structured documents are maintained by the Swiss NGO Plazi and are freely available online.

In such form, data associated with specimens becomes much more valuable as it can reveal key information about a particular species, and even about the scientists who investigate them. Charts indicate at a glance, for example, what time of year and elevation range a species is likely to be found at, useful information if you want to search for it in the field.

Our accumulated biodiversity knowledge includes an estimated 2-3 billion specimens in natural history collections and 500 million pages of printed text. These are the data we need to answer questions that are relevant to our world today, like setting conservation priorities and anticipating the effects of climate change on biodiversity and ecosystem functions that affect the lives of people.

"In short, we have half a billion pages worth of biodiversity knowledge and are just learning how to query it. The real power comes when data from many articles are combined, queried, and reused for new purposes. Potential applications span the scientific, policy, and public spheres. When we all have better access to the information that already exists in the global corpus of biodiversity literature, this helps us do a better job of exploring what we don't know and wisely applying what we do." explains the lead author Dr Jeremy Miller, Naturalis Biodiversity Center.

###

This project was supported by pro-iBiosphere and EU BON, two FP-7 (European Union Seventh Framework Programme, 2007-2013) grants (No 312848 and 308454).

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

One of the main outputs of EU BON will be the establishment of an European Biodiversity Portal based on data collected and compiled from a variety of sources including earth observations but also observations and monitoring data from (local) sites. One of the main points of this portal is to serve as a substantial building block of a global biodiversity portal planned by the Group of Earth Observations project GEO BON.

But how will this portal be useful to stakeholders on a more local level - for example for people involved in questions connected to biodiversity across European regions? What will be the real benefits of it for biodiversity monitoring and conservation? Just a couple of weeks after the Third EU BON Stakeholder Round Table in Granada, Spain, Mr Clint Alibrandi from REDIAM (Environment and Water Agency in Andalusia) gives us his views on these questions.

Picture:  Excursion to Sierra Nevada.; Credit: Katrin Vohland

Q: REDIAM shares a mission with EU BON in its attempt to collect, standardize and distribute available biodiversity data. What will be the expected benefits and challenges in the process of making this type of datasets available for society and environmental policy?

A: Among the responsibilities of the Regional Environmental Government of Andalusia are promoting Social Environmental Awareness, Managing a vast, diverse and very complex territory, Control and Mitigate any threats posed to the fragile ecosystems present in our region as well as all the responsibilities derived from the management and planning of the existing natural resources.

Considering these facts, it is necessary to be able to account for the best environmental information available. Since the early 80’s the Regional Environmental Government of Andalusia has been working on its Environmental Information System with the purpose of generating, compiling, standardizing and analyzing Environmental Information covering topics such as Climate, Water, Air Quality and Biodiversity by means of ICTs. This the REDIAM. The name comes from the Spanish Acronym "REd De Información AMbiental de Andalucía" which means the Environmental Information Network of Andalusia. It serves as a Unified Regional Environmental Information Registry.

From this effort, the information obtained by the REDIAM is made publicly available to be then employed in Decision Making processes and Management Planning on behalf of the Administrations, for Dissemination and Awareness as well as for Research purposes.

As such, it is of vital importance for the REDIAM to be able to account for updated and verifiable Information and Data Sources and this is what we consider to be the most important benefit on behalf of EU BON, as it will offer the possibility to have a higher level reference covering a larger perspective, allowing stakeholders, be it either from a local, regional or national level, to consult or work with data, tools and have reference to relevant policies concerning Biodiversity on the European scale in order to be able to better transpose them to a more local context.

Yet the greatest challenge we believe that EU BON might come to face is the fact that the different contexts that exist over the whole European territory make it very difficult to tailor tools and information formats which can cover the different priorities or needs that exist in the diverse makeup of stakeholders that exist from a local, regional and national perspective. The same can most probably apply to the feedback, queries or requests made to EU BON on behalf of the stakeholder and user community. It is never easy to reach a common base level and from the regional perspective, REDIAM has faced the same type of situations.

Q: What type of stakeholders do you hope to engage through your network - who is using your data and for what purposes?

A: The stakeholders which are currently engaged with the REDIAM consist in Universities, Research Centres, Public Bodies, Local Administrations, Private Companies just to name a few examples. There are over 150 organizations which are partners of the REDIAM, they provide relevant Environmental Information to the REDIAM and are responsible for updating the information.

And as can be expected,the information provided is as diverse as the makeup of stakeholders that are part of the REDIAM, with the following formats being made available: Cartography, Satellites Images, Databases, Reports, Statistics, Applications, Management Plans and Programmes, Orthophotos, Indicators, Studies.

Additionally the REDIAM offers the user community different alternatives in order to access the previously indicated information. The REDIAM Channel is a web portal with a Catalogue and Information Search System, OGC Services, Query and Viewer tools, Downloader. The user community is able to access its information and services. This community consists in Citizens, Universities, Public Administrations and Companies from the Public and Private Sector.

Q: Where do you see the cross section between REDIAM’s work and EU BON - what are the products from EU BON and other European projects that would be helpful for the work that you are doing?

A: The REDIAM has great interest in the following issues and we believe that EU BON would be up to the task of providing solutions and/or guidelines on how to be able to proceed to solve them:

• The elaboration of a common tool for the description and localization of species throughout the European Territory. This can prove a very useful service for Environmental Impact Assessments by providing a more complete view on different species distribution on determined area.
• Defining a standardized list of species which contains the taxonomically correct name for each one of them. EU BON could serve as a base reference to set guidelines for standardizing the taxonomical classification of species.
• Support and guidance in defining specific biodiversity indicators as proposed by EUROSTAT, a methodological and assessment guide of some sort.

Q: In your opinion what are the three greatest benefits of a European level biodiversity portal?

A: 1) Offering an opportunity of Standardizing and Harmonizing Biodiversity related information. We all speak the same "language" when referring to Biodiversity, but it is necessary that we all be able to follow the same "rules" as well. This is the first and most important pillar we believe that a European level Biodiversity portal can bring into play.

2) It would allow for and facilitate a widespread exchange of information amongst stakeholders throughout the whole European Territory.

3) And finally, it would allow a common analysis on a European level which would provide a general assessment on how different efforts and policies are effective, value which is the real status of Biodiversity and/or specific species independently from the limit of administrative or country borders.

About REDIAM:

The Environmental Information Network REDIAM has onboard experts from the Regional Ministry of Environment in Andalusia and its Water and Environmental Agency. With a team expertise ranging from local to regional and European level and from technical know-how to regional and thematic assessment, the main aim of the network is to integrate all spatially-referenced biodiversity data produced in Andalusia. Raw data are used to generate knowledge and improve its distribution, making it accessible and comprehensible for the general public.

​SeaLifeBase in CA server (www.sealifebase.ca) has been updated to date.

Biodiversity data are sparse, biased and collected at many resolutions. So techniques are needed to combine these data and provide some clarity. This is where downscaling comes in. Downscaling predicts the occupancy of a species in a given area. That is, the number of grid squares a species is predicted to occupy in a standard grid of equally sized squares. Downscaling uses the intrinsic patterns in the spatial organization of an organism’s distributions to predict what the occupancy would be, given the occupancy at a coarser resolution.

Groom et al. (2018) tests different downscaling models on birds and plants in four countries and in different landscapes and shows which models work best. The results show that all models work similarly, irrespective of the type of organism and landscape. However, some models were biased, either under- or overestimating occupancy. However, a few models were both reliable and unbiased. This means we can automate calculation of species occupancy. Workflows can harvest data from many sources and calculate species metrics in a timely manner, potentially delivering warnings so that interventions can be made.

Species invasions, habitat degradation and mass extinctions are not a future threat, they are happening now. Understanding how we should react, and what policies we need should be underpinned by solid evidence. Imagine if we had systems where we could monitor biodiversity just like we monitor the climate in easy to understand numbers that are both accurate and sensitive to change.

In 2013, Doñana Biological Reserve will host the first meeting of WP5 EU BON testing and validation of concepts, tools, and services, focusing on the organization and planning of the forthcoming WP5 tasks. The meeting will take place in Palacio de Doñana, Huelva, Spain, from 2 to 4 April 2013.
The aim of the meeting is to bring together the experts in charge of the implementation of the WP5 tasks with the people responsible for the data architecture (WP2), the tools developers (WP3, 4) and the policy and dialogue responsible partners (WP6, 7, 8). The meeting aims at providing a precise definition of the responsibilities of the partners involved and discussing the organization of the work process.

Integrating mechanisms into macroecology 

8^th Annual Meeting of the Specialist Group for Macroecology of the Ecological Society of Germany, Austria, and Switzerland (GfÖ)

Martin-Luther-University Halle-Wittenberg, Institute of Biology, Department Geobotany & Botanical Garden, Am Kirchtor 1, 06108 Halle (Saale), Germany

Linking processes and mechanistic approaches (e.g., from physiology, experimental ecology, demography, and evolution) with macroecological approaches, scales, and methods has long been discussed among macroecologists. Still, only few steps toward implementing such links have been taken, yet. With the 8th Annual Meeting of the Specialist Group for Macroecology of the GfÖ, we want to offer a forum for presenting and discussing both tested approaches and new ideas to make these links. Additionally, in order to move beyond discussion, we invite all participants to join the conference workshop on the 2nd day. Here, we plan to intensively discuss gaps in existing approaches and possible ways for bridging these gaps in several discussion groups and to take first steps towards publishing the summarized workshop results. 

http://www.macroecology.org/

The 13th European Ecological Federation (EEF) and 25th Italian Society of Ecology’s (S.It.E.) joint conference will take place in Rome from 21st - 25th September 2015.  

"Ecology at the Interface" focuses on interactions at all biological levels, from membrane exchanges to food web dynamics, in addition to physical ecotones, from deep sediment-bottom water to land-atmosphere, and disciplinary ecotones linking ecology to sociology, economics, law, technology and other fields of knowledge concerning daily human life.

For 5 full days the conference expects about 1500 participants from all over Europe, proposing a rich programme articulated in a number of plenary and contributed sessions, symposia, workshops andround tables.      

Deadlines for symposia and workshop proposals and abstract submission are available here and the first circular here.  

The proposed venue is the Congress Centre of Rome - EUR.

You can download the full brochure here.

For more information visit the official conference website.

Theme:  FishBase and SeaLifeBase: a diversity of uses for biodiversity studies  

Date:      September 9, 2016

Venue:   Amphitheatre Rouelle, Museum national d’Histoire naturelle (MNHN), Paris

See tentative program/agenda below..

Open to all interested. If you wish to attend this event, contact:

Patrice Pruvost
Chargé de conservation d'ichtyologie
UMR Borea-7208
Département milieux et peuplements aquatiques
Museum national d’Histoire naturelle (MNHN)
CP26 - 43 rue cuvier
tel : 33 1 40 79 37 60
fax : 33 1 40 79 37 71
75005 Paris
E-mail: pruvost@mnhn.fr

With about 87 percent of precincts reporting, 57 percent of residents voted against the measure, according to the Associated Press.

The post Question 4: Voters reject legalization of some psychedelic substances appeared first on Boston.com.

The trial also gave a rare glimpse inside the hospital’s gender clinic.

The post Boston Children’s must pay nearly $2 million in retaliation lawsuit appeared first on Boston.com.

At her first Met Gala, Ayo Edebiri showed out in a youthful white look fading into a garden full of colorful flowers at the bottom by Loewe.

The post The Met Gala was in full bloom with Zendaya, Jennifer Lopez, Mindy Kaling among the standout stars appeared first on Boston.com.

As part of her Love Letters podcast, Meredith Goldstein hosted a panel discussion on polyamory and the future of relationships in Massachusetts.

The post Q&A: What does the reality of an open relationship look like? appeared first on Boston.com.

Composer Sebastian Evans has created scores for a large number of well-known cartoons, including since 2012 the score for the relaunch of the animated classic ... Read more

The post “As soon as I realised that composing was a job, that’s what I wanted to do” appeared first on CMUSE.

In a competitive and saturated industry like music, it often gets hard to distinguish exactly what is needed to thrive. Income is not always stable ... Read more

The post The Top 5 Qualities You Need To Be a Successful Musician appeared first on CMUSE.

Violinist Joshua Bell teamed up with Sony as they unveiled a new virtual reality concert experience for classical music fans. Using a Playstation VR headset, ... Read more

The post Can virtual reality give classical music a boost? appeared first on CMUSE.

Actor Timothée Chalamet made a surprise appearance at his own look-alike contest in Lower Manhattan on Sunday, a well-attended event that drew an order to disperse from police and at least one arrest

The post Actor Timothée Chalamet crashes his own look-alike contest after police shut down crowded event appeared first on Boston.com.

Under the federal law, nearly all hourly workers in the U.S. are entitled to overtime pay after 40 hours a week. But many salaried workers are exempt from that requirement — unless they earn below a certain level.

The post Biden administration finalizes rule to grant overtime for millions more salaried workers appeared first on Boston.com.

Krasinski, who grew up in Newton, told People that his immediate reaction to the honor was “just immediate blackout, actually. Zero thoughts.”

The post John Krasinski named People magazine’s 2024 Sexiest Man Alive appeared first on Boston.com.

Meet Flavio Sala! Flavio is a remarkably well-rounded Italian guitarist from Bojano, currently living in the United States. Throughout his career Flavio has been captivating all kinds ... Read more

The post 3 Questions with Flavio Sala, Italian Guitarist appeared first on CMUSE.

Over the years I have found myself in the midst of teams, as well as leading them. Here are some of my thoughts around qualities that make a great worship team member. 

1.  THEY UNDERSTAND THE IMPORTANCE AND POWER OF UNITY

They champion the vision of the church, team and leaders, and they are responsive and vocal about it.

They esteem others! They celebrate the wins of the team and individuals.

They always speak well of church, team, and leadership. 

2.  THEY ALWAYS COME PREPARED AND READY

They learn the songs. They know the repertoire.

They maintain their instruments and gear at a professional level.

They always bring their best to the platform, and they understand that this is a part of their worship. 

3.  THEY ARE TEACHABLE

They are willing and eager to learn.

They don’t just wait to be told, they are pro-active in asking ‘what can I do better?’.

They have the maturity and humility to handle correction, even when it is something that they may find hard to hear.

4.  THEY ARE CONSISTENT

They always have an attitude of excellence.

They live, not without, but above their emotions.

They are always warm, friendly and kind. They are approachable and relational.

They are loyal, reliable and faithful.

5.  THEY PRAY AND READ THEIR BIBLE

They have a devotional life of their own.

They prioritise their relationship with Jesus.

They are regularly in prayer and the word of God

They are a worshiper!

For more articles by Dan and the C3 staff, visit www.c3music.com/blog/. 

The Baseball Writers' Association of America on Nov. 11 announced the finalists for its Rookie of the Year Awards. Many Boston Red Sox fans take issue with its American League selections. Red Sox rookie Wilyer Abreu was not selected among the three AL ROY finalists. Colton Cowser, Austin Wells and Luis Gil — all AL East rivals — are the three youngsters nominated for this season's title.

Red Sox third baseman Rafael Devers and outfielder Jarren Duran were both finalists for AL Silver Slugger awards but neither won. Guardians' José Ramírez won for AL third basemen. Yankees sluggers Aaron Judge and Juan Soto as well as Orioles' Anthony Santander were the three AL outfield winners. BETTING: Check out our MA sports betting guide , where you can learn basic terminology, definitions and how to read odds for those interested in learning how to bet in Massachusetts. Duran, who was a finalist for the first time, led the majors in doubles with 48. He also tied with Arizona's Corbin Carroll for the major league lead in triples (14). He batted .285 with a .342 on-base percentage, .492 slugging

The Boston Red Sox offseason is expected to be full of moves. The Red Sox extended a qualifying offer worth a healthy $21.05 million to Nick Pivetta. While surprising, the decision by the Red Sox regarding Pivetta could end up being very shrewd, as The Boston Globe's Julian McWilliams explained alongside Jahmai Webster during Monday's episode of NESN's “310 To Left” podcast.

Southern California's Fast-Moving Mountain Fire Out of Control as 800 Firefighters Battle Inferno

On this week's edition of The Watchman, we're joined by Lt. Gen. (Ret.) Jerry Boykin of the Family Research Council and Kamal Saleem of Koome Ministries to discuss their thrilling new novel about radical Islam, "The Coalition." Click on the ... ...

Christina and I have counseled couples in crisis, couples in premarital times, couples who’d grown distant, and everything in between. Over these past twenty years of marriage and ministry, we’ve realized that with all the hurts of life, for marriage to last, the marriage relationship must be a healing place.   Here are 4 ways to increase the sacred vitality of your marriage as a healing place. 1. Cast off worldly illusions. If twenty years of marriage has taught me anything it is that the most...

On the eve of Yom Kippur, Hezbollah missiles flying into Israel from Lebanon, plus weapons cache discovered. Analysis from Gordon Robertson, Cindy Jacobs and Jon Medved on challenges facing Israel and the prospects of a bright future after the war.

If you are a Christian, then you are called to use your gifts at church in a volunteer role or perhaps professionally. Choosing the roles that best fit your personality and interests can lead to serving God and the church more effectively. Your job satisfaction will also increase as you serve people out of your strengths.  John Holland created a theory that can help you to have more job and ministry success and satisfaction. Holland identified six personality themes: Realistic, Investigative,...

Not everyone has a nice, big yard to stretch out in while sheltering in place from COVID-19. But maybe you don't need one. People are using virtual spaces to live out the real experiences they miss — like coffee shops, road trips, even building your own house on a deserted island, or Walden Pond. In a world where we're mostly confined to our homes and Zoom screens, does the line between virtual and real-life space mean much anymore?

Original Air Date: May 16, 2020

Guests:

Mark Riechers — Tracy Fullerton — Simon Parkin — Jane McGonigal — Donald D. Hoffman — Suzanne O’Sullivan

Interviews In This Hour:

There's No Pandemic In Animal Crossing — I Went To The Woods To Level Up Deliberately — The Most Boring Video Game Ever Made — Want to be Happier? Turn Everyday Tasks Into a Game — How We Fool Ourselves With The Concept of 'Reality'

Further Reading:

NYAS: Reality Is Not As It Seems

Jeff Blackwell has been a beloved on-air talent for Catholic Community Radio in Baton Rouge for many years, but in 2020, Jeff was in a fight for his life. After going to dinner with his wife Diane, he became violently ill.   “I knew I was sick,” Jeff says. “I had never felt that bad before in my life. I couldn’t hold anything down. I finally told my wife, ‘I've got to go to the ER. I can't handle it.’"  Jeff was then admitted to a local hospital. He was later transferred to ICU where his...

A woman of valour who can find? for her price is far above rubies. The heart of her husband doth safely trust in her, and he hath no lack of gain…. She considereth a field, and buyeth it; with the fruit of her hands she planteth a vineyard. She girdeth her loins with strength, and maketh strong her arms… Strength and dignity are her clothing; and she laugheth at the time to come. (Proverbs 31:10-25, the Hebrew in English Translation)  Today I chose an unusual translation for this devotion...

RectorSeal continues to press forward on the acquisition trail. On Feb. 6, RectorSeal announced the acquisition of Dust Free indoor air quality products.

Well, well, well. Here we are again. Today James and Dustin talk through the life as worshippers through different stages of their walks. Are you living up to heavenly expectations?

Check this out and see.

-----------------

The Worship Podcast is powered by All About Worship in partnership with WeAreWorship.

Subscribe to the podcast:
theworshippodcast.com
linktr.ee/theworshippodcast 

You can also connect with The Worship Podcast on social media:
The Worship Podcast on Facebook
The Worship Podcast on Instagram
The Worship Podcast on Twitter