mine 5-MeO-DALT: the freebase of N,N-diallyl-5-methoxytryptamine By scripts.iucr.org Published On :: 2020-04-17 The title compound {systematic name: N-[2-(5-methoxy-1H-indol-3-yl)ethyl]-N-(prop-2-en-1-yl)prop-2-en-1-amine), C17H22N2O, has a single tryptamine molecule in the asymmetric unit. The molecules are linked by strong N—H⋯N hydrogen bonds into zigzag chains with graph-set notation C(7) along the [010] direction. Full Article text
mine Palladium(II) complexes of a bridging amine bis(phenolate) ligand featuring κ2 and κ3 coordination modes By scripts.iucr.org Published On :: 2019-07-26 Bidentate and tridentate coordination of a 2,4-di-tert-butyl-substituted bridging amine bis(phenolate) ligand to a palladium(II) center are observed within the same crystal structure, namely dichlorido({6,6'-[(ethane-1,2-diylbis(methylazanediyl)]bis(methylene)}bis(2,4-di-tert-butylphenol))palladium(II) chlorido(2,4-di-tert-butyl-6-{[(2-{[(3,5-di-tert-butyl-2-hydroxyphenyl)methyl](methyl)amino}ethyl)(methyl)amino]methyl}phenolato)palladium(II) methanol 1.685-solvate 0.315-hydrate, [PdCl2(C34H56N2O2)][PdCl(C34H55N2O2)]·1.685CH3OH·0.315H2O. Both complexes exhibit a square-planar geometry, with unbound phenol moieties participating in intermolecular hydrogen bonding with co-crystallized water and methanol. The presence of both κ2 and κ3 coordination modes arising from the same solution suggest a dynamic process in which phenol donors may coordinate or dissociate from the metal center, and offers insight into catalyst speciation throughout Pd-mediated processes. The unit cell contains dichlorido({6,6'-[(ethane-1,2-diylbis(methylazanediyl)]bis(methylene)}bis(2,4-di-tert-butylphenol))palladium(II), {(L2)PdCl2}, and chlorido(2,4-di-tert-butyl-6-{[(2-{[(3,5-di-tert-butyl-2-hydroxyphenyl)methyl](methyl)amino}ethyl)(methyl)amino]methyl}phenolato)palladium(II), {(L2X)PdCl}, molecules as well as fractional water and methanol solvent molecules. Full Article text
mine Crystal structure and Hirshfeld surface analysis of bis(benzoato-κ2O,O')[bis(pyridin-2-yl-κN)amine]nickel(II) By scripts.iucr.org Published On :: 2019-08-13 A new mononuclear NiII complex with bis(pyridin-2-yl)amine (dpyam) and benzoate (benz), [Ni(C7H5O2)2(C10H9N3)], crystallizes in the monoclinic space group P21/c. The NiII ion adopts a cis-distorted octahedral geometry with an [NiN2O4] chromophore. In the crystal, the complex molecules are linked together into a one-dimensional chain by symmetry-related π–π stacking interactions [centroid-to-centroid distance = 3.7257 (17) Å], along with N—H⋯O and C—H⋯O hydrogen bonds. The crystal packing is further stabilized by C—H⋯π interactions, which were investigated by Hirshfeld surface analysis. Full Article text
mine Crystal structure of catena-poly[[[bis(3-oxo-1,3-diphenylprop-1-enolato-κ2O,O')zinc(II)]-μ2-tris[4-(pyridin-3-yl)phenyl]amine-κ2N:N'] tetrahydrofuran monosolvate] By scripts.iucr.org Published On :: 2019-09-10 The reaction of bis(3-oxo-1,3-diphenylprop-1-enolato-κ2O,O')zinc(II), [Zn(dbm)2], with tris[4-(pyridin-3-yl)phenyl]amine (T3PyA) in tetrahydrofuran (THF) afforded the title crystalline coordination polymer, {[Zn(C15H11O2)2(C33H24N4)]·C4H8O}n. The asymmetric unit contains two independent halves of Zn(dbm)2, one T3PyA and one THF. Each ZnII atom is located on an inversion centre and adopts an elongated octahedral coordination geometry, ligated by four O atoms of two dbm ligands in equatorial positions and by two N atoms of pyridine moieties from two different bridging T3PyA ligands in axial positions. The crystal packing shows a one-dimensional polymer chain in which the two pyridyl groups of the T3PyA ligand bridge two independent Zn atoms of Zn(dbm)2. In the crystal, the coordination polymer chains are linked via C—H⋯π interactions into a sheet structure parallel to (010). The sheets are cross-linked via further C—H⋯π interactions into a three-dimensional network. The solvate THF molecule shows disorder over two sets of atomic sites having occupancies of 0.631 (7) and 0.369 (7). Full Article text
mine Crystal structure and Hirshfeld surface analysis of N-(tert-butyl)-2-(phenylethynyl)imidazo[1,2-a]pyridin-3-amine By scripts.iucr.org Published On :: 2019-09-27 The bicyclic imidazo[1,2-a]pyridine core of the title compound, C19H19N3, is relatively planar with an r.m.s. deviation of 0.040 Å. The phenyl ring is inclined to the mean plane of the imidazo[1,2-a]pyridine unit by 18.2 (1)°. In the crystal, molecules are linked by N—H⋯H hydrogen bonds, forming chains along the c-axis direction. The chains are linked by C—H⋯π interactions, forming slabs parallel to the ac plane. The Hirshfeld surface analysis and fingerprint plots reveal that the crystal structure is dominated by H⋯H (54%) and C⋯H/H⋯C (35.6%) contacts. The crystal studied was refined as an inversion twin Full Article text
mine Crystal structure and luminescence properties of 2-[(2',6'-dimethoxy-2,3'-bipyridin-6-yl)oxy]-9-(pyridin-2-yl)-9H-carbazole By scripts.iucr.org Published On :: 2019-10-22 In the title compound, C29H22N4O3, the carbazole system forms a dihedral angle of 68.45 (3)° with the mean plane of the bipyridine ring system. The bipyridine ring system, with two methoxy substituents, is approximately planar (r.m.s. deviation = 0.0670 Å), with a dihedral angle of 7.91 (13)° between the planes of the two pyridine rings. Intramolecular C—H⋯O/N hydrogen bonds may promote the planarity of the bipyridyl ring system. In the pyridyl-substituted carbazole fragment, the pyridine ring is tilted by 56.65 (4)° with respect to the mean plane of the carbazole system (r.m.s. deviation = 0.0191 Å). In the crystal, adjacent molecules are connected via C—H⋯O/N hydrogen bonds and C—H⋯π interactions, resulting in the formation of a three-dimensional (3D) supramolecular network. In addition, the 3D structure contains intermolecular π–π stacking interactions, with centroid–centroid distances of 3.5634 (12) Å between pyridine rings. The title compound exhibits a high energy gap (3.48 eV) and triplet energy (2.64 eV), indicating that it could be a suitable host material in organic light-emitting diode (OLED) applications. Full Article text
mine Crystal structure and photoluminescence properties of catena-poly[[bis(1-benzyl-1H-imidazole-κN3)cadmium(II)]-di-μ-azido-κ4N1:N3] By scripts.iucr.org Published On :: 2019-10-29 The new title one-dimensional CdII coordination polymer, [Cd(C10H10N2)2(μ1,3-N3)2]n, has been synthesized and structurally characterized by single-crystal X-ray diffraction. The asymmetric unit consists of a CdII ion, one azide and one 1-benzylimidazole (bzi) ligand. The CdII ion is located on an inversion centre and is surrounded in a distorted octahedral coordination sphere by six N atoms from four symmetry-related azide ligands and two symmetry-related bzi ligands. The CdII ions are linked by double azide bridging ligands within a μ1,3-N3 end-to-end (EE) coordination mode, leading to a one-dimensional linear structure extending parallel to [100]. The supramolecular framework is stabilized by the presence of weak C—H⋯N interactions, π–π stacking [centroid-to-centroid distance of 3.832 (2) Å] and C—H⋯π interactions between neighbouring chains. Full Article text
mine Crystal structure and Hirshfeld surface analysis of a copper(II) complex with ethylenediamine and non-coordinated benzoate By scripts.iucr.org Published On :: 2020-01-01 In the title compound, diaquabis(ethylenediamine-κ2N,N')copper(II) bis(2-nitrobenzoate), [Cu(C2H8N2)2(H2O)2](C7H4NO4)2, two diaquabis(ethylenediamine)copper(II) cations and four nitrobenzoate anions are present in the asymmetric unit. All four anions are `whole-molecule' disordered over two sets of sites. The major components have refined occupancies of 0.572 (13), 0.591 (9), 0.601 (9) and 0.794 (10). The CuII ions exhibit slightly distorted octahedral geometries. In the crystal, cations and anions are connected to each other via N—H⋯O and O—H⋯O hydrogen bonds, forming a two-dimensional network parallel to (200). The intermolecular contacts in the crystal were further analysed using Hirshfeld surface analysis, which indicates that the most significant contacts are O⋯H/H⋯O (42.9%), followed by H⋯H (35.7%), C⋯H/H⋯C (14.2%), C⋯C (2.9%), C⋯O/O⋯C (2.2%), N⋯H/H⋯N (0.9%) and N⋯O/O⋯N (0.3%). Full Article text
mine (E)-{[(Butylsulfanyl)methanethioyl]amino}(4-methoxybenzylidene)amine: crystal structure and Hirshfeld surface analysis By scripts.iucr.org Published On :: 2020-01-17 The title hydrazine carbodithioate, C13H18N2OS2, is constructed about a central and almost planar C2N2S2 chromophore (r.m.s. deviation = 0.0263 Å); the terminal methoxybenzene group is close to coplanar with this plane [dihedral angle = 3.92 (11)°]. The n-butyl group has an extended all-trans conformation [torsion angles S—Cm—Cm—Cm = −173.2 (3)° and Cm—Cm—Cm—Cme = 180.0 (4)°; m = methylene and me = methyl]. The most prominent feature of the molecular packing is the formation of centrosymmetric eight-membered {⋯HNCS}2 synthons, as a result of thioamide-N—H⋯S(thioamide) hydrogen bonds; these are linked via methoxy-C–H⋯π(methoxybenzene) interactions to form a linear supramolecular chain propagating along the a-axis direction. An analysis of the calculated Hirshfeld surfaces and two-dimensional fingerprint plots point to the significance of H⋯H (58.4%), S⋯H/H⋯S (17.1%), C⋯H/H⋯C (8.2%) and O⋯H/H⋯O (4.9%) contacts in the packing. The energies of the most significant interactions, i.e. the N—H⋯S and C—H⋯π interactions have their most significant contributions from electrostatic and dispersive components, respectively. The energies of two other identified close contacts at close to van der Waals distances, i.e. a thione–sulfur and methoxybenzene–hydrogen contact (occurring within the chains along the a axis) and between methylene-H atoms (occurring between chains to consolidate the three-dimensional architecture), are largely dispersive in nature. Full Article text
mine Bulky 2,6-disubstituted aryl siloxanes and a disilanamine By scripts.iucr.org Published On :: 2020-02-06 The crystal structures of 5-bromo-1,3-di-tert-butyl-2-[(trimethylsilyl)oxy]benzene, C17H29BrOSi, (I), 1,3-di-tert-butyl-2-[(trimethylsilyl)oxy]benzene, C17H30OSi, (II), and N-(2,6-diisopropylphenyl)-1,1,1-trimethyl-N-(trimethylsilyl)silanamine, C18H35NSi2, (III), are reported. Compound (I) crystallizes in space group P21/c with Z' = 1, (II) in Pnma with Z' = 0.5 and (III) in Cmcm with Z' = 0.25. Consequently, the molecules of (II) are constrained by m and those of (III) by m2m site symmetries. Despite this, both (I) and (II) are distorted towards mild boat conformations, as is typical of 2,6-di-tert-butyl-substituted phenyl compounds, reflecting the high local steric pressure of the flanking alkyl groups. Compound (III) by contrast is planar and symmetric, and this lack of distortion is compatible with the lower steric pressure of the flanking 2,6-diisopropyl substituents. Full Article text
mine Structural and luminescent properties of co-crystals of tetraiodoethylene with two azaphenanthrenes By scripts.iucr.org Published On :: 2020-02-25 Two new co-crystals, tetraiodoethylene–phenanthridine (1/2), 0.5C2I4·C13H9N (1) and tetraiodoethylene–benzo[f]quinoline (1/2), 0.5C2I4·C13H9N (2), were obtained from tetraiodoethylene and azaphenanthrenes, and characterized by IR and fluorescence spectroscopy, elemental analysis and X-ray crystallography. In the crystal structures, C—I⋯π and C—I⋯N halogen bonds link the independent molecules into one-dimensional chains and two-dimensional networks with subloops. In addition, the planar azaphenanthrenes lend themselves to π–π stacking and C—H⋯π interactions, leading to a diversity of supramolecular three-dimensional structural motifs being formed by these interactions. Luminescence studies show that co-crystals 1 and 2 exhibit distinctly different luminescence properties in the solid state at room temperature. Full Article text
mine Crystal structure and photoluminescent properties of bis(4'-chloro-2,2':6',2''-terpyridyl)cobalt(II) dichloride tetrahydrate By scripts.iucr.org Published On :: 2020-03-05 In the title hydrated complex, [Co(C15H10ClN3)2]Cl2·4H2O, the complete dication is generated by overline{4} symmetry. The CoN6 moiety shows distortion from regular octahedral geometry with the trans bond angles of two N—Co—N units being 160.62 (9)°. In the crystal, O—H⋯Cl and C—H⋯O interactions link the components into (001) sheets. The title compound exhibits blue-light emission, as indicated by photoluminescence data, and a HOMO–LUMO energy separation of 2.23 eV was obtained from its diffuse reflectance spectrum. Full Article text
mine Structure of a push–pull olefin prepared by ynamine hydroboration with a borandiol ester By scripts.iucr.org Published On :: 2020-04-21 N-[(Z)-2-(2H-1,3,2-Benzodioxaborol-2-yl)-2-phenylethenyl]-N-(propan-2-yl)aniline, C23H22BNO2, contains a C=C bond that is conjugated with a donor and an acceptor group. An analysis that included similar push–pull olefins revealed that bond lengths in their B—C=C—N core units correlate with the perceived acceptor and donor strength of the groups. The two phenyl groups in the molecule are rotated with respect to the plane that contains the BCCN atoms, and are close enough for significant π-stacking. Definite characterization of the title compound demonstrates, for the first time in a reliable way, that hydroboration of ynamines with borandiol esters is feasible. Compared to olefin hydroboration with borane, the ynamine substrate is activated enough to undergo reaction with the less active hydroboration reagent catecholborane. Full Article text
mine Atomic structures determined from digitally defined nanocrystalline regions By scripts.iucr.org Published On :: 2020-04-10 Nanocrystallography has transformed our ability to interrogate the atomic structures of proteins, peptides, organic molecules and materials. By probing atomic level details in ordered sub-10 nm regions of nanocrystals, scanning nanobeam electron diffraction extends the reach of nanocrystallography and in principle obviates the need for diffraction from large portions of one or more crystals. Scanning nanobeam electron diffraction is now applied to determine atomic structures from digitally defined regions of beam-sensitive peptide nanocrystals. Using a direct electron detector, thousands of sparse diffraction patterns over multiple orientations of a given crystal are recorded. Each pattern is assigned to a specific location on a single nanocrystal with axial, lateral and angular coordinates. This approach yields a collection of patterns that represent a tilt series across an angular wedge of reciprocal space: a scanning nanobeam diffraction tomogram. Using this diffraction tomogram, intensities can be digitally extracted from any desired region of a scan in real or diffraction space, exclusive of all other scanned points. Intensities from multiple regions of a crystal or from multiple crystals can be merged to increase data completeness and mitigate missing wedges. It is demonstrated that merged intensities from digitally defined regions of two crystals of a segment from the OsPYL/RCAR5 protein produce fragment-based ab initio solutions that can be refined to atomic resolution, analogous to structures determined by selected-area electron diffraction. In allowing atomic structures to now be determined from digitally outlined regions of a nanocrystal, scanning nanobeam diffraction tomography breaks new ground in nanocrystallography. Full Article text
mine Non-merohedral twinning: from minerals to proteins By scripts.iucr.org Published On :: 2019-11-19 In contrast to twinning by merohedry, the reciprocal lattices of the different domains of non-merohedral twins do not overlap exactly. This leads to three kinds of reflections: reflections with no overlap, reflections with an exact overlap and reflections with a partial overlap of a reflection from a second domain. This complicates the unit-cell determination, indexing, data integration and scaling of X-ray diffraction data. However, with hindsight it is possible to detwin the data because there are reflections that are not affected by the twinning. In this article, the successful solution and refinement of one mineral, one organometallic and two protein non-merohedral twins using a common strategy are described. The unit-cell constants and the orientation matrices were determined by the program CELL_NOW. The data were then integrated with SAINT. TWINABS was used for scaling, empirical absorption corrections and the generation of two different data files, one with detwinned data for structure solution and refinement and a second one for (usually more accurate) structure refinement against total integrated intensities. The structures were solved by experimental phasing using SHELXT for the first two structures and SHELXC/D/E for the two protein structures; all models were refined with SHELXL. Full Article text
mine High-dynamic-range transmission-mode detection of synchrotron radiation using X-ray excited optical luminescence in diamond By scripts.iucr.org Published On :: 2020-03-13 Enhancement of X-ray excited optical luminescence in a 100 µm-thick diamond plate by introduction of defect states via electron beam irradiation and subsequent high-temperature annealing is demonstrated. The resulting X-ray transmission-mode scintillator features a linear response to incident photon flux in the range 7.6 × 108 to 1.26 × 1012 photons s−1 mm−2 for hard X-rays (15.9 keV) using exposure times from 0.01 to 5 s. These characteristics enable a real-time transmission-mode imaging of X-ray photon flux density without disruption of X-ray instrument operation. Full Article text
mine Correlative vibrational spectroscopy and 2D X-ray diffraction to probe the mineralization of bone in phosphate-deficient mice By scripts.iucr.org Published On :: 2019-08-23 Bone crystallite chemistry and structure change during bone maturation. However, these properties of bone can also be affected by limited uptake of the chemical constituents of the mineral by the animal. This makes probing the effect of bone-mineralization-related diseases a complicated task. Here it is shown that the combination of vibrational spectroscopy with two-dimensional X-ray diffraction can provide unparalleled information on the changes in bone chemistry and structure associated with different bone pathologies (phosphate deficiency) and/or health conditions (pregnancy, lactation). Using a synergistic analytical approach, it was possible to trace the effect that changes in the remodelling regime have on the bone mineral chemistry and structure in normal and mineral-deficient (hypophosphatemic) mice. The results indicate that hypophosphatemic mice have increased bone remodelling, increased carbonate content and decreased crystallinity of the bone mineral, as well as increased misalignment of crystallites within the bone tissue. Pregnant and lactating mice that are normal and hypophosphatemic showed changes in the chemistry and misalignment of the apatite crystals that can be related to changes in remodelling rates associated with different calcium demand during pregnancy and lactation. Full Article text
mine Synthesis, crystal structure, polymorphism and microscopic luminescence properties of anthracene derivative compounds By journals.iucr.org Published On :: Crystal structure and microscopic optical properties of anthracene derivative compounds have been investigated by single-crystal synchrotron X-ray diffraction, laser confocal microscopy and fluorescence lifetime imaging microscopy. Full Article text
mine Scientists Determine Geese Involved in Hudson River Plane Crash Were Migratory By insider.si.edu Published On :: Fri, 10 Jul 2009 15:06:43 +0000 Scientists at the Smithsonian Institution examined the feather remains from the Jan. 15, 2009, US Airways Flight 1549 bird strike to determine not only the species, but also that the Canada geese involved were from a migratory, rather than resident, population. This knowledge is essential for wildlife professionals to develop policies and techniques that will reduce the risk of future collisions. The team’s findings were published in the journal “Frontiers in Ecology and the Environment” in June. The post Scientists Determine Geese Involved in Hudson River Plane Crash Were Migratory appeared first on Smithsonian Insider. Full Article Research News Science & Nature bird strikes birds conservation biology Feather Identification Lab Migratory Bird Center migratory birds Museum Conservation Institute National Museum of Natural History Smithsonian's National Zoo
mine Smithsonian ecologists to examine “dead zones” in Chesapeake Bay with $1.4 million NOAA grant By insider.si.edu Published On :: Mon, 27 Sep 2010 18:55:16 +0000 Breitburg and her team want to determine just how much stress they cause. Over the next five years they will conduct a series of lab and field experiments that examine how diel-cycling hypoxia and the associated acidification affects the growth and disease rates in striped bass, the eastern oyster and other ecologically and economically important Chesapeake Bay species. They will also study the animals’ behavioral responses to these changes. The post Smithsonian ecologists to examine “dead zones” in Chesapeake Bay with $1.4 million NOAA grant appeared first on Smithsonian Insider. Full Article Marine Science Research News Science & Nature agriculture biodiversity carbon dioxide Chesapeake Bay climate change conservation conservation biology ocean acidification Smithsonian Environmental Research Center
mine New study examines how planetesimals influence the development of a planetary system By insider.si.edu Published On :: Mon, 31 Jan 2011 20:09:38 +0000 In a new paper, Harvard-Smithsonian Center for Astrophysics astronomer Hagai Perets studies the role of binary planetesimals--clumps that orbit each other and jointly mature via three basic processes. The post New study examines how planetesimals influence the development of a planetary system appeared first on Smithsonian Insider. Full Article Research News Science & Nature Space planets
mine Changes in vegetation determine how animals migrate, scientists find in new National Zoo study By insider.si.edu Published On :: Thu, 12 May 2011 12:42:42 +0000 The predictability and scale of seasonal changes in a habitat help determine the distance migratory species move and whether the animals always travel together to the same place or independently to different locations. The post Changes in vegetation determine how animals migrate, scientists find in new National Zoo study appeared first on Smithsonian Insider. Full Article Animals Research News Science & Nature conservation conservation biology endangered species mammals Smithsonian's National Zoo
mine New 20-foot extinct species of crocodile discovered in Colombian coal mine By insider.si.edu Published On :: Thu, 15 Sep 2011 13:24:49 +0000 University of Florida and Smithsonian Tropical Research Institute scientists describe a new 20-foot extinct species of crocodile discovered in the same Colombian coal mine with Titanoboa, the world’s largest snake. The post New 20-foot extinct species of crocodile discovered in Colombian coal mine appeared first on Smithsonian Insider. Full Article Dinosaurs & Fossils Science & Nature Caribbean Colombia crocodiles extinction fossils geology new species prehistoric snakes South America Tropical Research Institute
mine New study determines bill size in birds varies according to climate By insider.si.edu Published On :: Mon, 30 Jul 2012 13:21:59 +0000 Scientists determine there is more to the shape and length of bird bills than just how they “get the worm.” The post New study determines bill size in birds varies according to climate appeared first on Smithsonian Insider. Full Article Animals Science & Nature birds conservation conservation biology Feather Identification Lab migratory birds Smithsonian Conservation Biology Institute Smithsonian's National Zoo
mine Smithsonian scientists launch 100-year project to examine the future of forests By insider.si.edu Published On :: Mon, 08 Apr 2013 11:08:56 +0000 A century from now researchers will gather data from a forest in Maryland to see how, during the previous 100 years, varying levels of species […] The post Smithsonian scientists launch 100-year project to examine the future of forests appeared first on Smithsonian Insider. Full Article Marine Science Research News Science & Nature biodiversity Chesapeake Bay conservation conservation biology Smithsonian Environmental Research Center
mine Give us the telescopes and we’ll find the asteroid mines! By insider.si.edu Published On :: Thu, 27 Feb 2014 13:47:37 +0000 An 880-pound asteroid moving at 38,000 miles per hour hit the moon last September with a blast equivalent to 15 tons of TNT. While errant […] The post Give us the telescopes and we’ll find the asteroid mines! appeared first on Smithsonian Insider. Full Article Q & A Research News Science & Nature Space asteroids astronomy astrophysics Center for Astrophysics | Harvard & Smithsonian geology rocks & minerals Smithsonian Astrophysical Observatory
mine Study determines microscopic water bears will be Earth’s last survivors By insider.si.edu Published On :: Wed, 19 Jul 2017 16:53:32 +0000 The world’s most indestructible species, the tardigrade, an eight-legged micro-animal, also known as the water bear, will survive until the Sun dies, according to a […] The post Study determines microscopic water bears will be Earth’s last survivors appeared first on Smithsonian Insider. Full Article Animals Marine Science Research News Science & Nature Space Spotlight asteroids astronomy astrophysics Center for Astrophysics | Harvard & Smithsonian extinction Smithsonian Astrophysical Observatory
mine Structure–function study of AKR4C14, an aldo-keto reductase from Thai jasmine rice (Oryza sativa L. ssp. indica cv. KDML105) By scripts.iucr.org Published On :: 2020-04-23 Aldo-keto reductases (AKRs) are NADPH/NADP+-dependent oxidoreductase enzymes that metabolize an aldehyde/ketone to the corresponding alcohol. AKR4C14 from rice exhibits a much higher efficiency in metabolizing malondialdehyde (MDA) than do the Arabidopsis enzymes AKR4C8 and AKR4C9, despite sharing greater than 60% amino-acid sequence identity. This study confirms the role of rice AKR4C14 in the detoxification of methylglyoxal and MDA, and demonstrates that the endogenous contents of both aldehydes in transgenic Arabidopsis ectopically expressing AKR4C14 are significantly lower than their levels in the wild type. The apo structure of indica rice AKR4C14 was also determined in the absence of the cofactor, revealing the stabilized open conformation. This is the first crystal structure in AKR subfamily 4C from rice to be observed in the apo form (without bound NADP+). The refined AKR4C14 structure reveals a stabilized open conformation of loop B, suggesting the initial phase prior to cofactor binding. Based on the X-ray crystal structure, the substrate- and cofactor-binding pockets of AKR4C14 are formed by loops A, B, C and β1α1. Moreover, the residues Ser211 and Asn220 on loop B are proposed as the hinge residues that are responsible for conformational alteration while the cofactor binds. The open conformation of loop B is proposed to involve Phe216 pointing out from the cofactor-binding site and the opening of the safety belt. Structural comparison with other AKRs in subfamily 4C emphasizes the role of the substrate-channel wall, consisting of Trp24, Trp115, Tyr206, Phe216, Leu291 and Phe295, in substrate discrimination. In particular, Leu291 could contribute greatly to substrate selectivity, explaining the preference of AKR4C14 for its straight-chain aldehyde substrate. Full Article text
mine LDL uptake-dependent phosphatidylethanolamine translocation to the cell surface promotes fusion of osteoclast-like cells [RESEARCH ARTICLE] By jcs.biologists.org Published On :: 2020-04-15T01:46:56-07:00 Victor J. F. Kitano, Yoko Ohyama, Chiyomi Hayashida, Junta Ito, Mari Okayasu, Takuya Sato, Toru Ogasawara, Maki Tsujita, Akemi Kakino, Jun Shimada, Tatsuya Sawamura, and Yoshiyuki HakedaOsteoporosis is associated with vessel diseases attributed to hyperlipidemia, and bone resorption by multinucleated osteoclasts is related to lipid metabolism. In this study, we generated low-density lipoprotein receptor (LDLR)/lectin-like oxidized LDL receptor-1 (LOX-1) double knockout (dKO) mice. We found that, like LDLR single KO (sKO), LDLR/LOX-1 dKO impaired cell-cell fusion of osteoclast-like cells (OCLs). LDLR/LOX-1 dKO and LDLR sKO preosteoclasts exhibited decreased uptake of LDL. The cell surface cholesterol levels of both LDLR/LOX-1 dKO and LDLR sKO osteoclasts were lower than the levels of wild-type OCLs. Additionally, the amount of phosphatidylethanolamine (PE) on the cell surface was attenuated in LDLR/LOX-1 dKO and LDLR sKO pre-OCLs, while the PE distribution in wild-type OCLs was concentrated on the filopodia in contact with neighboring cells. Abrogation of the ATP binding cassette G1 (ABCG1) transporter, which transfers PE to the cell surface, caused decreased PE translocation to the cell surface and subsequent cell-cell fusion. The findings of this study indicate the involvement of a novel cascade (LDLR~ABCG1~PE translocation to cell surface~cell-cell fusion) in multinucleation of OCLs. Full Article
mine Book Review: Planetary Tectonics examines otherworldly landforms By insider.si.edu Published On :: Mon, 05 Apr 2010 15:06:19 +0000 The number and diversity of tectonic landforms in our solar system “is truly remarkable,” Watters and Schultz write. Photographs of these structures have stimulated a range of scholarly investigations. The post Book Review: Planetary Tectonics examines otherworldly landforms appeared first on Smithsonian Insider. Full Article Book Review Earth Science Research News Science & Nature Space astrophysics National Air and Space Museum planets rocks & minerals
mine Rolled-Up Mystery Mineral may cause Craving for Piroulines By insider.si.edu Published On :: Fri, 17 Apr 2015 13:09:32 +0000 Forget what you thought you knew about geology. Some minerals can roll up like flaky Belgian piroulines. For the last several decades, mining operations in […] The post Rolled-Up Mystery Mineral may cause Craving for Piroulines appeared first on Smithsonian Insider. Full Article Earth Science Research News Science & Nature geology National Museum of Natural History rocks & minerals
mine Glittering, mesmerizing, lifesaving: Hospital exhibit showcases minerals used in medicine By insider.si.edu Published On :: Mon, 17 Oct 2016 16:51:14 +0000 Have an upset stomach? Pop a chalky, chewable antacid. Maybe you’ve got a painful cut or burn. No problem; reach for a healing ointment or […] The post Glittering, mesmerizing, lifesaving: Hospital exhibit showcases minerals used in medicine appeared first on Smithsonian Insider. Full Article Earth Science Science & Nature National Museum of Natural History
mine Smithsonian team examines African remains from a colonial burial site in Maryland By insider.si.edu Published On :: Mon, 28 Sep 2009 05:58:22 +0000 Forensic anthropologists from the Smithsonian's National Museum of Natural History discover African remains at a Colonial burial site in Maryland. Follow them as they study the remains, reconstruct the face and body, and share what they learn about the African experience in the Chesapeake in the 1600s. The post Smithsonian team examines African remains from a colonial burial site in Maryland appeared first on Smithsonian Insider. Full Article Anthropology Research News Science & Nature Video National Museum of Natural History osteology
mine Device at the Smithsonian Environmental Research Center examines how phytoplankton would react if the ozone layer vanished By insider.si.edu Published On :: Fri, 07 Jan 2011 14:32:30 +0000 The post Device at the Smithsonian Environmental Research Center examines how phytoplankton would react if the ozone layer vanished appeared first on Smithsonian Insider. Full Article Earth Science Marine Science Science & Nature Video biodiversity climate change conservation biology Smithsonian Environmental Research Center
mine Scientists race to determine why vines are taking over forests in the American tropics By insider.si.edu Published On :: Mon, 14 Feb 2011 14:07:32 +0000 By pulling together data from eight different studies, we now have irrefutable evidence that vines are on the rise not only in the Amazon, but throughout the American tropics. The post Scientists race to determine why vines are taking over forests in the American tropics appeared first on Smithsonian Insider. Full Article Plants Research News Science & Nature biodiversity climate change conservation conservation biology invasive species Tropical Research Institute
mine Fungi may determine the future of soil carbon By insider.si.edu Published On :: Wed, 08 Jan 2014 18:55:31 +0000 When scientists discuss global change, they often focus on the amount of carbon in the atmosphere and vegetation. But soil contains more carbon than air […] The post Fungi may determine the future of soil carbon appeared first on Smithsonian Insider. Full Article Plants Research News Science & Nature carbon dioxide Center for Tropical Forest Science climate change conservation conservation biology fungi Tropical Research Institute
mine Crystal structure and characterization of a new copper(II) chloride dimer with methyl(pyridin-2-ylmethylidene)amine By journals.iucr.org Published On :: The new copper(II) complex [CuLCl2]2, where L is a product of Schiff base condensation between methylamine and 2-pyridinecarbaldehyde, is built of discrete centrosymmetric dimers. Full Article text
mine Crystal structure and characterization of a new copper(II) chloride dimer with methyl(pyridin-2-ylmethylidene)amine By scripts.iucr.org Published On :: 2020-05-05 The new copper(II) complex, namely, di-μ-chlorido-bis{chlorido[methyl(pyridin-2-ylmethylidene)amine-κ2N,N']copper(II)}, [Cu2Cl4(C7H8N2)2], (I), with the ligand 2-pyridylmethyl-N-methylimine (L, a product of Schiff base condensation between methylamine and 2-pyridinecarbaldehyde) is built of discrete centrosymmetric dimers. The coordination about the CuII ion can be described as distorted square pyramidal. The base of the pyramid consists of two nitrogen atoms from the bidentate chelate L [Cu—N = 2.0241 (9), 2.0374 (8) Å] and two chlorine atoms [Cu—Cl = 2.2500 (3), 2.2835 (3) Å]. The apical position is occupied by another Cl atom with the apical bond being significantly elongated at 2.6112 (3) Å. The trans angles of the base are 155.16 (3) and 173.79 (2)°. The Cu...Cu separation in the dimer is 3.4346 (3) Å. In the crystal structure, the loosely packed dimers are arranged in stacks propagating along the a axis. The X-band polycrystalline 77 K EPR spectrum of (I) demonstrates a typical axial pattern characteristic of mononuclear CuII complexes. Compound (I) is redox active and shows a cyclic voltammetric response with E1/2 = −0.037 V versus silver–silver chloride electrode (SSCE) assignable to the reduction peak of CuII/CuI in methanol as solvent. Full Article text
mine Synthesis, decomposition studies and crystal structure of a three-dimensional CuCN network structure with protonated N-methylethanolamine as the guest cation By scripts.iucr.org Published On :: 2020-04-17 The compound poly[2-hydroxy-N-methylethan-1-aminium [μ3-cyanido-κ3C:C:N-di-μ-cyanido-κ4C:N-dicuprate(I)]], {(C3H10NO)[Cu2(CN)3]}n or [meoenH]Cu2(CN)3, crystallizes in the tetragonal space group P43. The structure consists of a three-dimensional (3D) anionic CuICN network with noncoordinated protonated N-methylethanolamine cations providing charge neutrality. Pairs of cuprophilic Cu atoms are bridged by the C atoms of μ3-cyanide ligands, which link these units into a 43 spiral along the c axis. The spirals are linked together into a 3D anionic network by the two other cyanide groups. The cationic moieties are linked into their own 43 spiral via N—H⋯O and O—H⋯O hydrogen bonds, and the cations interact with the 3D network via an unusual pair of N—H⋯N hydrogen bonds to one of the μ2-cyanide groups. Thermogravimetric analysis indicates an initial loss of the base cation and one cyanide as HCN at temperatures in the range 130–250 °C to form CuCN. We show how loss of a specific cyanide group from the 3D CuCN structure could form the linear CuCN structure. Further heating leaves a residue of elemental copper, isolated as the oxide. Full Article text
mine The Fedorov–Groth law revisited: complexity analysis using mineralogical data By journals.iucr.org Published On :: Using mineralogical data, it is demonstrated that chemical simplicity measured as an amount of Shannon information per atom on average corresponds to higher symmetry measured as an order of the point group of a mineral, which provides a modern formulation of the Fedorov–Groth law. Full Article text
mine More Data Needed to Determine if Contaminated Polio Vaccine From 1955-1963 Causes Cancer in Adults Today By feedproxy.google.com Published On :: Tue, 22 Oct 2002 05:00:00 GMT Scientific evidence is insufficient to prove or disprove the theory that exposure to polio vaccine contaminated with a monkey virus between 1955 and 1963 has triggered cancer in humans, says a new report from the Institute of Medicine of the National Academies. Full Article
mine Report Examines Hidden Costs of Energy Production and Use By feedproxy.google.com Published On :: Mon, 19 Oct 2009 05:00:00 GMT A new report from the National Research Council examines and, when possible, estimates hidden costs of energy production and use. Full Article
mine Report Examines Options for Detecting and Countering Near-Earth Objects By feedproxy.google.com Published On :: Fri, 22 Jan 2010 06:00:00 GMT A new report from the National Research Council lays out options NASA could follow to detect more near-Earth objects (NEOs) – asteroids and comets that could pose a hazard if they cross Earths orbit. Full Article
mine Analysis Used by Federal Agencies to Set Fuel Economy and Greenhouse Gas Standards for U.S. Cars Was Generally of High Quality - Some Technologies and Issues Should Be Re-examined By feedproxy.google.com Published On :: Thu, 18 Jun 2015 05:00:00 GMT The analysis used by federal agencies to set standards for fuel economy and greenhouse gas emissions for new U.S. light-duty vehicles -- passenger cars and light trucks -- from 2017 to 2025 was thorough and of high caliber overall, says a new report from the National Research Council. Full Article
mine New Report Examines Implications of Growing Gap in Life Span by Income for Entitlement Programs By feedproxy.google.com Published On :: Thu, 17 Sep 2015 05:00:00 GMT As the gap in life expectancy between the highest and lowest earners in the U.S. has widened over time, high earners have disproportionately received larger lifetime benefits from government programs such as Social Security and Medicare, says a new congressionally mandated report from the National Academies of Sciences, Engineering, and Medicine. Full Article
mine Congress Should Create Commission to Examine the Protection of Human Participants in Research By feedproxy.google.com Published On :: Wed, 29 Jun 2016 05:00:00 GMT A new report from the National Academies of Sciences, Engineering, and Medicine that examines the regulations governing federally funded research recommends that Congress authorize and the president appoint an independent national commission to examine and update the ethical, legal, and institutional frameworks governing research involving human subjects. Full Article
mine New Report Examines Molybdenum-99 Production and Use By feedproxy.google.com Published On :: Mon, 12 Sep 2016 05:00:00 GMT Although the current supply of molybdenum-99 and technetium-99m – isotopes used worldwide in medical diagnostic imaging – is sufficient to meet domestic and global demand, changes to the supply chain before year-end could lead to severe shortages and impact the delivery of medical care, says a new report by the National Academies of Sciences, Engineering, and Medicine. Full Article
mine New Report Examines Role of Engineering Technology, Calls for Increased Awareness of Field of Study and Employment By feedproxy.google.com Published On :: Wed, 15 Feb 2017 06:00:00 GMT While workers in the engineering technology (ET) field play an important role in supporting U.S. technical infrastructure and the country’s capacity for innovation, there is little awareness of ET as a field of study or category of employment in the U.S., says a new report from the National Academy of Engineering. Full Article
mine New Report Examines the Impact of Undergraduate Research Experiences for STEM Students By feedproxy.google.com Published On :: Thu, 23 Feb 2017 06:00:00 GMT The call for expanding undergraduates’ access to research experiences in science, technology, engineering, and mathematics (STEM) raises questions about their use and potential to increase students’ interest and persistence in these disciplines. Full Article
mine New Report Examines How Assistive Technologies Can Enhance Work Participation for People With Disabilities By feedproxy.google.com Published On :: Tue, 09 May 2017 05:00:00 GMT Assistive products and technologies – such as wheelchairs, upper-limb prostheses, and hearing and speech devices – hold promise for partially or fully mitigating the effects of impairments and enabling people with disabilities to work, but in some cases environmental and personal factors create additional barriers to employment, says a new report from the National Academies of Sciences, Engineering, and Medicine. Full Article