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Comprehensive encoding of conformational and compositional protein structural ensembles through the mmCIF data structure

In the folded state, biomolecules exchange between multiple conformational states crucial for their function. However, most structural models derived from experiments and computational predictions only encode a single state. To represent biomolecules accurately, we must move towards modeling and predicting structural ensembles. Information about structural ensembles exists within experimental data from X-ray crystallography and cryo-electron microscopy. Although new tools are available to detect conformational and compositional heterogeneity within these ensembles, the legacy PDB data structure does not robustly encapsulate this complexity. We propose modifications to the macromolecular crystallographic information file (mmCIF) to improve the representation and interrelation of conformational and compositional heterogeneity. These modifications will enable the capture of macromolecular ensembles in a human and machine-interpretable way, potentially catalyzing breakthroughs for ensemble–function predictions, analogous to the achievements of AlphaFold with single-structure prediction.




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The PR Week, 10.10.2024: Courtney Walker, MMC/RXMosaic

Walker talks about campaigns for Discover Puerto Rico and other organizations, as well as her multifaceted agency role.




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DoD ‘fine tunes’ final CMMC program rule, industry turns attention to implementation

The Pentagon made some key tweaks to the final CMMC program rule. Several program watchers said the changes should help simplify a complex compliance program.

The post DoD ‘fine tunes’ final CMMC program rule, industry turns attention to implementation first appeared on Federal News Network.





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The CMMC clock is ticking for the defense industrial base

Carraig Stanwyck, vice president and head of global cybersecurity and compliance at Avnet, explains why preparation for CMMC should start now.

The post The CMMC clock is ticking for the defense industrial base first appeared on Federal News Network.




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Calls for investigation following Gwamanda’s dismissal as MMC for Community Development




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Police, NMMC probe hand behind hoardings against Tukaram Mundhe




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Restrict user access to MMC snap-ins GPO




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NMMC hacks down 100 trees to develop 'tree belt'!


The Vashi plot where NMMC hacked trees and dumped a different soil to prepare for plantation of new trees

Ever heard of trees being hacked to develop a "tree belt"? Perhaps, it happens only in India, in this case, Mumbai. The forest department is livid, and has raised an objection to stop work, after the Navi Mumbai Municipal Corporation hacked down over a 100 trees of rare species without the department's mandatory permission (as the trees fell in the buffer zone of holding ponds).

The ironic justification given for the hacking is the development of a tree belt under the Centre's AMRUT (Atal Mission for Rejuvenation and Urban Transformation). Vashi residents are mighty upset, having watched NMMC officials hack more than 100 trees. A social activist and resident of Navi Mumbai, Rohit Malhotra, said, "We have been keeping an eye on NMMC officials working on this project; so far, nearly a 100 trees, maybe more, have been cut, all done using people's hard-earned money.


The Vashi plot from where NMMC hacked trees

"When I asked NMMC officials why they were cutting trees for a tree belt, they said they wanted to plant 'good and useful' trees, like of fruits and flowers... The hacked trees are local; this soil is suitable for them, not others. Now, they have added debris of a different soil over the natural one... How will they grow and sustain trees of other regions?"

Under AMRUT, NMMC has planned development of a green space in plot no. 45, sector 10 A, Vashi. The R2-crore project will have a plantation of fruit-bearing trees and shrubs, a lawn and walkways. Chief Conservator of Forests N Vasudevan, who heads the department's Mangrove Cell, said, "NMMC has already cut down nearly a hundred trees that were in a buffer zone. They should have taken permission from us. But they didn't acquire an NOC or even sent a request, just suddenly started the work. Hence, we asked their officials to stop."

NMMC Additional Commissioner Mohan Dagaonkar said, "The cut trees are Subabul; these are not indigenous, just wild trees that serve no purpose. We will plant nearly 8,400 fruit- and flower-bearing trees in their place. The forest department has asked us to submit a letter; once we do that, we'll restart the work."

Rs 2crore
Cost of the project

8,400
Number of new trees NMMC plans to plant

Also Read: NMMC Offers Reward To People Who Report Illegal Debris Dumping Within City Limits

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Forest department's axe is on NMMC for plantation, other violations

Forest department is utterly displeased with the way the Navi Mumbai Municipal Corporation (NMMC) is going about implementing its tree belt project. On Friday, a range forest officer carried out a panchnama, a copy of which is with mid-day, listing the violations so far.

The panchnama states that the tree plantation done by NMMC contractors is inappropriate — the forest department had warned that plantation should be at least 50 metres away from the buffer zone surrounding the mangroves; and yet, it has been done right next to the boundary. The contractors have also allegedly cut the grown trees improperly and dumped the debris amid the mangroves.

Seeing red over green
An environment activist of Vashi, Rohit Malhotra, said, "NMMC removed 200 trees from the plot opposite Fortis Hospital, while dozens of fully grown and numbered trees inside the Rajiv Gandhi Joggers Park adjoining this plot have been felled, on the ground that were Subabul trees. All this has been done with much impunity... I had lodged a complaint with Prakesh Choudhary, range forest officer of Thane Division, who then deputed range officer Pandurang Gaikwad to survey the site. Mr Gaikwad has prepared the panchnama."

Residents had emailed their complaint to Dinesh Kumar Jain, chief secretary of Maharashtra, who has forwarded it to secretary of the forest department for necessary action.

A forest officer, confirming all violations, said, "I shouted at the contractors when I saw that some trees that were not on the list had been cut. Also, they removed soil from around others in such a way that the trees have tilted.

"However, senior forest officers have refused to sign the panchnama, saying they will settle the matter." "NMMC had taken permission from us to cut the Subabul trees in June 20... But I didn't know they dumped the debris amid mangroves. Also, the plantation in the buffer zone was done without our knowledge. I will visit the spot and decide on further action," said Choudhary.

The other side
NMMC Commissioner N Ramaswamy said, "We took all required permissions to cut the trees and for the project. About this particular complaint, I will check and take action accordingly."

The violations

  • Planting trees close to mangroves, in violation of buffer zone distance restrictions
  • Hacking full-grown trees inappropriately
  • Dumping the cut parts amid the mangroves

Catch up on all the latest Mumbai news, crime news, current affairs, and also a complete guide on Mumbai from food to things to do and events across the city here. Also download the new mid-day Android and iOS apps to get latest updates





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Colleges to soon require one MMC expert on panel probing negligence

Soon, medical colleges might have to keep one expert from the Maharashtra Medical Council (MMC) to address cases of medical negligence.

MMC wrote to the Directorate of Medical Education and Research (DMER) earlier this month, asking them to implement this across the state. "We have written to DMER, asking them to introduce one council member on the expert panel investigating medical negligence cases in medical colleges. This would help in bringing more transparency and better judgment of orders," said Shivkumar Utture, president of MMC.

Dr TP Lahane, director, DMER confirmed receiving the request, "The proposal is extremely welcoming but before coming to a conclusion, we need to discuss it with the council members." So far, around 500 cases of medical negligence or issues regarding treatment are still pending with the council.

Catch up on all the latest Crime, National, International and Hatke news here. Also download the new mid-day Android and iOS apps to get latest updates






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NMMC’s tally crosses 500 with 43 new cases

8 fresh cases in PMC; Kamothe sealed




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No HC relief for doctor temporarily debarred by MMC for ‘fraud’