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The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Research Assistant to join the existing research team on two EU funded research projects.

The role will require the development and application of methodologies for undertaking systematic literature reviews, quantitative analysis of model outputs, contribution to the writing of research papers, organisation of workshops and large meetings, and the performance of other duties necessary for the successful completion of both the IMPRESSIONS and OPENNESS projects

You will have a Masters or equivalent in an environmental discipline and strong quantitative skills. You must have the ability to undertake systematic literature reviews and synthesise findings and assist in the management of large research projects. Excellent organisational and writing skills are essential.

This is a part-time (50% FTE) post and is available for 24 months.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013.

You can find more information and apply here.

The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Postdoctoral Research Assistant to join the existing research team on two EU funded research projects: IMPRESSIONS and OPENNESS.

The role will require the development of a range of methodological and modelling approaches, including quantitative, qualitative and mixed techniques, to address a number of environmental science challenges in the contexts of operationalising ecosystem services and investigating cross-sectoral climate change impacts and vulnerabilities. The post provides the opportunity for a researcher with skills in programming, GIS and statistics to develop innovative solutions in research areas critical to ensuring the resilience of our future environment and to expand the modelling capability of the ECI team.

You will have a PhD in a discipline relevant to modelling or environmental sciences and a background in programming and modelling. You will have experience of using Geographical Information Systems and a strong grounding in statistics and/or operational research. Excellent communication skills both written and oral are essential. You will be self-motivated, with the ability to work independently.

This post is available for 24 months in the first instance.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013. It is intended that interviews will be held during the week beginning 13 January 2014.

For more information and to apply for this position, click here.

To read more about the courses and to register, visit the official DEST webpage: http://www.taxonomytraining.eu/content/modern-taxonomy-course-programme-2013-2014

An innovative workflow reveals new research potential of the Barcode of Life Data Systems (BOLD). A recently published article in the Biodiversity Data Journal (BDJ) used specimen records downloaded from BOLD in tabular format and imported these into a human-readable text developed in manuscript within the Pensoft Writting Tool (PWT). Data were used to study the species distributions of ten Nearctic species of braconid wasps from the Microgastrinae subfamily.

BOLD is originally designed to support the generation and application of DNA barcode data. However, the repository also holds unexplored treasures of additional data that provide unique potential for many other research uses.

Currently almost 4 million sequences (over 3.4 million of them DNA barcodes) are stored in BOLD, including coverage for more than 143K animal species, 53K plant species, and 16K fungi and other species, and this impressive storage of information is continuing to grow every day.

A team of researchers, led by Dr Jose Fernandez-Triana from the University of Guelph, Canada, have now explored how the unique amount of data stored on the BOLD platform can be utilised for new research purposes. Choosing tiny parasitic wasps for their case study they selected a sample of 630 specimens and 10 North American species. Data stored on BOLD were then used to uncover a significant number of new records of locality, provinces, territories and states.

The research was then secured a fast publication via BDJ, a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind.

"Import of structured data into human-readable text is important but it does not represent the whole story. More importantly, the data can be downloaded straight from the article text by anyone for further re-use, or be automatically exported to data aggregators, such as the Global Biodiversity Information Facility (GBIF). In this way, data platforms could get more peer-reviewed content from scholarly publications and scientists will be properly credited for their efforts" said Prof. Lyubomir Penev, founder of Pensoft Publishers.

Original Source:

Fernandez-Triana J, Penev L, Ratnasingham S, Smith M, Sones J, Telfer A, deWaard J, Hebert P (2014) Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae). Biodiversity Data Journal 2: e4153. doi: 10.3897/BDJ.2.e4153

Additional information:

The workflow is part of the Data Publishing Toolkit elaborated within the EU FP7 funded project EU BON (Grant agreement No 308454).

Data collection and analysis are at the core of modern research, and often take months or even years during which researchers remain uncredited for their contribution. A new plugin to a workflow previously developed by the Global Biodiversity Information Facility (GBIF) and Pensoft, and tested with datasets shared through GBIF and DataONE, now makes it possible to convert metadata into a manuscript for scholarly publications, with a click of a button.

Pensoft has currently implemented the feature for biodiversity, ecological and environmental data. Such records are either published through GBIF or deposited at DataONE, from where the associated metadata can be converted directly into data paper manuscripts within the ARPHA Writing Tool, where the authors may edit and finalize it in collaboration with co-authors and peers and submit it to the Biodiversity Data Journal (BDJ) with another click. Until now, the GBIF metadata have been exported into an RTF file. The new feature will be also part of future Pensoft projects, including the recently announced Research Ideas & Outcomes (RIO) Journaland the forthcoming Ecology and Sustainability Data Journal.

The concept of the data paper was introduced in the early 2000's by the Ecological Society of America in order to solve issues of handling big data and to make the metadata and the corresponding datasets discoverable and citable. It was then brought to the attention of the biodiversity community in 2011 as a result of a joint GBIF and Pensoft project and later implemented in the routine publishing process in all Pensoft journals.

Since then, Pensoft has been working with GBIF, and subsequently DataONE to automate the process of converting metadata into a human-readable data paper format. The novel workflow means that with only a couple of clicks, publishers of datasets on either GBIF, DataONE or any other portal storing metadata in the same format, may submit a manuscript for peer-review and open access citable publication in BDJ.

The process is simple, yet it brings a lot of benefits. Publishing data does not only mean a citable publication and, thus, credit to the authors and the repository itself, but it also provides the option to improve your work and collect opinion though peer-review. BDJ also shortens the distance between "narrative (text)" and "data" publishing.

"Metadata descriptions (e.g., data about the data) are of primary importance for data dissemination, sharing and re-use, as they give essential information on content, scope, purpose, fitness for use, authorship, usage rights, etc. to any potential user. Authoring detailed metadata in repositories can seem a tedious process, however DataONE users will now benefit from direct export of already created metadata into data paper manuscripts and have even better exposure of their work through discoverability mechanisms and scholarly citations," commented Dr Amber Budden, DataONE Director for Community Engagement and Outreach

"It is great to reap the fruits of a process that started back in 2010. The automated streamlining of biodiversity data between repositories and publisher is an elegant feature that makes publishing a data paper an easy and rewarding process to crown scientists data collection efforts and ensure its use and re-use," added Prof. Lyubomir Penev, Managing Director of Pensoft.

More detailed information on how data authors could use the workflow can be found on the Pensoft blog.

References:

Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics. 12(Suppl 15):S2. DOI: 10.1186/1471-2105-12-S15-S2

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

While development and implementation of data publishing and sharing practices and tools have long been among the core activities of the academic publisher Pensoft, it is well-understood that as part of scholarly publishing, open data practices are also currently in transition, and hence, require a lot of collaborative and consistent efforts to establish.

Based on Pensoft's experience, and elaborated and updated during the Framework Program 7 EU BON project, a new paper published in the EU BON dedicated collection in the open science journal Research Ideas and Outcomes (RIO), outlines policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data. Newly accumulated knowledge from large-scale international efforts, such as FORCE11 (Future of Research Communication and e-Scholarship), CODATA (The Committee on Data for Science and Technology), RDA (Research Data Alliance) and others, is also included in the Guidelines.

The present paper discusses some general concepts, including a definition of datasets, incentives to publish data and licences for data publishing. Furthermore, it defines and compares several routes for data publishing, namely: providing supplementary files to research articles; uploading them on specialised open data repositories, where they are linked to the research article; publishing standalone data papers; or making use of integrated narrative and data publishing through online import/download of data into/from manuscripts, such as the workflow provided by the Biodiversity Data Journal. Among the guidelines, there are also comprehensive instructions on preparation and peer review of data intended for publication.

Although currently available for journals using the developed by Pensoft journal publishing platform ARPHA, these strategies and guidelines could be of use for anyone interested in biodiversity data publishing.

Apart from paving the way for a whole new approach in data publishing, the present paper is also a fine example of science done in the open, having been published along with its two pre-submission public peer reviews. The reviews by Drs. Robert Mesibov and Florian Wetzel are both citable via their own Digital Object Identifiers (DOIs).

###

Original source:

Penev L, Mietchen D, Chavan V, Hagedorn G, Smith V, Shotton D, Ó Tuama É, Senderov V, Georgiev T, Stoev P, Groom Q, Remsen D, Edmunds S (2017) Strategies and guidelines for scholarly publishing of biodiversity data. Research Ideas and Outcomes 3: e12431. https://doi.org/10.3897/rio.3.e12431

Distributed European School of Taxonomy (DEST) is organizing a course in Philosophy of Biological Systematics targeted at MSc students, PhD students, early career researchers,  professional systematists/taxonomists and anyone who is interested in the philosophy of Biological Systematics. The course has a duration of one week and will take place between 8-12 September 2014.

Deadline for registration: 16 June 2014, extended until Friday 20 June 2014. To register and to learn more about the course visit the official webpage: http://www.taxonomytraining.eu/content/philosophy-biological-systematics

Approaching the subject from the perspective of the philosophical foundations of scientific inquiry, this course offers critical examinations of the principles required to judge the scientific merits of systematic/taxonomic procedures by way of the following topics:

• The goal of science
• The goal of biological systematics
• Causal relationships in systematics
• The nature of why-questions
• Three forms of reasoning: deduction, induction, abduction
• The uses of deduction, induction, and abduction in science
• Evidence and reasoning
• Fact, theory & hypothesis
• Theory & hypothesis testing
• Systematics involves abductive reasoning
• Inferences of systematics hypotheses, i.e. taxa
• Implications for ‘phylogenetic’ methods
• Causal explanations, not ‘trees’ or cladograms
• Parsimony, likelihood, Bayesianism: are they relevant to abductive reasoning, thus phylogenetic inference?
• The requirement of total evidence
• The errors of cladogram comparisons & character mapping
• Homology, homogeny & homoplasy
• Character coding
• Mechanics of hypothesis testing: implications for cladograms
• Character data cannot test phylogenetic hypotheses
• The nature evidential support
• The proper testing of phylogenetic hypotheses
• The myths of bootstrap, jack-knife & Bremer ‘support’
• Implications for nomenclature
• Defining biodiversity and conservation

Participants will be provided reprints covering the topics in the course, as well as a PDF file with all course slides (>800) and associated notes.

Distributed European School of Taxonomy (DEST) is organizing a Zoological Nomenclature training course targeted at MSc students, PhD students, early career researchers,  professional systematists/taxonomists and anyone who is interested in the philosophy of Biological Systematics. The course has a duration of one 5 days and will take place between 22-26 September 2014 at the Muséum national d'Histoire naturelle, Paris, France.

Deadline for registration: 16 June 2014, extended until Friday 20 June 2014. To register and to learn more about the course visit the official webpage: http://www.taxonomytraining.eu/content/zoological-nomenclature-3

Course description:
Taxonomists need a common language worldwide. This is provided by the international codes of nomenclature. Although several codes exist, according to the organisms at stake, they all follow a similar mode of allocation of names to taxa (through "types") and of establishment of the valid name for a taxon (priority, first-reviser, usage). As biological nomenclature is rarely taught in academic formations, many taxonomists have difficulties mastering it. This training will provide an overview of the history and epistemology of biological nomenclature, and a discussion of the relationships between phylogeny, taxonomy and nomenclature. The zoological code will be presented in detail, the other codes (including the botanical one) more briefly. The recent problems and projects of nomenclature, including alternative systems, will be discussed.

Lecture topics:

• What is taxonomy? What is nomenclature? Name, taxon, nomenclatural rank, taxonomic category. Species and supraspecific taxa. The relationships between phylogeny, taxonomy and nomenclature
• History and epistemology of the international codes of nomenclature
• The international code of zoological nomenclature
• The other international codes (plants and fungi, bacteria, viruses, cultivated plants)
• The alternative nomenclatural systems

Seminar topics:

• Nomenclature of higher taxa in zoology
• The Phylocode and other phylogenetic nomenclatural systems
• Zoobank and electronic publications

Practical experiences will include: exercises in zoological nomenclature and transforming phylogenetic data into a taxonomy and a nomenclature.

Distributed European School of Taxonomy (DEST) is organizing a Botanical Nomenclature training course targeted at MSc students, PhD students, early career researchers,  professional systematists/taxonomists and anyone who is interested in the philosophy of Biological Systematics. The course has a duration of one week and will take place between 26-30 January 2015 at the Royal Botanic Gardens, Kew, UK.

Deadline for registrationis 10 October 2014. Participants will receive notification by 24 October 2014 whether accepted to the course. To register and to learn more about the course visit the official webpage: http://www.taxonomytraining.eu/content/botanical-nomenclature-3

Course description
This in-depth course will teach the principles of plant nomenclature according to the International Code of Nomenclature for algae, fungi and plants (ICN) so that participants can apply good nomenclatural practice when undertaking taxonomic revisions, compiling checklists etc. This will be achieved by lectures illustrated with examples from the ICN, workshop sessions applying what has been learned to "real life" cases, and by encouraging participants to discuss nomenclatural problems they have encountered.

Participants will have time to pursue their own research interests using the collections at Kew, with the emphasis on identifying and solving nomenclatural problems.
Short seminars will give participants the opportunity to present nomenclatural problems relevant to their own research.

The New England-based author of "Nat Enough" has been able to mine enough humor out of pre-teen trauma for five graphic novels — with a sixth on the way.

The post Maria Scrivan is reliving middle school so you don’t have to appeared first on Boston.com.

Earlier this month, PEN issued a report that expands upon numbers released in September for Banned Books Week, when libraries and stores around the country highlighted censored works.

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Being a parent of school-aged children is no small task in the 21st Century. The reasons Christian parents opt to send their children to public school vary. Regardless of why you opt to send your child to a public school, it is important for you to be a vigilant, involved parent.  Proverbs 22:6 (KJV) says, "Train up a child in the way he should go, and when he is old, he will not depart from it." Your child's formative years of moral development are happening concurrently with foundational...

When a blues music aficionado uses the term “old school,” he may be referring to artists such as Muddy Waters, Etta James, John Lee Hooker or B.B. King. When old school country music artists are discussed, names such as Bob Wills, Hank Williams Sr., Jimmie Rogers and Patsy Cline will certainly be mentioned. In this instance, old school is used in a positive way. The inference is that these artists were pioneers in their field and that their contributions have stood the test of time and that their art is still considered relevant, even though it was produced decades ago.

The ACI Foundation announced its 2024-2025 fellowship and scholarship recipients.

The ACI Foundation is now accepting applications from graduate and undergraduate students for the 2025-2026 academic year.

The Refractories Institute announced the 2024 recipients of college scholarships for students pursuing an education related to refractory science. TRI, which is comprised of approximately 50 member-companies that operate in the refractory industry, awards scholarships annually.

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Applying for the SIA RISE Scholarship is open to SIA student members and employees of SIA member companies in North America who are part of the SIA RISE community.

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Everything online in the industry, from white papers to webinars

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ZeroEyes announced that its AI gun detection solution has been selected by West Feliciana Parish Schools (WFPS) to help mitigate gun-related violence.

Sarasota County Schools already completed a successful deployment in one of its high schools the past year, which received overwhelmingly positive results and response from parents and staff, according to the announcement.

Washington – NIOSH is seeking comment on a proposed survey of school workers to gauge the relationship between building conditions and worker health.

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Washington — The Department of Education – together with the departments of Health and Human Services, Justice, and Homeland Security – has launched a new website it calls a “one-stop shop of resources” for K-12 teachers, administrators, parents and law enforcement to identify, prepare for, respond to and mitigate school safety threats.

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