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New version of Euro+Med Plantbase

A new updated version of Euro+Med Plantbase was made available online in the middle of April 2014. For the first time, the economically important gymnosperms (coniferous trees), and the genus Thalictrum, as the first part of the large Ranunculaceae family, are treated in Euro+Med Plantbase.

Euro+Med Plantbase integrates and critically evaluates information from Flora Europaea, Med-Checklist, the Flora of Macaronesia, and from regional and national floras and checklists from the area as well as additional taxonomic and floristic literature. This is complemented by the European taxa of several families taken from the World Checklist of Selected Plant Families and of the Leguminosae from the International Legume Database and Information Service ILDIS. By April 2014 it provides access to 187 plant families, corresponding to ca. 92 % of the European flora of vascular plants.

The Euro+Med Plantbase web portal is accessible at http://ww2.bgbm.org/EuroPlusMed/.

Web services for Euro+Med merged with Fauna Europaea, ERMS, and Index Fungorum are provided by VLIZ at http://www.eu-nomen.eu/portal/webservices.php. The services will be also registered for use in EU BON in summer 2014.

 





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Environment: Commission launches new platform to help resolve social conflicts over large carnivores

Europe's brown bear, wolf, wolverine, lynx – at least one of these species can now be found in 21 EU Member States. After a lengthy period of decline their numbers are growing once more, but coexistence with man can be problematic. In an effort to solve the social and economic problems that sometimes result from this new expansion, the European Commission has launched a platform where farmers, conservationists, hunters, landowners and scientists can exchange ideas and best practices on sharing the same land with large carnivores.

The EU Platform on Coexistence between People and Large Carnivores will support constructive dialogue between key stakeholder organisations at the European level. Launching the platform, EU Environment Commissioner Janez Potočnik said: "We need to treat our natural neighbours with respect – but we also need to heed the concerns of those whose lives are genuinely affected by their close proximity. My warm congratulations to the organisations that have worked together to set up this important platform, which represents a major step forward in efforts to address the issue of peaceful coexistence."

The European Union is home to five species of large carnivores. All suffered dramatic declines in numbers and distribution as a consequence of human activity, but increasing protection and public awareness about their vital role in healthy ecosystems have caused many populations to stabilize or increase, and to return to areas from which they had been absent for decades or even centuries.

While this recovery is seen by some as a great conservation success, it has not been without its opponents. The issue involves a diversity of stakeholders such as hunters, foresters, livestock producers, reindeer herders, landowners, rural communities, conservation organizations and the wider public. These groups are influenced by and perceive large carnivores in different ways, and in some cases these differences can be a source of conflict. The platform will facilitate exchanges of knowledge and promote ways and means to minimize, and wherever possible, find equitable solutions to these conflicts.

The platform launched today follows a number of efforts to understand the conflicts between stakeholders over large carnivores, the results of which were set out in workshops conclusions and in a report.

Next steps

The Platform will hold its first working session immediately following the official launch today, on 10 June. It will adopt terms of reference and a work plan. The Platform will hold one annual meeting and organize additional workshops on selected topics. It will be supported by a web-based resource centre that will serve as the main tool to disseminate information on the activities of the platform, identify good practices in the form of documents or a manual, act as a gateway to the portals of the member organisations, and host media resources such as press kits for journalists.

For more information:

Original press release: http://europa.eu/rapid/press-release_IP-14-648_en.htm

Visit the large carnivore website of DG Environment at http://ec.europa.eu/environment/nature/conservation/species/carnivores/index_en.htm

http://ec.europa.eu/environment/nature/index_en.htm

The signing ceremony and moderated panel discussion is streamed (https://new.livestream.com/corlive1/events/2977474/embed) on the internet (also see http://ec.europa.eu/environment/nature/conservation/species/carnivores/index_en.htm)





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Four new data papers on species traits!

Four papers on species traits have been recently published in ZooKeys, Ecology and Ecology, Evolution and the Biodiversity Data Journal respectivelly covering data on the butterflies in Europe, birds and mammals of the world, the terrestrial mammals of the world and marine polychaetes.

Schweiger O, Harpke A, Wiemers M, Settele J (2014) CLIMBER: Climatic niche characteristics of the butterflies in Europe. ZooKeys 367: 65–84. doi: 10.3897/zookeys.367.6185 Resource ID: GBIF key: http://www.gbif.org/dataset/e2bcea8c-dfea-475e-a4ae-af282b4ea1c5

Hamish Wilman, Jonathan Belmaker, Jennifer Simpson, Carolina de la Rosa, Marcelo M. Rivadeneira, and Walter Jetz. 2014. EltonTraits 1.0: Species-level foraging attributes of the world's birds and mammals. Ecology 95:2027. http://dx.doi.org/10.1890/13-1917.1

Kissling, W. D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel, B., Sandom, C., Trøjelsgaard, K. and Svenning, J.-C. (2014), Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution. doi: 10.1002/ece3.1136

Faulwetter S, Markantonatou V, Pavloudi C, Papageorgiou N, Keklikoglou K, Chatzinikolaou E, Pafilis E, Chatzigeorgiou G, Vasileiadou K, Dailianis T, Fanini L, Koulouri P, Arvanitidis C (2014) Polytraits: A database on biological traits of marine polychaetes. Biodiversity Data Journal 2: e1024. DOI: 10.3897/BDJ.2.e1024





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EU BON announces four new associated partners

EU BON is happy to announce that Memoranda of Understanding have been signed with four new associated partners. The EU BON family is now joined by DataOne (Observation Network for Earth), USA; Fondation pour la Recherche sur la Biodiversité (FRB) / ECOSCOPE, France; Atlas Florae Europaeae (AFE), Finland; and the Natural Environment Centre / SYKE (Finnish Environment Institute), Finland. Welcome to all!

 

DataOne (Observation Network for Earth)

DataONE is the foundation of new innovative environmental science through a distributed framework and sustainable cyberinfrastructure that meets the needs of science and society for open, persistent, robust, and secure access to well-described and easily discovered Earth observational data.

 

Fondation pour la Recherche sur la Biodiversité (FRB) / ECOSCOPE

ECOSCOPE is a national network for long-term observation of biodiversity supported by the French Alliance for Research in Environment. ECOSCOPE aims at coordinating and reinforcing biodiversity observatories through specific actions to contribute to national and global efforts 1 / to support research in understanding and anticipating state and changes in biodiversity and associated ecosystem services and 2 / to provide information and synthesis to support decision making. It has been labelled BON in 2012.

 

Atlas Florae Europaeae (AFE)

Atlas Florae Europaeae (AFE) is a running long-term programme for mapping the distribution of vascular plants in Europe. The project was launched already in 1965 as a collaborative effort of European botanists and since then the Secretariat was established at the Botanical Museum of the Finnish Museum of Natural History, Helsinki.

The original aim of the AFE is to offer complementary maps with taxonomic notes of species and subspecies for the published Flora Europaea.

 

Natural Environment Centre / SYKE (Finnish Environment Institute)

The Finnish Environment Institute (SYKE) promotes the conservation of biodiversity by various measures, e.g. by assessments of the conservation status of species and natural habitats or by research on methods of management and restoration of habitats. An important field of research is the significance of ecosystem services and their interactions with biodiversity. SYKE's tasks also include finding solutions to problems with invasive species, assessment of the environmental impacts of genetically modified organisms and permits for international trade in endangered species.

 

 





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The new CETAF website is now launched

The new Consortium of European Taxonomic Facilities (CETAF) website (www.cetaf.org) is now launched.
 
The new site represents the public face of CETAF, highlighting the consortium, its activities, its achievements and its member institutions as well as giving information on the past and current CETAF initiatives and related projects. The site also gives access to information on the activities and achievements of the current CETAF working commissions, sub-committees and special interest groups (Strategy Group, Digitization Group, European Initiatives Advisory Group, Legislation and Regulations Group, Research Assessment Group, Training and E-Learning Group, Collections Policy Board and the Information Science and Technology Commission).
 
CETAF is an associated partner of EU BON. It is in the process of developing its 10-year strategic programme that will support the development of taxonomy training and e-learning capacity in Europe; focus on natural history specimen management, access and digitisation activities as well as on issues surrounding the creation, management and accessibility of specimen based biodiversity data, both within and beyond the consortium; and centralizing efforts to support taxonomy and taxonomic research within Europe.




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LTER Europe - a new associated partner

EU BON is pleased to welcome a new associated partner Long-Term Ecosystem Research (LTER) Europe to its family!

Long-Term Ecosystem Research (LTER) is an essential component of world-wide efforts to better understand ecosystems. This comprises their structure, functions, and long-term response to environmental, societal and economic drivers. LTER contributes to the knowledge base informing policy and to the development of management options in response to the Grand Challenges under Global Change.

From the beginning (around 2003) the design of LTER-Europe has focussed on the integration of natural sciences and ecosystem research approaches, including the human dimension. LTER-Europe was heavily involved in conceptualizing socio-ecological research (LTSER). As well as LTER Sites, LTER-Europe features LTSER Platforms, acting as test infrastructures for a new generation of ecosystem research across European environmental and socio-economic gradients.

 

 





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EU BON Newsletter, Issue 3 is out!

The third issue of the EU BON newsletter is now out.

This issue contains information about our new associated partners, alongside news from the project, interviews and articles from international and project meetings, as well as announcements for future events of interest.

To download the newsletter, please click on the image below.

It is also available for download in the project’s Media Center alongside the previous 2 issues.





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DEST with new website and training programme for 2014-2015

The Distributed European School of Taxonomy (DEST) has now launched its new website and training programme for 2014-2015. DEST has been established by prominent taxonomists and other international partners during the EU funded project European Distributed Institute of Taxonomy (EDIT: 2006 – 2011). Since March 2011, the Royal Belgian Institute of Natural Sciences committed to sustain the continued management of DEST, organization of courses and related logistics.
 
To see the Modern Taxonomy programme offering intensive theoretical courses in various subjects go to:
 
Or have a look at the Expert-in-training programme enabling trainees to develop and strengthen skills through on-the-job-training:




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VIBRANT: New virtual research communities to create and share data on biodiversity

Data sharing tools developed by an EU project are helping scientists worldwide understand more about the planet’s millions of species. A new article published on CORDIS and DAE looks into the benefits of the FP7 funded project VIBRANT.

One of the biggest challenges facing natural history experts is how to classify and share the mass of data constantly being collected on the Earth’s millions of species.

The three-year VIBRANT project developed a network of online scientific communities collecting data on biodiversity and equipped them with the tools for sharing and publishing their data. Through these activities the project contributed to reducing the fragmentation of efforts aiming to develop biodiversity informatics systems and software.
Based on Scratchpads, an open-source and free to use online platform, VIBRANT has helped create hundreds of new online communities.

The communities are linked together online and feed their data into the most important international biodiversity databases. VIBRANT helps users prepare papers for publication, build bibliographic databases and create reference collections of images and observations. A tool for rapid geospatial analysis of species distributions, a citizen-science marine monitoring platform as well as a biodiversity data analysis framework are also part of the ecosystem of services developed by VIBRANT.

ANTS TO BATS, LOBSTERS TO WHALES

VIBRANT has grown the number of user communities from around 100 under EDIT, an earlier EU project, to over 580 today. Some 6 500 active users are investigating an enormous range of species, at global scale. One site alone on stick insects (phasmids) has over 1 000 users, revealing the large community of people interested in culturing phasmid species.

‘My taxonomic background is in parasitic lice, of which there are about 5 000 particular species that live on about 5 000 mammals and 10 000 birds. Fighting to study that group, I found it enormously difficult to manage all this information,’ explained VIBRANT coordinator Dr Vince Smith, of London’s Natural History Museum.
Using the Scratchpads template, professional and amateur scientists, wherever they are based in the world, create their own subject-specific websites hosted at the museum.

They share their data by publishing it online, while retaining ownership over it and respecting the terms and conditions of the network set up by VIBRANT.
Scratchpads also provides ready access to a range of analytical tools, identification keys and databases that have been developed or enhanced throughout the project.
VIBRANT has also set up a novel, community peer-reviewed, open-access journal, the Biodiversity Data Journal (BDJ). Scratchpads users can input their research into a template which then makes it possible for them to produce a specific paper, publishing it internationally, online, in the BDJ and crediting them for the research. This is made possible via the development of the Pensoft Writing Tool (PWT), which is a leading example of the next generation of scholarly publishing. The PWT is acting as an integrated authoring, peer-review publishing and online collaborative platform which links the Scratchpads to the BDJ.

BIG DATA IN THE INTERNATIONAL CONSERVATION EFFORT

VIBRANT helps all researchers to easily share and link their data with major biodiversity repositories. For example, the Scratchpads collaborate with GBIF (the Global Biodiversity Information Facility), PESI (the EU’s Pan-European Species directories Infrastructure), the Biodiversity Heritage Library and the online collaborative Encyclopedia of Life, which is aiming to document all the planet’s 1.9 million known living species.

Dr Thomas Couvreur in Cameroon is maintaining a Scratchpads community on African palms and the tropical plant family Annonaceae. ‘They provide a professional platform for collaboration between my colleagues around the world, allowing us to share resources such as photos of species, datasets, bibliography and general information,’ he commented. Another coordinator, Eli Sarnat, in California, USA, has one on ants: ‘The platform has solved a big challenge for me: what biodiversity data I should be recording and how I should be recording it.’

The VIBRANT project ran from December 2010 to November 2013. It involved 17 partners from 9 countries, led by the Natural History Museum, London, and received FP7 funding of 4.75 million euros.




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New UN- report released on mobilizing data revolution for a sustainable development: "A world that counts"

A new report "A world that counts - Mobilising the Data Revolution for Sustainable Development" was recently published. The document points out the need for globally available and freely accessible data to monitor progress of Sustainable Development Goals (SDGs), to hold governments accountable and foster sustainable development. This issue needs to be solved in a timely manner, as the gaps between developed and developing countries, between information-rich and information-poor people are increasing. Furthermore, better integrated, timely and validated information can lead to better decision-making and real-time feedback to the citizens. However, still some challenges remain, and the report points out recommendations to overcome existing limitations (countries have poor data, data arrives too late, many issues are barely covered), e.g. through a global "Network of Data Innovation Networks" that connects both organizations and experts. 

The report was written by UN-IAEG, which is the United Nations Secretary-General’s Independent Expert Advisory Group on a Data Revolution for Sustainable Development and is available online here: http://www.undatarevolution.org/wp-content/uploads/2014/11/A-World-That-Counts.pdf





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Key Biodiversity Areas (KBA) consultation: opportunity to contribute to a new IUCN standard

IUCN invites you to review the "Consultation Document on an IUCN Standard for the Identification of Key Biodiversity Areas", and to provide comments through the comment form. This document will form the basis of the IUCN KBA Standard that is submitted to IUCN Council for adoption

The consultation will run from the 7th of October to the 30th of November 2014. Comments received before the 31st of October 2014 will be, as much as possible, presented with the first results of this project during the IUCN World Parks Congress taking place in Sydney, Australia, 12-19 November 2014.

Contributors are not required to comment on the entire Consultation Document – any input will welcomed. 

More information available here.





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Northern lights and solar eclipse celebrate new data standards for biodiversity observation

EU BON and CETAF informatics groups had an astronomically successful meeting at Digitarium in Joensuu, Finland, 17-20 March 2015. The event coincided with solar eclipse and show of the decade for northern lights.

Major progress in data standards for information exchange took place during the week when the Biodiversity Information Standards TDWG organisation announced ratification of five new terms for quantitative biodiversity data, which had been proposed by the EU BON project one year earlier. The new terms include, in particular, organismQuantity and sampleSizeValue. This allows for exchange of ecological data in much wider scale than what has been possible until now. The participants of the meeting applauded for this occasion.

Northern lights over Joensuu Science Park 2015-03-18. Photo: Riitta Tegelberg

The meeting included a training workshop on new data sharing tools, and working sessions for designing the EU BON portal, which will allow using biodiversity observation data in research.

The 40 attendees came from 18 different countries.

Participants at the meeting.

During the meeting the attendees also were given presentations and demonstrations of Digitarium's equipment and methods for high-performance digitisation.

 





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GEO BON with a new website

GEO BON announces the launch of their newly designed webpage located at the same address: www.geobon.org

The site’s home page welcomes visitors with a clean uncluttered design with featured content focused on GEO BON's to improve the acquisition, coordination and delivery of biodiversity information and services to users, particularly decision-makers,  achieved through easier navigation to content, applications and products, but also for the site to serve as a data portal in future.

Go and explore if you haven't done so: www.geobon.org

 





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New associated partner: GFBio - German Federation for Biological Data

EU BON is happy to announce a new addition to our growing family of associated partners. In April 2015, the project has signed a Memorandum of Understanding with the German Federation for Biological Data (GFBio).

GFBio is a project that brings together national key players providing environmentally related biological data and services to develop the ‘German Federation for Biological Data' . The overall goal is to provide a sustainable, service oriented, national data infrastructure facilitating data sharing and stimulating data intensive science in the fields of biological and environmental research. 

The federation will build on proven data archiving infrastructures and workflows such as those of PANGAEA for environmental data and the resources of Germany's major natural history collection data repositories. The new infrastructure will improve and integrate these existing components within a common technological and organizational framework.





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New life for old data: Integrating and visualizing primary biodiversity data from prospective and legacy taxonomic literature

XML markup of taxonomic research and specimen data is a valuable tool for structuring the incessantly accumulating biodiversity knowledge. It allows for the opportunity to collectively use the currently fragmented information for more detailed analysis.

A new research paper, published in theBiodiversity Data Journal, demonstrates how XML markup using GoldenGATE can address the challenges presented by unstructured legacy data, like those presented in the widely used PDF format. The paper demonstrates how structured primary biodiversity data can be extracted from such legacy sources and aggregated with and jointly queried with data from other Darwin Core-compatible sources, to present a visualization of these data that can communicate key information contained in biodiversity literature.

Specimen data in taxonomic literature are among the highest quality primary biodiversity data. Innovative cybertaxonomic journals such as the Biodiversity Data Journal are using workflows that preserve the data's structure and semantic specificity and disseminate electronic content to aggregators and other users that makes these data reusable.

Such structure however is lost in traditional taxonomic publishing and currently, access to that resource is cumbersome, especially for non-specialist data consumers.

The question is: how do you manage this vast distributed repository of knowledge about biodiversity to make it easily available reusable for future research?

To answer this challenge this project queried XML structured articles published in Biodiversity Data Journal along with historical taxonomic literature marked up using GoldenGATE, and represents the results as a series of standard charts. XML structured documents are maintained by the Swiss NGO Plazi and are freely available online.

In such form, data associated with specimens becomes much more valuable as it can reveal key information about a particular species, and even about the scientists who investigate them. Charts indicate at a glance, for example, what time of year and elevation range a species is likely to be found at, useful information if you want to search for it in the field.

Our accumulated biodiversity knowledge includes an estimated 2-3 billion specimens in natural history collections and 500 million pages of printed text. These are the data we need to answer questions that are relevant to our world today, like setting conservation priorities and anticipating the effects of climate change on biodiversity and ecosystem functions that affect the lives of people.

"In short, we have half a billion pages worth of biodiversity knowledge and are just learning how to query it. The real power comes when data from many articles are combined, queried, and reused for new purposes. Potential applications span the scientific, policy, and public spheres. When we all have better access to the information that already exists in the global corpus of biodiversity literature, this helps us do a better job of exploring what we don't know and wisely applying what we do." explains the lead author Dr Jeremy Miller, Naturalis Biodiversity Center.

###

This project was supported by pro-iBiosphere and EU BON, two FP-7 (European Union Seventh Framework Programme, 2007-2013) grants (No 312848 and 308454).

Original source:

Miller J, Agosti D, Penev L, Sautter G, Georgiev T, Catapano T, Patterson D, King D, Pereira S, Vos R, Sierra S (2015) Integrating and visualizing primary data from prospective and legacy taxonomic literature. Biodiversity Data Journal 3: e5063. doi: 10.3897/BDJ.3.e5063

 





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Three new Associated Partners join the EU BON family


Our family of Associated Partners has grown with three new members that joined us this month. EU BON has signed MoUs with the GLOBal Infrastructures for Supporting Biodiversity research (GLOBIS-B), the Institute of Geosciences and Earth Resources of the National Research Council of Italy (IGG-CNR) and ECOPOTENTIAL: Improving Future Ecosystem Benefits through Earth Observations, The hand over took place during the 9th GEO European Projects' Workshop in Copenhagen (15 – 16 June 2015).

 

   
Left: EU BON coordinator Christoph Hauser and Anke Hoffmann handing over the MoUs to our partners from IGG-CNR and ECOPOTENIAL  Antonello Provenzale, Carl Beierkuhnlein and Palma Blonda; Right: Handing over the MoU to Daniel Kissling - scientfic coordinator of GLOBIS-B; Credits: Anke Hoffmann
 

The GLOBIS-B project is a new H2020 project aiming to bring together biodiversity scientists with research infrastructure operators and legal interoperability experts to address the research needs and infrastructure services required to calculate Essential Biodiversity Variables (EBV) at a global scale.

ECOPOTENTIAL makes significant progress beyond the state-of-the-art and creates a unified framework for ecosystem studies and management of protected areas (PA). ECOPOTENTIAL focuses on internationally recognized PAs in Europe and beyond in a wide range of biogeographic regions, and it includes UNESCO, Natura2000 and LTER sites and Large Marine Ecosystems. Best use of Earth Observation (EO) and monitoring data is enabled by new EO open-access ecosystem data services (ECOPERNICUS). 

IGG-CNR conducts studies based on mineralogy, petrology, geochemistry, geodynamics and geophysics, aimed at understanding the processes occurring both in the interior and at the surface of the Earth, and providing the fundamental knowledge for the applications (technological use of geomaterials, mitigation of the natural risks and correct management of the Earth resources for a sustainable development).

 





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New Paper: Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets.

A new EU BON derived open access paper looking into Earth Observations (EO) and the Aichi Targets was recently published  in the journal Remote Sensing in Ecology and Conservation.

The paper reviews the ABTs and EBVs against direct and indirect, operational and emerging, EO data products. The review was conducted by consulting expert opinion and categorically rating the Targets based on the adequacy of currently available EO technology to build indicators per target. The potential RS-EBVs were also matched with their respective EO data products.

To summarize this information a monitoring framework is proposed where RS-EBVs are used to harmonize observations prior to the indicator stage. Potential obstacles to implementing this framework and challenges to its adoption by the wider science and policy community are discussed. Finally, upcoming satellite missions which could offer potential for assessing global biodiversity status and trends beyond the 2020 timeframe of the CBD's current Strategic Plan for Biodiversity are discussed.

Original Source: 

O'Connor B. et. al. (2015) Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets. Remote Sensing in Ecology and Conservation. DOI: 10.1002/rse2.4





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New EU BON Policy Brief on Open Data

The fifth EU BON Policy brief focuses on the need for open data in biodiversity monitoring. The Group on Earth Observation’s Biodiversity Observation Network, of which EU BON is a part, has a vision to better monitor and manage the global biosphere for our common good. This creates research challenges that require use of all appropriate data. Yet, access to data is impaired because, traditionally, few data are released, they are often locked up in traditional scientific literature, or because of concerns over intellectual property rights.

Because of this, EU BON endorses the free and open exchange of data and knowledge in accordance with the "Joint Declaration on Open Science for the 21st Century", especially in regard to scientific information produced in Europe as outlined by the European Commission.

Find out more in the Policy Brief below:





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EU BON welcomes a new Associated Partner - MUSE (Museo delle Scienze)

We are happy to announce the latest member of our Associated Partners list - MUSE (Museo delle Scienze)

MUSE, or the Science Museum is an auxiliary body of the Autonomous Province of Trento. Its task is to interpret nature, starting from the mountains, using the eyes, tools, and applications of scientific research, taking advantage of the challenges of the contemporary world, stimulating scientific curiosity and the pleasure of knowledge, giving value to science, innovation, and sustainability. 

We look forward to more institutions and projects joining our Associated Partners family.





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MUSE talk: "Biodiversity from space: old theories, new frontiers"

On December 2 EU BON partner Duccio Rocchini, the Edmund Mach Foundation, gave a talk "Biodiversity from space: old theories, new frontiers" at MUSE, who recently joined the list of EU BON associated partners. The talk was aimed at explaining how to protect the Earth's biodiversity through the use of images from space.
 

Introduction from the talk; Credit: Duccio Rocchini
 
Satellite images, space station, drones: does this have to do with biodiversity? Duccio Rocchini, researcher at the Department of Molecular Ecology and Biodiversity of the Edmund Mach Foundation explain how biodiversity can benefit from it. In his research Rocchini tries to understand how to monitor biodiversity and its changes in space and time, through the use of satellite images. Such images may in fact help to identify spots in biodiversity and provide basic data for developing models of distribution of species at risk.




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Article Alert: New TEAM network paper looks at standardized assessment of biodiversity trends in tropical forest protected areas

The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.

A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas.

Abstract: 

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropicalforests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse.
 
Original Source: 
 
Beaudrot L, Ahumada JA, O'Brien T, Alvarez-Loayza P, Boekee K, Campos-Arceiz A, et al. (2016) Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight. PLoS Biol 14(1): e1002357. doi:10.1371/journal.pbio.1002357
 
You can also read more in the paper's commentary.




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Job Offer: Two new positions at UNEP-WCMC

WCMC is a UK charity, based in Cambridge, which supports the United Nations Environment Programme. We work in collaboration with UNEP, under the banner of UNEP-WCMC. Our mission is to evaluate and highlight the many values of biodiversity and put authoritative biodiversity knowledge at the centre of decision-making. Since our establishment in the 1970s, the Centre has been at the forefront of the compilation, management, analysis and dissemination of global biodiversity information, and has an outstanding record of achievement.
 
Currently there are two new positions open at UNEP-WCMC: 




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New EU BON article looks into incorporating spatial autocorrelation in rarefaction methods

A new EU BON acknowledged article looks at the recently introduced in scientific literature methods for constructing Spatially Explicit Rarefaction (SER) and their implication for ecologists and conservation biologist. The research was published in the journal Ecological Indicators.

Abstract: 

Recently, methods for constructing Spatially Explicit Rarefaction (SER) curves have been introduced in the scientific literature to describe the relation between the recorded species richness and sampling effort and taking into account for the spatial autocorrelation in the data. Despite these methodological advances, the use of SERs has not become routine and ecologists continue to use rarefaction methods that are not spatially explicit. Using two study cases from Italian vegetation surveys, we demonstrate that classic rarefaction methods that do not account for spatial structure can produce inaccurate results. Furthermore, our goal in this paper is to demonstrate how SERs can overcome the problem of spatial autocorrelation in the analysis of plant or animal communities. Our analyses demonstrate that using a spatially-explicit method for constructing rarefaction curves can substantially alter estimates of relative species richness. For both analyzed data sets, we found that the rank ordering of standardized species richness estimates was reversed between the two methods. We strongly advise the use of Spatially Explicit Rarefaction methods when analyzing biodiversity: the inclusion of spatial autocorrelation into rarefaction analyses can substantially alter conclusions and change the way we might prioritize or manage nature reserves.

Original Source: 

Bacaro, G., Altobelli, A., Camelletti, M., Ciccarelli, D., Martellos, S., Palmer, M.W., Ricotta, C., Rocchini, D., Scheiner, S.M., Tordoni, E., Chiarucci, A. (2016). Incorporating spatial autocorrelation in rarefaction methods: implications for ecologists and conservation biologists. Ecological Indicators, 69: 233-238. [5years-IF: 3.494] doi: http://dx.doi.org/10.1016/j.ecolind.2016.04.026





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ConnectinGEO: a new EU BON associated partner

The 10th GEO European Projects Workshop that took place from 31 May - 2 June, in Berlin, was a success for EU BON in many ways. Among the significant achievements was signing a Memorandum of Understanding with the ConnectinGEO project to add this important initiative to our ever-growing list of associated partners.

The MoU handed over by EU BON coordinator Dr. Christoph Häuser to Dr. Joan Masó, coordinator of ConnectinGEO.


Handing over the MoU between Christoph Häuser, EU BON (left) and Joan Masó, ConnectinGEO (right); Credit: EU BON

ConnectinGEO is under the umbrella of GEOSS and the EU funding with the aim of linking existing coordinated Earth observation networks with the science and technology (S&T) communities, the industry sector and the GEOSS and Copernicus stakeholders. The goal is to facilitate a broader and more accessible knowledge base to support the needs of the GEO Societal Benefit Areas (SBAs) and their users. A broad range of subjects from climate, natural resources and raw materials, to the emerging UN Sustainable Development Goals (SDGs) will be addressed.





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A new Biodiversity Portal for Europe to enhance access to monitoring data

Set to compile the largest biodiversity data collection for Europe to date, the EU-funded FP7 project Building the European Biodiversity Observation Network (EU BON) has now launched the beta-version of its European Biodiversity Portal.

Despite being a beta version, this release already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations.

Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources.

Started in 2012, the five-year project EU BON has been working towards building this new European Biodiversity Portal where scattered and various information and tools are collected, highlighted and widely shared for future research.

The service will provide all interested parties with a professional database platform with a large amount of implications. For example, coordinators can receive information about related monitoring programs in different countries. Initiatives could integrate their data and compare the trends and status across different countries and regions.

"The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes.", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON.

We invite everyone to test the new portal and send us their feedback and suggestions for improvements via our Feedback Form.

 





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New Book: Camera Trapping for Wildlife Research

Camera trapping is a powerful and now widely used tool in scientific research on wildlife ecology and management. It provides a unique opportunity for collecting knowledge, investigating the presence of animals, or recording and studying behaviour. Its visual nature makes it easy to successfully convey findings to a wide audience.

The new book provides a much-needed guide to the sound use of camera trapping for the most common ecological applications to wildlife research. Each phase involved in the use of camera trapping is covered:

- Selecting the right camera type 
- Set-up and field deployment of your camera trap 
- Defining the sampling design: presence/absence, species inventory, abundance; occupancy at species level; capture-mark-recapture for density estimation; behavioural studies; community-level analysis 
- Data storage, management and analysis for your research topic, with illustrative examples for using R and Excel 
- Using camera trapping for monitoring, conservation and public engagement.

Each chapter in this edited volume is essential reading for students, scientists, ecologists, educators and professionals involved in wildlife research or management.

Find out more in the promotional video.

About the authors

Francesco Rovero is an ecologist and conservation scientist with a PhD in animal ecology. He is currently the Curator for Tropical Biodiversity at MUSE Science Museum in Trento, Italy. 

Fridolin Zimmermann is a carnivore conservation scientist with a PhD on Eurasian lynx conservation and ecology. He is currently coordinator of the large carnivore monitoring in Switzerland at Carnivore Ecology and Wildlife Management (KORA).

Collectively they have nearly 30 years of professional experience in the use of camera trapping for wildlife research, and have worked on a range of species, habitat and study types.





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New Book: Aquatic Biodiversity Conservation and Ecosystem Services

The newly published by Springer "Aquatic Biodiversity Conservation and Ecosystem Services" volume examines the topic of local biodiversity conservation in the Asia-Pacific region, one of the most rapidly changing areas in the world. With a focus on aquatic systems, this book offers insight on the state of local biodiversity, challenges in management and conservation of biodiversity, and newly developed methods for monitoring biodiversity. In addition, because the service provided by an ecosystem for humans is interlinked with conservation, the final part is dedicated to evaluating the socioeconomic aspect of ecosystem services, with special reference to local biodiversity. In effect, all contributions provide information that is invaluable for effective conservation and sustainable use of biodiversity.

This work will interest all stakeholders in biodiversity conservation, including policy makers, NPOs, NGOs, environment-related industries, and biodiversity researchers, not only in the Asia-Pacific region, but also across the entire globe.

More information here.

 





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New associated partner: EU BON and EKLIPSE, working together to better link science and policy

The EU project EKLIPSE has joined our family of associated partners. The MoU was signed by Dr. Carsten Neßhöver, UFZ, on behalf of EKLIPSE project Coordinator Dr. Allan Watt (NERC-Centre for Ecology and Hydrology, Edinburgh, UK) and Dr. Anke Hoffmann, on behalf of EU BON Coordinator Dr. Christoph Häuser, during the 2016 GEO BON Open Science Conference & All Hands Meeting in Leipzig, Germany.

 


Dr. Carsten Neßhöver and Dr. Anke Hoffmann at the handing of the MoU; Credit: EKLIPSE

EKLIPSE is a EU project that will set up a sustainable and innovative way of knowing, networking and learning about biodiversity and ecosystem services. EKLIPSE is an unusual project in several ways, particularly:





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New EU ABS Regulation Workshops - Stockholm, Warsaw, Leiden, Budapest

The EU is a party to the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilisation. The EU ABS Regulation1, which transposes into the EU legal order the compliance pillar of the Protocol, became applicable as of 12 October 2014. The principal obligations of the Regulation – i.e. Article 4 on due diligence, Article 7 on monitoring user compliance and Article 9 on checks on user compliance – will become applicable as of 12 October 2015.

In this context it is important that those who utilise genetic resources (i.e. conduct research and development on the genetic and/or biological composition of genetic resources, including through the application of biotechnology) are aware of the obligations arising from the Regulation, and that they can take the necessary measures to ensure their activities are compliant.

What's in it for you?

The EU ABS Regulation workshop aims at providing the participants with knowledge about their obligations under the EU ABS Regulation and what they practically imply for their everyday work. In the first part of the workshop, the new legal framework will be explained, providing insight into the main provisions of the EU ABS Regulation. In the second part of the workshop, participants will have a chance to put the knowledge gained into practice through interactive case studies, based on real-life examples and realistic scenarios.

The workshop should allow participants to better understand their obligations under the EU law, and to establish which steps they need to follow and which practical measures they should take when dealing with genetic resources originating from Parties to the Nagoya Protocol.

Planning and location of the workshops: 

Feel free to apply for registration to one of the following workshops:

  • 18 October: Stockholm
  • 17 November: Warsaw
  • 21 November: Leiden
  • Date to be determined: Budapest

The workshop is targeted at senior academics and experienced researchers conducting research and development on genetic resources who have an interest in gaining an essential understanding of the new legal framework in the EU, in view of the ABS Regulation becoming fully operational later this year.

Registration page: http://www.euconf.eu/abs/en/registration/index.html





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New RIO contribution: Summary report and strategy recommendations for EU citizen science gateway for biodiversity data

A new report has been added to the dedicated EU BON Outputs Collection in the innovative RIO journal. The paper reviews biodiversity related citizen science in Europe, specifically the data mobilization aspect and gives an overview of citizen science related activities in the project EU BON.

In addition, recommendations for a Pan-European citizen science gateway and data mobilization efforts will be given, with the aim of filling in existing biodiversity data gaps. Also the EU BON citizen science gateway is described, which is a part of the European Biodiversity Portal (http://biodiversity.eubon.eu) with citizen science related products. 

Citizen science is a vital element for EU BON with regards to biodiversity information sources that provide data for research and policy-making. CS data are used by many research institutes, public organisations and local data portals. CS data offer volumes of field data, which would otherwise not be possible to collect with the limited resources of research institutes and agencies. Thus one of the main targets for EU BON is to make CS data available through various efforts, for example through networking and by using new technologies for data mobilisation. Overall, one of the main goals of a common EU citizen science Gateway is to integrate CS data for European biodiversity research. EU BON also seeks to develop a strategy for achieving this goal and encourages educational aspects of citizen science through networking and the development of tools.

Original Source:

Runnel V, Wetzel F, Groom Q, Koch W, Pe’er I, Valland N, Panteri E, Kõljalg U (2016) Summary report and strategy recommendations for EU citizen science gateway for biodiversity data. Research Ideas and Outcomes 2: e11563. https://doi.org/10.3897/rio.2.e11563





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New EU BON Forum Paper discusses legitimacy of reusing images from scientific papers addressed

The discipline of taxonomy is highly reliant on previously published photographs, drawings and other images as biodiversity data. Inspired by the uncertainty among taxonomists, a team, representing both taxonomists and experts in rights and copyright law, has traced the role and relevance of copyright when it comes to images with scientific value. Their discussion and conclusions are published in the latest paper added in the EU BON Collection in the open science journal Research Ideas and Outcomes (RIO).

Taxonomic papers, by definition, cite a large number of previous publications, for instance, when comparing a new species to closely related ones that have already been described. Often it is necessary to use images to demonstrate characteristic traits and morphological differences or similarities. In this role, the images are best seen as biodiversity data rather than artwork. According to the authors, this puts them outside the scope, purposes and principles of Copyright. Moreover, such images are most useful when they are presented in a standardized fashion, and lack the artistic creativity that would otherwise make them 'copyrightable works'.

"It follows that most images found in taxonomic literature can be re-used for research or many other purposes without seeking permission, regardless of any copyright declaration," says Prof. David J. Patterson, affiliated with both Plazi and the University of Sydney.

Nonetheless, the authors point out that, "in observance of ethical and scholarly standards, re-users are expected to cite the author and original source of any image that they use." Such practice is "demanded by the conventions of scholarship, not by legal obligation," they add.

However, the authors underline that there are actual copyrightable visuals, which might also make their way to a scientific paper. These include wildlife photographs, drawings and artwork produced in a distinctive individual form and intended for other than comparative purposes, as well as collections of images, qualifiable as databases in the sense of the European Protection of Databases directive.

In their paper, the scientists also provide an updated version of the Blue List, originally compiled in 2014 and comprising the copyright exemptions applicable to taxonomic works. In their Extended Blue List, the authors expand the list to include five extra items relating specifically to images.

"Egloff, Agosti, et al. make the compelling argument that taxonomic images, as highly standardized 'references for identification of known biodiversity,' by necessity, lack sufficient creativity to qualify for copyright. Their contention that 'parameters of lighting, optical and specimen orientation' in biological imaging must be consistent for comparative purposes underscores the relevance of the merger doctrine for photographic works created specifically as scientific data," comments on the publication Ms. Gail Clement, Head of Research Services at the Caltech Library.

"In these cases, the idea and expression are the same and the creator exercises no discretion in complying with an established convention. This paper is an important contribution to the literature on property interests in scientific research data - an essential framing question for legal interoperability of research data," she adds.

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Original source:

Egloff W, Agosti D, Kishor P, Patterson D, Miller J (2017) Copyright and the Use of Images as Biodiversity Data. Research Ideas and Outcomes 3: e12502. https://doi.org/10.3897/rio.3.e12502





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EU BON featured in CORDIS News: New tools to increase the accuracy of biodiversity monitoring

A recent story, featured on CORDIS News, focuses on EU BON and its achievements. Based on a recent project's publication in ‘Nature – Scientific Reports’ and information from the project, the new item discusses important project outcomes, including the European Biodiversity Portal, and their contribution to drawing a more accurate picture of current biodiversity to aid efforts for sustainable governance of natural resources.

Here is a snippet from the news feature on CORDIS: 

A recent article published in the journal ‘Scientific Reports’ states, ‘Monitoring schemes provide an important source of information on biodiversity change, guiding further research, conservation assessment and planning.’ The article cites The European Biodiversity Portal, designed and implemented by the EU-funded EU BON project that offers researchers, policy-makers, and others interested in biodiversity, easy access to insights on trends and modelling techniques.

The project worked on the establishment and adoption of new data standards, the development of tools to enable collaborative research and the encouragement of citizen-scientists. As a result, EU BON, by building the European Biodiversity Observation Network, has created advanced techniques for data analysis along with new approaches for modelling and strategies for future biodiversity monitoring.

Read the full publication here.





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New EU BON research reviews the most relevant sources for European biodiversity observation data to identifying important barriers and fill gaps

Recently published in Biological Conservation, the new EU BON supported paper is titled "Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe".
 
Abstract:
 
Large quantities of biodiversity data are required to assess the current status of species, to identify drivers of population and distributional change, and to predict changes to biodiversity under future scenarios. Nevertheless, currently-available data are often not well-suited to these purposes. To highlight existing gaps, we assess the availability of species observation data in Europe, their geographic and temporal range, and their quality. We do so by reviewing the most relevant sources for European biodiversity observation data, and identifying important barriers to filling gaps. We suggest strategies, tools and frameworks to continue to fill these gaps, in addition to producing data suitable for generating Essential Biodiversity Variables (EBVs). Our review of data sources shows that only around a third of data-providers provide unrestricted data access. Particularly large geographic gaps exist in Eastern European countries and many datasets are not suitable for generating EBVs due to the absence of long-term data. We highlight examples built on recent experiences from large data integrators, publishers and networks that help to efficiently improve data availability, adopt open science principles and close existing data gaps. Future strategies must urgently consider the needs of relevant data stakeholders, particularly science- and policy-related needs, and provide incentives for data-providers. Hence, sustainable, longterm infrastructures and a European biodiversity network are needed to provide such efficient workflows, incentives for data-provision and tools.
 
 

 





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Stemming from EU BON, new research calls for action: Overcoming the barriers to the use of conservation science in policy

Just accepted, a new paper in Conservation Letters looks at the barriers and solutions to the use of conservation science in policy. The main data used in the paper are from a global multi-lingual survey filled in by 758 research scientists, practitioners, or people in policy positions, executed as part of the EU BON project.

"The most interesting result from our study is that there is agreement (perhaps surprisingly!) between research scientists, practitioners, and people in policy positions about the main barriers preventing the use of conservation science in policy. Although barriers such as lack of policy relevant science, lack of understanding of science on the part of policy-makers, and limited awareness of policy processes from researchers, featured in the top-ten barriers included in the online survey, they were not the most highly ranked," shares lead author David C. Rose in a dedicated post on his blog Academic Optimism.

Read more in the blog post: https://academicoptimism.wordpress.com/2018/04/22/overcoming-the-barriers-to-the-use-of-conservation-science-in-policy-time-for-action/

The original research is available at: https://doi.org/10.1111/conl.12564

Abstract: 

Conservation policy decisions can suffer from a lack of evidence, hindering effective decision‐making. In nature conservation, studies investigating why policy is often not evidence‐informed have tended to focus on Western democracies, with relatively small samples. To understand global variation and challenges better, we established a global survey aimed at identifying top barriers and solutions to the use of conservation science in policy. This obtained the views of 758 people in policy, practice, and research positions from 68 countries across six languages. Here we show that, contrary to popular belief, there is agreement about how to incorporate conservation science into policy, and there is thus room for optimism. Barriers related to the low priority of conservation were considered to be important, while mainstreaming conservation was proposed as a key solution. Therefore, priorities should include the elaboration of public policy pathways with education initiatives that promote the importance of long‐term conservation‐compatible policies.





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News about PERPLEXING PLOTS

Edgar Award© Mystery Writers of America. DB here: Some good news for Perplexing Plots. It’s gotten positive reviews in various places; they’re sampled on its Amazon page. Most recently, Geoffrey O’Brien has written a very generous review for the New York Review of Books (February 8, 2024). He has, needless to say, kind words for […]

















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Unexpectedly, news outlets wind up having a relatively traditional election night experience

“This looks a lot more like 2016 to me than 2020,” NBC’s Chuck Todd said, a reference to Trump’s victory that year over Democrat Hillary Clinton.

The post Unexpectedly, news outlets wind up having a relatively traditional election night experience appeared first on Boston.com.