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Bayesian linear regression for multivariate responses under group sparsity

Bo Ning, Seonghyun Jeong, Subhashis Ghosal.

Source: Bernoulli, Volume 26, Number 3, 2353--2382.

Abstract:
We study frequentist properties of a Bayesian high-dimensional multivariate linear regression model with correlated responses. The predictors are separated into many groups and the group structure is pre-determined. Two features of the model are unique: (i) group sparsity is imposed on the predictors; (ii) the covariance matrix is unknown and its dimensions can also be high. We choose a product of independent spike-and-slab priors on the regression coefficients and a new prior on the covariance matrix based on its eigendecomposition. Each spike-and-slab prior is a mixture of a point mass at zero and a multivariate density involving the $ell_{2,1}$-norm. We first obtain the posterior contraction rate, the bounds on the effective dimension of the model with high posterior probabilities. We then show that the multivariate regression coefficients can be recovered under certain compatibility conditions. Finally, we quantify the uncertainty for the regression coefficients with frequentist validity through a Bernstein–von Mises type theorem. The result leads to selection consistency for the Bayesian method. We derive the posterior contraction rate using the general theory by constructing a suitable test from the first principle using moment bounds for certain likelihood ratios. This leads to posterior concentration around the truth with respect to the average Rényi divergence of order $1/2$. This technique of obtaining the required tests for posterior contraction rate could be useful in many other problems.




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Dynamic linear discriminant analysis in high dimensional space

Binyan Jiang, Ziqi Chen, Chenlei Leng.

Source: Bernoulli, Volume 26, Number 2, 1234--1268.

Abstract:
High-dimensional data that evolve dynamically feature predominantly in the modern data era. As a partial response to this, recent years have seen increasing emphasis to address the dimensionality challenge. However, the non-static nature of these datasets is largely ignored. This paper addresses both challenges by proposing a novel yet simple dynamic linear programming discriminant (DLPD) rule for binary classification. Different from the usual static linear discriminant analysis, the new method is able to capture the changing distributions of the underlying populations by modeling their means and covariances as smooth functions of covariates of interest. Under an approximate sparse condition, we show that the conditional misclassification rate of the DLPD rule converges to the Bayes risk in probability uniformly over the range of the variables used for modeling the dynamics, when the dimensionality is allowed to grow exponentially with the sample size. The minimax lower bound of the estimation of the Bayes risk is also established, implying that the misclassification rate of our proposed rule is minimax-rate optimal. The promising performance of the DLPD rule is illustrated via extensive simulation studies and the analysis of a breast cancer dataset.




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Estimation of the linear fractional stable motion

Stepan Mazur, Dmitry Otryakhin, Mark Podolskij.

Source: Bernoulli, Volume 26, Number 1, 226--252.

Abstract:
In this paper, we investigate the parametric inference for the linear fractional stable motion in high and low frequency setting. The symmetric linear fractional stable motion is a three-parameter family, which constitutes a natural non-Gaussian analogue of the scaled fractional Brownian motion. It is fully characterised by the scaling parameter $sigma>0$, the self-similarity parameter $Hin(0,1)$ and the stability index $alphain(0,2)$ of the driving stable motion. The parametric estimation of the model is inspired by the limit theory for stationary increments Lévy moving average processes that has been recently studied in ( Ann. Probab. 45 (2017) 4477–4528). More specifically, we combine (negative) power variation statistics and empirical characteristic functions to obtain consistent estimates of $(sigma,alpha,H)$. We present the law of large numbers and some fully feasible weak limit theorems.




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The Yangya Hicks : tales from the Hicks family of Yangya near Gladstone, South Australia, written from the 12th of May 1998 / by Joyce Coralie Hale (nee Hicks) (28.12.1923-17.12.2003).

Hicks (Family)




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GEDmatch : tools for DNA & genealogy research / by Kerry Farmer.

Genetic genealogy -- Handbooks, manuals, etc.




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Genealogy and family trees

Rungie (Family)




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Nearly one-third of Americans believe a coronavirus vaccine exists and is being withheld, survey finds

The Democracy Fund + UCLA Nationscape Project found some misinformation about the coronavirus is more widespread that you might think.





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A Loss-Based Prior for Variable Selection in Linear Regression Methods

Cristiano Villa, Jeong Eun Lee.

Source: Bayesian Analysis, Volume 15, Number 2, 533--558.

Abstract:
In this work we propose a novel model prior for variable selection in linear regression. The idea is to determine the prior mass by considering the worth of each of the regression models, given the number of possible covariates under consideration. The worth of a model consists of the information loss and the loss due to model complexity. While the information loss is determined objectively, the loss expression due to model complexity is flexible and, the penalty on model size can be even customized to include some prior knowledge. Some versions of the loss-based prior are proposed and compared empirically. Through simulation studies and real data analyses, we compare the proposed prior to the Scott and Berger prior, for noninformative scenarios, and with the Beta-Binomial prior, for informative scenarios.




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A New Bayesian Approach to Robustness Against Outliers in Linear Regression

Philippe Gagnon, Alain Desgagné, Mylène Bédard.

Source: Bayesian Analysis, Volume 15, Number 2, 389--414.

Abstract:
Linear regression is ubiquitous in statistical analysis. It is well understood that conflicting sources of information may contaminate the inference when the classical normality of errors is assumed. The contamination caused by the light normal tails follows from an undesirable effect: the posterior concentrates in an area in between the different sources with a large enough scaling to incorporate them all. The theory of conflict resolution in Bayesian statistics (O’Hagan and Pericchi (2012)) recommends to address this problem by limiting the impact of outliers to obtain conclusions consistent with the bulk of the data. In this paper, we propose a model with super heavy-tailed errors to achieve this. We prove that it is wholly robust, meaning that the impact of outliers gradually vanishes as they move further and further away from the general trend. The super heavy-tailed density is similar to the normal outside of the tails, which gives rise to an efficient estimation procedure. In addition, estimates are easily computed. This is highlighted via a detailed user guide, where all steps are explained through a simulated case study. The performance is shown using simulation. All required code is given.




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Dynamic Quantile Linear Models: A Bayesian Approach

Kelly C. M. Gonçalves, Hélio S. Migon, Leonardo S. Bastos.

Source: Bayesian Analysis, Volume 15, Number 2, 335--362.

Abstract:
The paper introduces a new class of models, named dynamic quantile linear models, which combines dynamic linear models with distribution-free quantile regression producing a robust statistical method. Bayesian estimation for the dynamic quantile linear model is performed using an efficient Markov chain Monte Carlo algorithm. The paper also proposes a fast sequential procedure suited for high-dimensional predictive modeling with massive data, where the generating process is changing over time. The proposed model is evaluated using synthetic and well-known time series data. The model is also applied to predict annual incidence of tuberculosis in the state of Rio de Janeiro and compared with global targets set by the World Health Organization.




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Adaptive Bayesian Nonparametric Regression Using a Kernel Mixture of Polynomials with Application to Partial Linear Models

Fangzheng Xie, Yanxun Xu.

Source: Bayesian Analysis, Volume 15, Number 1, 159--186.

Abstract:
We propose a kernel mixture of polynomials prior for Bayesian nonparametric regression. The regression function is modeled by local averages of polynomials with kernel mixture weights. We obtain the minimax-optimal contraction rate of the full posterior distribution up to a logarithmic factor by estimating metric entropies of certain function classes. Under the assumption that the degree of the polynomials is larger than the unknown smoothness level of the true function, the posterior contraction behavior can adapt to this smoothness level provided an upper bound is known. We also provide a frequentist sieve maximum likelihood estimator with a near-optimal convergence rate. We further investigate the application of the kernel mixture of polynomials to partial linear models and obtain both the near-optimal rate of contraction for the nonparametric component and the Bernstein-von Mises limit (i.e., asymptotic normality) of the parametric component. The proposed method is illustrated with numerical examples and shows superior performance in terms of computational efficiency, accuracy, and uncertainty quantification compared to the local polynomial regression, DiceKriging, and the robust Gaussian stochastic process.




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Probability Based Independence Sampler for Bayesian Quantitative Learning in Graphical Log-Linear Marginal Models

Ioannis Ntzoufras, Claudia Tarantola, Monia Lupparelli.

Source: Bayesian Analysis, Volume 14, Number 3, 797--823.

Abstract:
We introduce a novel Bayesian approach for quantitative learning for graphical log-linear marginal models. These models belong to curved exponential families that are difficult to handle from a Bayesian perspective. The likelihood cannot be analytically expressed as a function of the marginal log-linear interactions, but only in terms of cell counts or probabilities. Posterior distributions cannot be directly obtained, and Markov Chain Monte Carlo (MCMC) methods are needed. Finally, a well-defined model requires parameter values that lead to compatible marginal probabilities. Hence, any MCMC should account for this important restriction. We construct a fully automatic and efficient MCMC strategy for quantitative learning for such models that handles these problems. While the prior is expressed in terms of the marginal log-linear interactions, we build an MCMC algorithm that employs a proposal on the probability parameter space. The corresponding proposal on the marginal log-linear interactions is obtained via parameter transformation. We exploit a conditional conjugate setup to build an efficient proposal on probability parameters. The proposed methodology is illustrated by a simulation study and a real dataset.




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Comment: “Models as Approximations I: Consequences Illustrated with Linear Regression” by A. Buja, R. Berk, L. Brown, E. George, E. Pitkin, L. Zhan and K. Zhang

Roderick J. Little.

Source: Statistical Science, Volume 34, Number 4, 580--583.




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Models as Approximations I: Consequences Illustrated with Linear Regression

Andreas Buja, Lawrence Brown, Richard Berk, Edward George, Emil Pitkin, Mikhail Traskin, Kai Zhang, Linda Zhao.

Source: Statistical Science, Volume 34, Number 4, 523--544.

Abstract:
In the early 1980s, Halbert White inaugurated a “model-robust” form of statistical inference based on the “sandwich estimator” of standard error. This estimator is known to be “heteroskedasticity-consistent,” but it is less well known to be “nonlinearity-consistent” as well. Nonlinearity, however, raises fundamental issues because in its presence regressors are not ancillary, hence cannot be treated as fixed. The consequences are deep: (1) population slopes need to be reinterpreted as statistical functionals obtained from OLS fits to largely arbitrary joint ${x extrm{-}y}$ distributions; (2) the meaning of slope parameters needs to be rethought; (3) the regressor distribution affects the slope parameters; (4) randomness of the regressors becomes a source of sampling variability in slope estimates of order $1/sqrt{N}$; (5) inference needs to be based on model-robust standard errors, including sandwich estimators or the ${x extrm{-}y}$ bootstrap. In theory, model-robust and model-trusting standard errors can deviate by arbitrary magnitudes either way. In practice, significant deviations between them can be detected with a diagnostic test.




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Jennifer Lopez Is Wearing the Hell Out of These $60 Sneakers—and You Can Buy Them at Zappos

The chic sneaks are part of Zappos' massive Cyber Monday sale.




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Katie Holmes’s Affordable Sneakers Are the Star of Her Latest Outfit

Meghan Markle is also a fan of the comfy shoes.




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The Comfy Sneakers That Kate Middleton, Kelly Ripa, and More Celebs Love Are on Sale at Amazon

Keep your feet comfy and your wallet fat.




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Reese Witherspoon and I Wear the Same Comfy Hoka One One Sneakers to Run Errands 

Once you try them, you’ll never want to wear anything else




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Nike Launches Zoom Pulse Sneakers for Medical Workers Who Are On Their Feet All Day

The new style is available to shop today.




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Linearity and Normalization in Simple Cells of the Macaque Primary Visual Cortex

Matteo Carandini
Nov 1, 1997; 17:8621-8644
Articles




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Cortical Excitatory Neurons and Glia, But Not GABAergic Neurons, Are Produced in the Emx1-Expressing Lineage

Jessica A. Gorski
Aug 1, 2002; 22:6309-6314
BRIEF COMMUNICATION




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Linear Systems Analysis of Functional Magnetic Resonance Imaging in Human V1

Geoffrey M. Boynton
Jul 1, 1996; 16:4207-4221
Articles




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2003-10-31_Juneau_and_Douglas




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WWII Bunker Used by Churchill's 'Secret Army' Unearthed in Scotland

British Auxiliary Units were trained to sabotage the enemy in case of German invasion




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U.K. Storms Unearth Bones From Historic Scottish Cemetery—and Archaeologists Are Worried

The burial site, which contains remains from both the Picts and the Norse, is at risk of disappearing due to coastal erosion




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Newly Unearthed Mesoamerican Ball Court Offers Insights on Game's Origins

"This could be the oldest and longest-lived team ball game in the world," says one archaeologist




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Remnants of 13th-Century Town Walls Unearthed in Wales

Caernarfon, where the discovery was made, was key to Edward I's conquest of the Welsh




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Archaeologists Unearth Remnants of Kitchen Behind Oldest House Still Standing in Maui

The missionary who lived in the house during the mid-1800s delivered vaccinations to locals during a smallpox epidemic




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Archaeologists in Leeds Unearth 600 Lead-Spiked, 19th-Century Beer Bottles

The liquid inside is 3 percent alcohol by volume—and contains 0.13 milligrams of lead per liter




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Neanderthals Really Liked Seafood

A rare cache of aquatic animal remains suggests that like early humans, Neanderthals were exploiting marine resources




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Four New Species of Prehistoric Flying Reptiles Unearthed in Morocco

These flying reptiles patrolled the African skies some 100 million years ago




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Archaeologists Unearth Remnants of Lost Scottish Wine-Bottle Glass Factory

The 18th-century Edinburgh factory once produced a million bottles a week




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Bronze Age Chieftain's Remains Found Beneath U.K. Skate Park

The Beaker man was buried alongside four cowhide "rugs," an eight-inch copper dagger and a wrist guard made of rare green stone




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Forgotten Tunnel Found Beneath Danish Train Station

Wood used to build the secret passageway came from a tree felled in 1874, according to a new analysis




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Over 1,000 Nunavut residents quarantined so far, government spends nearly $4M

The Nunavut government says there is no set limit on how much money it is prepared to spend on hotels for residents required to isolate before they return home.



  • News/Canada/North

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RCMP say grass fires near Sweetgrass First Nation were intentionally set

RCMP say they were first called about the fires at 10 p.m. CST on May 7.



  • News/Canada/Saskatchewan

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Visita a una iglesia subterránea

Este año en el mes en que se llevó a cabo el mantenimiento anual de Logos Hope en Uruguay, la tripulante Cecilia* de Argentina se unió a un pequeño equipo que sirve en Asia Central. Mientras estuvo allí, pudo asistir a dos iglesias subterráneas que desbordaban de esperanza y fe.




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Designing Floating Buildings With an Eye to the Marine Species Living Underneath

A prototype deployed in San Francisco Bay imagines the underside of a floating building as an upside-down artificial reef




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Study finds nearly 40% drop in stroke evaluations during COVID-19 pandemic

The number of people evaluated for signs of stroke at U.S. hospitals has dropped by nearly 40% during the COVID-19 pandemic, according to a study led by researchers from Washington University School of Medicine in St. Louis who analyzed stroke evaluations at more than 800 hospitals across 49 states and the District of Columbia.




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Korea baseball reportedly nearing deal with ESPN to televise games

Live professional baseball games could be televised in the United States as early next week, with South Korea's Yonhap News Agency reporting Monday that ESPN and the Korea Baseball Organization are nearing an agreement.



  • Sports/Baseball/MLB

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Giant, record-class walleye caught and released near Dryden, Ont.

A man from Vermilion Bay, Ont., caught and released a fish that he says could have challenged a 70-year-old record for walleye last weekend.



  • News/Canada/Thunder Bay

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Haven of hope in Syria - Near East

OM partner finds young men on the street and offers them jobs and a place to study the Bible.




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‘It’s always about the people’ - Near East

Friends Derek and Josiah, who grew up in OM, talk about their most recent adventure: one year producing videos in the Middle East and North Africa.




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Wildfire burning near Kamloops, B.C.

The B.C. Wildfire Service and the Adams Lake Fire Department are responding to a wildfire burning east of Kamloops in B.C.'s southern Interior.



  • News/Canada/British Columbia

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Monetary policy gradualism and the nonlinear effects of monetary shocks

Bank of Italy Working Papers by Luca Metelli, Filippo Natoli and Luca Rossi




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‘You don’t see the plant, but the roots are growing underneath’

Three OM Hungary team members share what they’ve learned while serving as teachers at the International Christian School of Budapest.




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Linear Static FEA Productivity with Simulation Professional

Read to learn about the features and functionality of Simulation Professional that could significantly increase your linear static productivity.

Author information

Brian Zias
Senior Territory Technical Manager at Dassault Systemes SOLIDWORKS

Brian is a 15-year, expert SOLIDWORKS CAD, FEA, and CFD user and community advocate. His interests include engineering, simulation, team leadership, and predictive analytics. Brian holds a BS in Aerospace Engineering and an MBA in Data Science.

The post Linear Static FEA Productivity with Simulation Professional appeared first on The SOLIDWORKS Blog.




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Doulos: a platform for peace in Papua New Guinea

In 1999, national bitterness and divisions were set aside on board Doulos, which facilitated an historic reconciliation after conflict in the Pacific islands.




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Pioneering disability tech firm Neatebox accepted into bank accelerator programme

NEATEBOX, the Scottish technology firm which specialises in improving accessibility for people with disabilities, has been accepted into an accelerator programme run by Royal Bank of Scotland.




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Coronavirus: MSPs highlight 'deep unease' of teachers at qualifications overhaul

MSPs have penned a letter to the head of the Scottish Qualifications Authority (SQA) - highlighting “deep unease” by teachers at plans to overhaul exams amid the lockdown.