Data collection and analysis are at the core of modern research, and often take months or even years during which researchers remain uncredited for their contribution. A new plugin to a workflow previously developed by the Global Biodiversity Information Facility (GBIF) and Pensoft, and tested with datasets shared through GBIF and DataONE, now makes it possible to convert metadata into a manuscript for scholarly publications, with a click of a button.

Pensoft has currently implemented the feature for biodiversity, ecological and environmental data. Such records are either published through GBIF or deposited at DataONE, from where the associated metadata can be converted directly into data paper manuscripts within the ARPHA Writing Tool, where the authors may edit and finalize it in collaboration with co-authors and peers and submit it to the Biodiversity Data Journal (BDJ) with another click. Until now, the GBIF metadata have been exported into an RTF file. The new feature will be also part of future Pensoft projects, including the recently announced Research Ideas & Outcomes (RIO) Journaland the forthcoming Ecology and Sustainability Data Journal.

The concept of the data paper was introduced in the early 2000's by the Ecological Society of America in order to solve issues of handling big data and to make the metadata and the corresponding datasets discoverable and citable. It was then brought to the attention of the biodiversity community in 2011 as a result of a joint GBIF and Pensoft project and later implemented in the routine publishing process in all Pensoft journals.

Since then, Pensoft has been working with GBIF, and subsequently DataONE to automate the process of converting metadata into a human-readable data paper format. The novel workflow means that with only a couple of clicks, publishers of datasets on either GBIF, DataONE or any other portal storing metadata in the same format, may submit a manuscript for peer-review and open access citable publication in BDJ.

The process is simple, yet it brings a lot of benefits. Publishing data does not only mean a citable publication and, thus, credit to the authors and the repository itself, but it also provides the option to improve your work and collect opinion though peer-review. BDJ also shortens the distance between "narrative (text)" and "data" publishing.

"Metadata descriptions (e.g., data about the data) are of primary importance for data dissemination, sharing and re-use, as they give essential information on content, scope, purpose, fitness for use, authorship, usage rights, etc. to any potential user. Authoring detailed metadata in repositories can seem a tedious process, however DataONE users will now benefit from direct export of already created metadata into data paper manuscripts and have even better exposure of their work through discoverability mechanisms and scholarly citations," commented Dr Amber Budden, DataONE Director for Community Engagement and Outreach

"It is great to reap the fruits of a process that started back in 2010. The automated streamlining of biodiversity data between repositories and publisher is an elegant feature that makes publishing a data paper an easy and rewarding process to crown scientists data collection efforts and ensure its use and re-use," added Prof. Lyubomir Penev, Managing Director of Pensoft.

More detailed information on how data authors could use the workflow can be found on the Pensoft blog.

References:

Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics. 12(Suppl 15):S2. DOI: 10.1186/1471-2105-12-S15-S2

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

Substantial amount of documented occurrence records is awaiting publication stored in repositories and data indexing platforms, such as the Global Biodiversity Information Facility (GBIF), Barcode of Life Data Systems (BOLD Systems), or Integrated Digitized Biocollections (iDigBio). In order to streamline the authoring process, save taxonomists time, and provide a workflow for peer-review and quality checks, Pensoft has introduced an innovative feature that makes it possible to easily import occurrence records into a taxonomic manuscript.

Prior to this development, Pensoft's ARPHA Writing Tool (AWT) only used the "upload from Excel" approach for this workflow. Although this method significantly simplified the process of importing materials and is actively used by the authors, it still required one extra transposition step.

Now, we added a new even more user-friendly option. By simply specifying an identifier (ID) in the relevant box, the new import plugin allows for occurrence data, stored at GBIF, BOLD systems, or iDigBio, to be be directly inserted into the manuscript. It all happens in the user-friendly environment of the AWT, where the imported data can be then edited before submission to the Biodiversity Data Journal.

Not having to retype or copy/paste species occurrence records, the authors save a lot of efforts. Moreover, they automatically import them in a structured Darwin Core format, which can be easily downloaded from the article text into structured data by anyone who needs the data for reuse after publication.

Another important aspect of the workflow is that it will serve as a platform for peer-review, publication and curation of raw data, that is of unpublished individual data records coming from collections or observations stored at GBIF, BOLD and iDigBio.

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

The 1st GLOBAQUA International Conference will be held on 11-12 January 2016 in Freising, Germany. The interdisciplinary conference will go under the motto "Managing The Effects Of Multiple Stressors On Aquatic Ecosystems Under Water Scarcity".

The conference will serve as a platform for exchange and discus­sion of innovative scientific findings and methods in aquatic ecosys­tems research. It will focus on novel methods of environmental monitor­ing and modeling of various scopes, scales and structural complexity to improve process understanding the interconnectivity and feedback mechanisms of climate (regional), land use (regional), economy, hydrol­ogy and hydraulics (catchment and river), water quality (river), biology and aquatic ecosystems (reach scale). Further, the conference builds the bridge to the scientific assessment of implications on policy and management.

The deadine for submitting an abstract for the conference has been now extended until 7 Nov 2015.

More information on the conference, registration, abstract submitting is available on the GLOBAQUA website.

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

The Biodiversity Indicators Partnership (BIP) Secretariat is looking for indicators to fill gaps in the global suite of biodiversity indicators and allow a full understanding of progress towards globally agreed targets.

They are inviting experts and organisations to participate in an open online consultation to fill the gaps in the global indicator framework for the Strategic Plan for Biodiversity 2011-2020. Through this short online survey they want to hear about any existing indicators (both global and sub-global in scale), indicators under development, potentially useful datasets or key experts or organisations in the fields. The main focus is on indicators that respond to the gaps in the global framework, which are listed on the attached flyer, but they are also keen to hear about any other indicators that could potentially enhance the existing indicator suite.

The consultation is open until 30 June 2016. Further information on the consultation is available in the attached flyer, the BIP website http://www.bipindicators.net/gaps, and the CBD notification SCBD/OES/RH/KNM/85710.

Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity.

The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures.

With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures.

The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses.

Find out more in the original research paper:

Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591

While development and implementation of data publishing and sharing practices and tools have long been among the core activities of the academic publisher Pensoft, it is well-understood that as part of scholarly publishing, open data practices are also currently in transition, and hence, require a lot of collaborative and consistent efforts to establish.

Based on Pensoft's experience, and elaborated and updated during the Framework Program 7 EU BON project, a new paper published in the EU BON dedicated collection in the open science journal Research Ideas and Outcomes (RIO), outlines policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data. Newly accumulated knowledge from large-scale international efforts, such as FORCE11 (Future of Research Communication and e-Scholarship), CODATA (The Committee on Data for Science and Technology), RDA (Research Data Alliance) and others, is also included in the Guidelines.

The present paper discusses some general concepts, including a definition of datasets, incentives to publish data and licences for data publishing. Furthermore, it defines and compares several routes for data publishing, namely: providing supplementary files to research articles; uploading them on specialised open data repositories, where they are linked to the research article; publishing standalone data papers; or making use of integrated narrative and data publishing through online import/download of data into/from manuscripts, such as the workflow provided by the Biodiversity Data Journal. Among the guidelines, there are also comprehensive instructions on preparation and peer review of data intended for publication.

Although currently available for journals using the developed by Pensoft journal publishing platform ARPHA, these strategies and guidelines could be of use for anyone interested in biodiversity data publishing.

Apart from paving the way for a whole new approach in data publishing, the present paper is also a fine example of science done in the open, having been published along with its two pre-submission public peer reviews. The reviews by Drs. Robert Mesibov and Florian Wetzel are both citable via their own Digital Object Identifiers (DOIs).

###

Original source:

Penev L, Mietchen D, Chavan V, Hagedorn G, Smith V, Shotton D, Ó Tuama É, Senderov V, Georgiev T, Stoev P, Groom Q, Remsen D, Edmunds S (2017) Strategies and guidelines for scholarly publishing of biodiversity data. Research Ideas and Outcomes 3: e12431. https://doi.org/10.3897/rio.3.e12431

Workshop on beta versions of data mobilization systems at the Swedish Museum of Natural History, Stockholm.

Registration link: http://goo.gl/forms/pCvjglXpcN

KT here: A memorial service for David was held on May 18, 2024. Although many friends and family members traveled to be present, the service was also streamed live for those who could not. For those who were unable to do either, a recording of the service has been posted on Vimeo. The link is […]

The Internet 2.0 gave us a great opportunity: user-generated content can allow anyone’s voice to be heard (a blessing or a curse?) and, as a ... Read more

The post Five Types of Classical music lovers you find online appeared first on CMUSE.

Town Clerk Ben Kaufman said the new design featuring Brookline's bird "celebrity" is to encourage turnout.

The post New Brookline ‘I voted’ stickers will feature a familiar face: a turkey appeared first on Boston.com.

As NAFTA talks grind on, thousands of skilled workers wonder if they will keep their jobs.

A Trade NAFTA or "T-N visa” allows citizens of Canada and Mexico to work in the US in a range of job categories. It could now be in jeopardy as the Trump administration seeks to renegotiate the trade agreement by the end of the year.

Also: There is a shortage of summer workers in Cape Cod, partly due to changes to a temporary worker visa program; as the US and China talk trade and tariffs, some in Shanghai wonder what it will mean for them; the end of Temporary Protected Status for some immigrants has an unexpected impact on US labour unions; plus we find out how TV reporter Lisa Howard changed the course of the Cold War.

(Image: Mexican Economy Minister Ildefonso Guajardo gives a message to the media during the seventh round of NAFTA (North American Free Trade Agreement) talks in Mexico City, on March 5, 2018. Credit: Ronaldo Schemidt/Getty Images)

Did Donald Trump commit treason in Helsinki? Legal experts weigh in on the “T” word.

Also: we learn all about Russia’s GRU, the country’s largest military intelligence agency; we remember Malaysia Airlines flight MH17 four years after it was shot down over eastern Ukraine; we meet Crimean families who have been displaced after Russia’s annexation of the peninsula; and finally Alina Simone, a Russian immigrant living in New York, explains why she has given up on teaching her daughter Russian.

(Image: US President Donald Trump and Russia's President Vladimir Putin attend a joint press conference in Helsinki. Credit: Getty Images)

Martina Navratilova made some controversial statements about transgender athletes. She said that it’s cheating when transgender women compete in women’s sports. But many activists disagree with her and are pushing back.

Also, find out why NBA basketball Enes Kanter fears going back home to Turkey; we have the harrowing story of Eritrean runner Teklit Michael’s near death experience; next the directors of the Oscar winning film ‘Free Solo’ describe how they captured Alex Honnald’s solo climb up El Capitan summit; and the French Fencing Federation has officially recognized lightsaber dueling as a competitive sport.

(Martina Navratilova participates in the 28th Annual Chris Evert/Raymond James Pro-Celebrity Tennis Classic at Delray Beach Tennis Center. Credit: Johnny Louis/Getty Images)

The paper was never completed after the teacher discovered its use of AI. The high schooler received a zero and was allowed to start again. He was given a D on the second effort.

The post Parents of Hingham student disciplined for using AI await federal judge’s ruling appeared first on Boston.com.

American Airlines is testing a new technology at three airports across the country during the boarding process that aims to cut down on passengers who try to jump the line

The post American Airlines tests boarding technology that audibly shames line cutters appeared first on Boston.com.

Chicago set the post-1900 record for losses in a season, going 41-121.

The Chicago Cubs are just a couple of pieces away from finally returning to the playoffs. In 2024, the Cubs were profoundly mediocre on both sides of the ball. Improving the rotation is a worthy objective for the Cubs, because Imanaga could be due for regression as the league adjusts to his unique high-spin fastball. Chicago may try for the Corbin Burneses and Max Frieds of the world, but perhaps a lower-budget option could turn out to be the perfect Cubs addition.

Joel Berry of The Babylon Bee joins CBN's Tré Goins-Phillips and Billy Hallowell to discuss the Bee's new book and how they use satire and laughter to navigate complicated issues in the world.

What does it take to win Olympic gold? To become "the world's fastest human"? This hour, Olympic fame, the politics of sports, and the science of running.

Original Air Date: July 31, 2021

Guests:

John Carlos — Gretchen Reynolds — Mark McClusky — Michael Powell

Interviews In This Hour:

The Fist and the 1968 Olympics — Walk, Run, Swim Or Bike — The Most Important Exercise Is Merely Movement — Faster, Higher, Stronger — The Magic of 'Rez Ball'

After a pandemic year of social isolation, we knew loneliness would be a problem. But public health officials have been warning for years that in countries all over the world, rates of loneliness are skyrocketing. How did loneliness become a condition of modern life?

Original Air Date: April 10, 2021

Guests: 

Jason Rohrer — Samantha Rose Hill — Claudia Rankine

Interviews In This Hour: 

My Friend Samantha (The A.I.) — How Loneliness Can Lead to Totalitarianism — Being Black and Alone in America

➡ Never want to miss an episode? Subscribe to the podcast. ???? 

➡ Want to read more from us, including photo galleries, extended Q&As and favorites from the archive? Subscribe to our newsletter. ????

Be informed on contractors’ rules if you are selling a product to them.

Wall and ceiling spray texture application has traditionally been a frustrating, inefficient and messy experience for professionals and DIYers alike. This year, DAP is reinventing wall and ceiling spray texture in formula, function and finish with the launch of a consistent and reliable product line that delivers a fast-drying, excellent texture match for maximum coverage and professional results.

ClarkDietrich is giving framing contractors greater flexibility in leveraging the firestopping power of its BlazeFrame family of products with the introduction of BlazeFrame Tape.

Today we talk through that terrible, horrible, uncomfortable word; Discipline. How do you effectively correct or discipline your team when/if it’s needed? Should it really come down to that? Oh boy.

James and Dustin dig deep into the realities of this topic within our worship teams and how to make sure we are the best we can be.

-----------------

The Worship Podcast is powered by All About Worship in partnership with WeAreWorship. This episode also features Song Capture.

Subscribe to the podcast:
theworshippodcast.com
linktr.ee/theworshippodcast 

You can also connect with The Worship Podcast on social media:
The Worship Podcast on Facebook
The Worship Podcast on Instagram
The Worship Podcast on Twitter

An important part of responsible power tool ownership is to appropriately dispose of rechargeable batteries at the end of their service life. Yes, lithium-ion batteries have revolutionized power tools and other devices by providing long-lasting, reliable power. However, no battery lasts forever.

The American Concrete Institute, in collaboration with NEx: An ACI Center of Excellence for Nonmetallic Building Materials, has released two new resources for fiber-reinforced polymer reinforcement.

CertainTeed, a leading North American manufacturer of building materials, today announced the launch of Terminus Transitions and Terminus Glazing Channels as new product extensions to the company’s Terminus Perimeter Trim line. The Terminus Perimeter Trim line is a premier suspension system accessory that allows for easy installation of suspended ceilings with exposed edges, including clouds, peninsulas and islands.

Curious as to the differences between drywall installation/taping in the U.S. vs. Mexico? Read on.

Westlake Royal Building Products, Inc. announced Sept. 7 that Palight Trimboard is now Skytrim, a sophisticated line of PVC trim options.

Plastic Components now offers individual brochures for its PVC Trims and Accessories product lines, which include stucco/plaster, stone veneer, drywall, Direct Applied Systems, Exterior Insulated Finish Systems and fiber cement board trims.

Sometimes the limits of what EIFS can do get pushed too far, and problems ensue. Usually these misguided uses of EIFS are well intentioned, and are due to a lack of understanding of the properties of EIFS.

I stood along the rail of an upper tier at the Nashville Convention Center, home of the 2009 AWCI Convention and Intex Expo trade show. I watched two middle-aged men approaching each other on opposing escalators, one going up, the other going down.

With the introduction of Tectum DesignArt– Lines Finale PB ceiling and wall panels, Armstrong World Industries offers architects and designers an opportunity to deliver unique visuals created by panels providing excellent sound absorption.

Werner introduced on Feb. 5 the new Bantam Switch, the first reverse-system self-retracting lifeline, for pros working at height. The SRL transfers weight of the housing unit from the user’s back to the anchor point and lightens the load to 0 pounds.

Leica Geosystems, part of Hexagon, announced on Sept. 12 the launch of the new Leica iCON trades solution, which pairs the Leica iCON iCS20 and Leica iCON iCS50 sensors with industry-tailored construction layout workflows. The new solution complements the industry-leading Leica iCON build portfolio.

The Portland Cement Association, representing America’s cement manufacturers, demonstrated the cement industry’s commitment to carbon neutrality to key executive branch decision-makers at the White House’s Concrete Innovation Summit – as well as outlined what steps must be taken to further reduce cement sector emissions.

Washington — The COVID-19 pandemic has “exacerbated” the challenges for OSHA and the Mine Safety and Health Administration to use their resources to protect the safety and health of workers, according to the Department of Labor Office of Inspector General.