Italian supercar manufacturer, Lamborghini, has virtually launched its Huracan EVO Rear-Wheel Drive Spyder in augmented reality, an unprecedented, and definitely an industry first for an unveiling.

The Hero Maestro Electric Proto concept electric scooter has been spotted ahead of its India launch. The eMaestro electric scooter will be the brand's first product offering to the EV segment in India.

Since India went under a complete lockdown, the doctors, nurses and other healthcare professionals who are selflessly taking care of the COVID-19 patients are facing a lot of problems due to social stigma and discrimination. Healthcare professionals and their families are

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By default, composing a new email in Gmail results in an HTML email under the hood. It’s possible to opt-out of that and use plain text email instead, but that leads to some problems.

The crystal and solution SAXS structures of a fragment of human leucocyte common antigen-related protein show that it is less flexible than the homologous proteins tyrosine phosphatase receptors δ and σ.

Apoptosis is a crucial process by which multicellular organisms control tissue growth, removal and inflammation. Disruption of the normal apoptotic function is often observed in cancer, where cell death is avoided by the overexpression of anti-apoptotic proteins of the Bcl-2 (B-cell lymphoma 2) family, including Mcl-1 (myeloid cell leukaemia 1). This makes Mcl-1 a potential target for drug therapy, through which normal apoptosis may be restored by inhibiting the protective function of Mcl-1. Here, the discovery and biophysical properties of an anti-Mcl-1 antibody fragment are described and the utility of both the scFv and Fab are demonstrated in generating an Mcl-1 crystal system amenable to iterative structure-guided drug design.

Fragment-based molecular-replacement methods can solve a macromolecular structure quasi-ab initio. ARCIMBOLDO, using a common secondary-structure or tertiary-structure template or a library of folds, locates these with Phaser and reveals the rest of the structure by density modification and autotracing in SHELXE. The latter stage is challenging when dealing with diffraction data at lower resolution, low solvent content, high β-sheet composition or situations in which the initial fragments represent a low fraction of the total scattering or where their accuracy is low. SEQUENCE SLIDER aims to overcome these complications by extending the initial polyalanine fragment with side chains in a multisolution framework. Its use is illustrated on test cases and previously unknown structures. The selection and order of fragments to be extended follows the decrease in log-likelihood gain (LLG) calculated with Phaser upon the omission of each single fragment. When the starting substructure is derived from a remote homolog, sequence assignment to fragments is restricted by the original alignment. Otherwise, the secondary-structure prediction is matched to that found in fragments and traces. Sequence hypotheses are trialled in a brute-force approach through side-chain building and refinement. Scoring the refined models through their LLG in Phaser may allow discrimination of the correct sequence or filter the best partial structures for further density modification and autotracing. The default limits for the number of models to pursue are hardware dependent. In its most economic implementation, suitable for a single laptop, the main-chain trace is extended as polyserine rather than trialling models with different sequence assignments, which requires a grid or multicore machine. SEQUENCE SLIDER has been instrumental in solving two novel structures: that of MltC from 2.7 Å resolution data and that of a pneumococcal lipoprotein with 638 residues and 35% solvent content.

Fragment-based molecular replacement exploits the use of very accurate yet incomplete search models. In the case of the ARCIMBOLDO programs, consistent phase sets produced from the placement and refinement of fragments with Phaser can be combined in order to increase their signal before proceeding to the step of density modification and autotracing with SHELXE. The program ALIXE compares multiple phase sets, evaluating mean phase differences to determine their common origin, and subsequently produces sets of combined phases that group consistent solutions. In this work, its use on different scenarios of very partial molecular-replacement solutions and its performance after the development of a much-optimized set of algorithms are described. The program is available both standalone and integrated within the ARCIMBOLDO programs. ALIXE has been analysed to identify its rate-limiting steps while exploring the best parameterization to improve its performance and make this software efficient enough to work on modest hardware. The algorithm has been parallelized and redesigned to meet the typical landscape of solutions. Analysis of pairwise correlation between the phase sets has also been explored to test whether this would provide additional insight. ALIXE can be used to exhaustively analyse all partial solutions produced or to complement those already selected for expansion, and also to reduce the number of redundant solutions, which is particularly relevant to the case of coiled coils, or to combine partial solutions from different programs. In each case parallelization and optimization to provide speedup makes its use amenable to typical hardware found in crystallography. ARCIMBOLDO_BORGES and ARCIMBOLDO_SHREDDER now call on ALIXE by default.

The analysis of large structural databases reveals general features and relationships among proteins, providing useful insight. A different approach is required to characterize ubiquitous secondary-structure elements, where flexibility is essential in order to capture small local differences. The ALEPH software is optimized for the analysis and the extraction of small protein folds by relying on their geometry rather than on their sequence. The annotation of the structural variability of a given fold provides valuable information for fragment-based molecular-replacement methods, in which testing alternative model hypotheses can succeed in solving difficult structures when no homology models are available or are successful. ARCIMBOLDO_BORGES combines the use of composite secondary-structure elements as a search model with density modification and tracing to reveal the rest of the structure when both steps are successful. This phasing method relies on general fold libraries describing variations around a given pattern of β-sheets and helices extracted using ALEPH. The program introduces characteristic vectors defined from the main-chain atoms as a way to describe the geometrical properties of the structure. ALEPH encodes structural properties in a graph network, the exploration of which allows secondary-structure annotation, decomposition of a structure into small compact folds, generation of libraries of models representing a variation of a given fold and finally superposition of these folds onto a target structure. These functions are available through a graphical interface designed to interactively show the results of structure manipulation, annotation, fold decomposition, clustering and library generation. ALEPH can produce pictures of the graphs, structures and folds for publication purposes.

Immunoglobulin E (IgE) plays a central role in the allergic response, in which cross-linking of allergen by Fc∊RI-bound IgE triggers mast cell and basophil degranulation and the release of inflammatory mediators. The high-affinity interaction between IgE and Fc∊RI is a long-standing target for therapeutic intervention in allergic disease. Omalizumab is a clinically approved anti-IgE monoclonal antibody that binds to free IgE, also with high affinity, preventing its interaction with Fc∊RI. All attempts to crystallize the pre-formed complex between the omalizumab Fab and the Fc region of IgE (IgE-Fc), to understand the structural basis for its mechanism of action, surprisingly failed. Instead, the Fab alone selectively crystallized in different crystal forms, but their structures revealed intermolecular Fab/Fab interactions that were clearly strong enough to disrupt the Fab/IgE-Fc complexes. Some of these interactions were common to other Fab crystal structures. Mutations were therefore designed to disrupt two recurring packing interactions observed in the omalizumab Fab crystal structures without interfering with the ability of the omalizumab Fab to recognize IgE-Fc; this led to the successful crystallization and subsequent structure determination of the Fab/IgE-Fc complex. The mutagenesis strategy adopted to achieve this result is applicable to other intractable Fab/antigen complexes or systems in which Fabs are used as crystallization chaperones.

Mycobacterium tuberculosis produces glycogen (also known as α-glucan) to help evade human immunity. This pathogen uses the GlgE pathway to generate glycogen rather than the more well known glycogen synthase GlgA pathway, which is absent in this bacterium. Thus, the building block for this glucose polymer is α-maltose-1-phosphate rather than an NDP-glucose donor. One of the routes to α-maltose-1-phosphate is now known to involve the GlgA homologue GlgM, which uses ADP-glucose as a donor and α-glucose-1-phosphate as an acceptor. To help compare GlgA (a GT5 family member) with GlgM enzymes (GT4 family members), the X-ray crystal structure of GlgM from Mycobacterium smegmatis was solved to 1.9 Å resolution. While the enzymes shared a GT-B fold and several residues responsible for binding the donor substrate, they differed in some secondary-structural details, particularly in the N-terminal domain, which would be expected to be largely responsible for their different acceptor-substrate specificities.

Researchers from the Smithsonian Institution and the University of Florida have announced the discovery of a bone fragment, approximately 13,000 years old, in Florida with an incised image of a mammoth or mastodon.

The post Bone fragment is only Ice Age artwork from America to show a “proboscidean” appeared first on Smithsonian Insider.

Recent spectroscopic analysis of macaroni penguin (Eudyptes chrysolophus) crest feathers and king penguin (Aptenodytes patagonicus) neck feathers have shown they contain a yellow pigment that […]

The post Yellow pigment in penguin feathers is chemically distinct, spectroscopic studies reveal appeared first on Smithsonian Insider.

A research team from the Smithsonian and Arizona State University have developed a new, non-destructive method using spectroscopic analysis to help unravel the complex chemistry […]

The post Feathers yield mysteries of pigment chemistry to spectroscopic analysis appeared first on Smithsonian Insider.

Size isn’t the only thing that’s small about the pygmy sloth―its population is too. But scientists at the Smithsonian say things may be looking up […]

The post Study reveals more Pygmy Sloths, But There Still Aren’t Many appeared first on Smithsonian Insider.

The pink-headed duck was no lucky duck. In 1948 a single specimen of this waterfowl, Rhodonessa caryophyllacea, was donated to the Division of Birds of […]

The post Carotenoid pigments make extinct duck a rare bird indeed appeared first on Smithsonian Insider.

Leucocyte common antigen-related protein (LAR) is a post-synaptic type I transmembrane receptor protein that is important for neuronal functionality and is genetically coupled to neuronal disorders such as attention deficit hyperactivity disorder (ADHD). To understand the molecular function of LAR, structural and biochemical studies of protein fragments derived from the ectodomain of human LAR have been performed. The crystal structure of a fragment encompassing the first four FNIII domains (LARFN1–4) showed a characteristic L shape. SAXS data suggested limited flexibility within LARFN1–4, while rigid-body refinement of the SAXS data using the X-ray-derived atomic model showed a smaller angle between the domains defining the L shape compared with the crystal structure. The capabilities of the individual LAR fragments to interact with heparin was examined using microscale thermophoresis and heparin-affinity chromatography. The results showed that the three N-terminal immunoglobulin domains (LARIg1–3) and the four C-terminal FNIII domains (LARFN5–8) both bound heparin, while LARFN1–4 did not. The low-molecular-weight heparin drug Innohep induced a shift in hydrodynamic volume as assessed by size-exclusion chromatography of LARIg1–3 and LARFN5–8, while the chemically defined pentameric heparin drug Arixtra did not. Together, the presented results suggest the presence of an additional heparin-binding site in human LAR.

In this study, the atomic structure of the ternary icosahedral ZnMgTm quasicrystal (QC) is investigated by means of single-crystal X-ray diffraction. The structure is found to be a member of the Bergman QC family, frequently found in Zn–Mg–rare-earth systems. The ab initio structure solution was obtained by the use of the Superflip software. The infinite structure model was founded on the atomic decoration of two golden rhombohedra, with an edge length of 21.7 Å, constituting the Ammann–Kramer–Neri tiling. The refined structure converged well with the experimental diffraction diagram, with the crystallographic R factor equal to 9.8%. The Bergman clusters were found to be bonded by four possible linkages. Only two linkages, b and c, are detected in approximant crystals and are employed to model the icosahedral QCs in the cluster approach known for the CdYb Tsai-type QC. Additional short b and a linkages are found in this study. Short interatomic distances are not generated by those linkages due to the systematic absence of atoms and the formation of split atomic positions. The presence of four linkages allows the structure to be pictured as a complete covering by rhombic triacontahedral clusters and consequently there is no need to define the interstitial part of the structure (i.e. that outside the cluster). The 6D embedding of the solved structure is discussed for the final verification of the model.

Bird species in rainforest fragments in Brazil that were isolated by deforestation first disappeared and then reappeared during the next quarter-century.

The post “Extinct” birds reappear in rainforest fragments in Brazil appeared first on Smithsonian Insider.

Ancient pollen and charcoal preserved in deeply buried sediments in Egypt’s Nile Delta document the region’s ancient droughts and fires, including a huge drought 4,200 years ago associated with the demise of Egypt’s Old Kingdom.

The post Fossil pollen used to augment climate record of Egypt’s Nile Delta appeared first on Smithsonian Insider.

A congressionally mandated report from the National Research Council finds serious deficiencies in the nations forensic science system and calls for major reforms and new research.

A new report from the National Academies of Sciences, Engineering, and Medicine examines policies and practices governing dual-use research in the life sciences – research that could potentially be misused to cause harm – and its findings identify multiple shortcomings.

The opioid epidemic in the U.S. is driving a simultaneous epidemic of infectious diseases — including HIV, hepatitis C virus (HCV) and bacterial infections, and sexually transmitted infections — but workforce shortages, stigma, and financial and policy barriers are preventing the integration of opioid use disorder (OUD) and infectious disease services, says a new report from the National Academies of Sciences, Engineering, and Medicine.

Although less invasive and more evidence-based approaches are available for temporomandibular disorders (TMDs) – a set of 30 disorders that cause pain or malfunction in the jaw joint and muscles of the jaw – some dentists continue to rely on aggressive or costly procedures as a first-line treatment, says a new report from the National Academies of Sciences, Engineering, and Medicine.

Fragments of crushed rock released into the ocean during oil and gas exploration can physically bury organisms that live on the seafloor, accounting for 55% of offshore drilling???s environmental impact, according to a recent study. To allow more informed marine policy decisions, this physical impact must be recognised alongside the impact of chemicals released in drilling waste.

A new study has investigated the effects of interbreeding a genetically modified squash crop with its wild relative. The findings demonstrate that it could cause wild or weedy relatives to become more resistant to disease.

A recent EU-supported study has analysed the development of volunteer or ‘rogue’ GM (genetically modified) maize plants in a conventional crop field. It finds that their numbers are low and do not exceed the EU’s threshold of 0.9 per cent for incidental GM content.

Astrophysicists from the Johns Hopkins University have proposed a clever new way of shedding light on the mystery of dark matter, believed to make up most of the universe.

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Effective regulation of genetically modified organisms (GMOs) calls for monitoring of the potential environmental risks. This study explored whether the German permanent soil monitoring programme could be a useful tool for this purpose. The researchers say the programme has potential to monitor the effects of GMOs on local soil communities, but that adaptations would be necessary.

Plastic pollution is a threat to marine ecosystems, as plastics are persistent, toxic and can accumulate up the food chain. This study assessed the abundance of small pieces of plastic in Alang, India. The authors found, on average, 81 mg of small plastic fragments per kg of sediment, which they say is the direct result of shipbreaking.

The fragmentation of habitats is a growing concern for nature conservation. Butterflies and moths are particularly sensitive and new research has shed light on what makes some species more vulnerable than others. Those that are less mobile with more specialist diets and less reproductive potential appear to be more affected by habitat fragmentation.

Scientists have proposed new recommendations to increase the species diversity and sustainability of Mediterranean forests, since programmes to enhance reforestation by planting vast areas of pine trees have not been as successful as planned.

Transport infrastructure and urban sprawl are increasingly dividing up landscapes in Europe, threatening wildlife. A new report has quantified landscape fragmentation across 28 European countries. To prevent further negative environmental impacts, it recommends protecting unfragmented areas, monitoring fragmentation and applying fragmentation analysis in planning.

A new study exploring the sensitivity of grassland and forest plants to decreasing habitat size and isolation in north-central Europe concludes that an irreversible shift in the most dominant plant species may already be underway in forests and grassland, where forests are more vulnerable than grasslands.

The importance of 'stepping stone' patches of habitat for biodiversity has been underestimated, a new study suggests. The researchers developed a new connectivity model, which better captures the effects of stepping stones on species movement.

The fragmentation of brown trout (Salmo trutta) habitat indirectly affects the threatened freshwater pearl mussel (Margaritifera margaritifera), a new study has shown. Dams and weirs, which affect the migration of the fish, also have a knock-on effect on the mussels, because they rely on brown trout during the larval stage of their lives.

This study is one of few to assess the genetic diversity of crops in an agroecosystem over several years. Researchers analysed the genetic makeup of oilseed rape plants within and outside crop fields over four years. They found similarity between cultivars of field plants in one year and those of feral plants (unplanted) in the following year. They also found persistence of the cultivars within the feral plants, which suggests that feral populations with genetically modified (GM) traits might result from persistent GM traits within field seed banks. The researchers say their findings could aid impact assessments of GM crops.

Free-flowing rivers (FFRs) support a complex, dynamic and diverse range of global ecosystems, and provide important economic and societal services. However, infrastructure built to use these services — most notably 2.8 million dams worldwide — has caused many rivers to become fragmented and disconnected, affecting river biodiversity and ecosystem services. This study constructed a global information system with which to map the fine-scale dynamics and fragmentation of FFRs and to determine how human pressures affect the world’s river systems.

A new study shows how titanium dioxide nanoparticles used in sunscreens may cause cancer in mice. Although there is no proof that the nanoparticles can cause cancer in humans, the researchers say the study raises concerns about the safety of workers exposed to high concentrations of the nanoparticles in factory settings.

Flexible measures, such as pollen barriers, for regulating the cultivation of GM and non-GM crops in the same landscape are more likely to encourage the adoption of GM technology by farmers than rigid measures, such as isolation distances, according to a recent study.

New pest management strategies may be needed in landscapes where certain types of GM crop are grown, according to recent research. The study found that GM cotton grown in China, designed to resist insect attack, has had an unintended consequence: reduced insecticide use has allowed outbreaks of non-target organisms to infest crops across the agricultural landscape and emerge as new pests.

A new analysis calls for clear policy guidelines to be adopted in developing countries to direct the development of genetically modified crops which could help contribute to greater food security in developing countries.

Populations of the European corn borer, a major pest of maize plants, fell significantly in areas where Bt maize (genetically modified maize) was planted alongside non-Bt maize, in a recent US study. This means that farmers who plant conventional maize crops could reap this benefit from farmers who plant Bt maize in the same landscape.

Research from the UK and the Netherlands suggests that applying a new risk analysis approach for GM food products could improve the chances of the products being accepted by the public. The approach considers benefits as well as risks.

New research suggests that feral oilseed rape poses little risk of contaminating crops, but if the oilseed is genetically modified (GM), it could be a minor source of GM traits in weeds. Throughout Europe, feral oilseed rape is now widespread on waysides and wasteland, making it potentially more problematic than some other crops, such as maize, which do not easily establish feral populations.