lit A new small-angle X-ray scattering model for polymer spherulites with a limited lateral size of the lamellar crystals By scripts.iucr.org Published On :: 2019-08-31 As is well known, polymers commonly form lamellar crystals, and these assemble further into lamellar stacks and spherulites during quiescent crystallization. Fifty years ago, Vonk and Kortleve constructed the classical small-angle X-ray scattering theory (SAXS) for a lamellar system, in which it was assumed that the lamellar stack had an infinite lateral size [Vonk & Kortleve (1967), Kolloid Z. Z. Polym. 220, 19–24]. Under this assumption, only crystal planes satisfying the Bragg condition can form strong scattering, and the scattering from the lamellar stack arises from the difference between the scattering intensities in the amorphous and crystalline layers, induced by the incident X-ray beam. This assumption is now deemed unreasonable. In a real polymer spherulite, the lamellar crystal commonly has dimensions of only a few hundred nanometres. At such a limited lateral size, lamellar stacks in a broad orientation have similar scattering, so interference between these lamellar stacks must be considered. Scattering from lamellar stacks parallel to the incident X-ray beam also needs to be considered when total reflection occurs. In this study, various scattering contributions from lamellar stacks in a spherulite are determined. It is found that, for a limited lateral size, the scattering induced by the incident X-ray beam is not the main origin of SAXS. It forms double peaks, which are not observed in real scattering because of destructive interference between the lamellar stacks. The scattering induced by the evanescent wave is the main origin. It can form a similar interference pattern to that observed in a real SAXS measurement: a Guinier region in the small-q range, a signal region in the intermediate-q range and a Porod region in the high-q range. It is estimated that, to avoid destructive interference, the lateral size needs to be greater than 11 µm, which cannot be satisfied in a real lamellar system. Therefore, SAXS in a real polymer system arises largely from the scattering induced by the evanescent wave. Evidence for the existence of the evanescent wave was identified in the scattering of isotactic polypropylene. This study corrects a long-term misunderstanding of SAXS in a polymer lamellar system. Full Article text
lit Engineering a surrogate human heteromeric α/β glycine receptor orthosteric site exploiting the structural homology and stability of acetylcholine-binding protein By scripts.iucr.org Published On :: 2019-09-04 Protein-engineering methods have been exploited to produce a surrogate system for the extracellular neurotransmitter-binding site of a heteromeric human ligand-gated ion channel, the glycine receptor. This approach circumvents two major issues: the inherent experimental difficulties in working with a membrane-bound ion channel and the complication that a heteromeric assembly is necessary to create a key, physiologically relevant binding site. Residues that form the orthosteric site in a highly stable ortholog, acetylcholine-binding protein, were selected for substitution. Recombinant proteins were prepared and characterized in stepwise fashion exploiting a range of biophysical techniques, including X-ray crystallography, married to the use of selected chemical probes. The decision making and development of the surrogate, which is termed a glycine-binding protein, are described, and comparisons are provided with wild-type and homomeric systems that establish features of molecular recognition in the binding site and the confidence that the system is suited for use in early-stage drug discovery targeting a heteromeric α/β glycine receptor. Full Article text
lit Consistency and variability of cocrystals containing positional isomers: the self-assembly evolution mechanism of supramolecular synthons of cresol–piperazine By scripts.iucr.org Published On :: 2019-10-09 The disposition of functional groups can induce variations in the nature and type of interactions and hence affect the molecular recognition and self-assembly mechanism in cocrystals. To better understand the formation of cocrystals on a molecular level, the effects of disposition of functional groups on the formation of cocrystals were systematically and comprehensively investigated using cresol isomers (o-, m-, p-cresol) as model compounds. Consistency and variability in these cocrystals containing positional isomers were found and analyzed. The structures, molecular recognition and self-assembly mechanism of supramolecular synthons in solution and in their corresponding cocrystals were verified by a combined experimental and theoretical calculation approach. It was found that the heterosynthons (heterotrimer or heterodimer) combined with O—H⋯N hydrogen bonding played a significant role. Hirshfeld surface analysis and computed interaction energy values were used to determine the hierarchical ordering of the weak interactions. The quantitative analyses of charge transfers and molecular electrostatic potential were also applied to reveal and verify the reasons for consistency and variability. Finally, the molecular recognition, self-assembly and evolution process of the supramolecular synthons in solution were investigated. The results confirm that the supramolecular synthon structures formed initially in solution would be carried over to the final cocrystals, and the supramolecular synthon structures are the precursors of cocrystals and the information memory of the cocrystallization process, which is evidence for classical nucleation theory. Full Article text
lit Mutagenesis facilitated crystallization of GLP-1R By scripts.iucr.org Published On :: 2019-10-17 The class B family of G-protein-coupled receptors (GPCRs) has long been a paradigm for peptide hormone recognition and signal transduction. One class B GPCR, the glucagon-like peptide-1 receptor (GLP-1R), has been considered as an anti-diabetes drug target and there are several peptidic drugs available for the treatment of this overwhelming disease. The previously determined structures of inactive GLP-1R in complex with two negative allosteric modulators include ten thermal-stabilizing mutations that were selected from a total of 98 designed mutations. Here we systematically summarize all 98 mutations we have tested and the results suggest that the mutagenesis strategy that strengthens inter-helical hydrophobic interactions shows the highest success rate. We further investigate four back mutations by thermal-shift assay, crystallization and molecular dynamic simulations, and conclude that mutation I1962.66bF increases thermal stability intrinsically and that mutation S2714.47bA decreases crystal packing entropy extrinsically, while mutations S1932.63bC and M2333.36bC may be dispensable since these two cysteines are not disulfide-linked. Our results indicate intrinsic connections between different regions of GPCR transmembrane helices and the current data suggest a general mutagenesis principle for structural determination of GPCRs and other membrane proteins. Full Article text
lit Refinement for single-nanoparticle structure determination from low-quality single-shot coherent diffraction data By scripts.iucr.org Published On :: 2020-01-01 With the emergence of X-ray free-electron lasers, it is possible to investigate the structure of nanoscale samples by employing coherent diffractive imaging in the X-ray spectral regime. In this work, we developed a refinement method for structure reconstruction applicable to low-quality coherent diffraction data. The method is based on the gradient search method and considers the missing region of a diffraction pattern and the small number of detected photons. We introduced an initial estimate of the structure in the method to improve the convergence. The present method is applied to an experimental diffraction pattern of an Xe cluster obtained in an X-ray scattering experiment at the SPring-8 Angstrom Compact free-electron LAser (SACLA) facility. It is found that the electron density is successfully reconstructed from the diffraction pattern with a large missing region, with a good initial estimate of the structure. The diffraction pattern calculated from the reconstructed electron density reproduced the observed diffraction pattern well, including the characteristic intensity modulation in each ring. Our refinement method enables structure reconstruction from diffraction patterns under difficulties such as missing areas and low diffraction intensity, and it is potentially applicable to the structure determination of samples that have low scattering power. Full Article text
lit The resolution revolution in cryoEM requires high-quality sample preparation: a rapid pipeline to a high-resolution map of yeast fatty acid synthase By scripts.iucr.org Published On :: 2020-01-25 Single-particle electron cryo-microscopy (cryoEM) has undergone a `resolution revolution' that makes it possible to characterize megadalton (MDa) complexes at atomic resolution without crystals. To fully exploit the new opportunities in molecular microscopy, new procedures for the cloning, expression and purification of macromolecular complexes need to be explored. Macromolecular assemblies are often unstable, and invasive construct design or inadequate purification conditions and sample-preparation methods can result in disassembly or denaturation. The structure of the 2.6 MDa yeast fatty acid synthase (FAS) has been studied by electron microscopy since the 1960s. Here, a new, streamlined protocol for the rapid production of purified yeast FAS for structure determination by high-resolution cryoEM is reported. Together with a companion protocol for preparing cryoEM specimens on a hydrophilized graphene layer, the new protocol yielded a 3.1 Å resolution map of yeast FAS from 15 000 automatically picked particles within a day. The high map quality enabled a complete atomic model of an intact fungal FAS to be built. Full Article text
lit Experimental charge density of grossular under pressure – a feasibility study By scripts.iucr.org Published On :: 2020-03-07 X-ray diffraction studies of crystals under pressure and quantitative experimental charge density analysis are among the most demanding types of crystallographic research. A successful feasibility study of the electron density in the mineral grossular under 1 GPa pressure conducted at the CRISTAL beamline at the SOLEIL synchrotron is presented in this work. A single crystal was placed in a diamond anvil cell, but owing to its special design (wide opening angle), short synchrotron wavelength and the high symmetry of the crystal, data with high completeness and high resolution were collected. This allowed refinement of a full multipole model of experimental electron distribution. Results are consistent with the benchmark measurement conducted without a diamond-anvil cell and also with the literature describing investigations of similar structures. Results of theoretical calculations of electron density distribution on the basis of dynamic structure factors mimic experimental findings very well. Such studies allow for laboratory simulations of processes which take place in the Earth's mantle. Full Article text
lit New zeolite-like RUB-5 and its related hydrous layer silicate RUB-6 structurally characterized by electron microscopy By scripts.iucr.org Published On :: 2020-04-21 This study made use of a recently developed combination of advanced methods to reveal the atomic structure of a disordered nanocrystalline zeolite using exit wave reconstruction, automated diffraction tomography, disorder modelling and diffraction pattern simulation. By applying these methods, it was possible to determine the so far unknown structures of the hydrous layer silicate RUB-6 and the related zeolite-like material RUB-5. The structures of RUB-5 and RUB-6 contain the same dense layer-like building units (LLBUs). In the case of RUB-5, these building units are interconnected via additional SiO4/2 tetrahedra, giving rise to a framework structure with a 2D pore system consisting of intersecting 8-ring channels. In contrast, RUB-6 contains these LLBUs as separate silicate layers terminated by silanol/siloxy groups. Both RUB-6 and RUB-5 show stacking disorder with intergrowths of different polymorphs. The unique structure of RUB-6, together with the possibility for an interlayer expansion reaction to form RUB-5, make it a promising candidate for interlayer expansion with various metal sources to include catalytically active reaction centres. Full Article text
lit Fast and accurate defocus modulation for improved tunability of cryo-EM experiments By scripts.iucr.org Published On :: 2020-04-25 Current data collection strategies in electron cryo-microscopy (cryo-EM) record multiframe movies with static optical settings. This limits the number of adjustable parameters that can be used to optimize the experiment. Here, a method for fast and accurate defocus (FADE) modulation during movie acquisition is proposed. It uses the objective lens aperture as an electrostatic pole that locally modifies the electron beam potential. The beam potential variation is converted to defocus change by the typically undesired chromatic aberration of the objective lens. The simplicity, electrostatic principle and low electrical impedance of the device allow fast switching speeds that will enable per-frame defocus modulation of cryo-EM movies. Researchers will be able to define custom defocus `recipes' and tailor the experiment for optimal information extraction from the sample. The FADE method could help to convert the microscope into a more dynamic and flexible optical platform that delivers better performance in cryo-EM single-particle analysis and electron cryo-tomography. Full Article text
lit CM01: a facility for cryo-electron microscopy at the European Synchrotron By scripts.iucr.org Published On :: 2019-05-28 Recent improvements in direct electron detectors, microscope technology and software provided the stimulus for a `quantum leap' in the application of cryo-electron microscopy in structural biology, and many national and international centres have since been created in order to exploit this. Here, a new facility for cryo-electron microscopy focused on single-particle reconstruction of biological macromolecules that has been commissioned at the European Synchrotron Radiation Facility (ESRF) is presented. The facility is operated by a consortium of institutes co-located on the European Photon and Neutron Campus and is managed in a similar fashion to a synchrotron X-ray beamline. It has been open to the ESRF structural biology user community since November 2017 and will remain open during the 2019 ESRF–EBS shutdown. Full Article text
lit The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level By scripts.iucr.org Published On :: 2019-09-24 The Y128F single mutant of p-hydroxymandelate oxidase (Hmo) is capable of oxidizing mandelate to benzoate via a four-electron oxidative decarboxylation reaction. When benzoylformate (the product of the first two-electron oxidation) and hydrogen peroxide (an oxidant) were used as substrates the reaction did not proceed, suggesting that free hydrogen peroxide is not the committed oxidant in the second two-electron oxidation. How the flavin mononucleotide (FMN)-dependent four-electron oxidation reaction takes place remains elusive. Structural and biochemical explorations have shed new light on this issue. 15 high-resolution crystal structures of Hmo and its mutants liganded with or without a substrate reveal that oxidized FMN (FMNox) possesses a previously unknown electrophilic/nucleophilic duality. In the Y128F mutant the active-site perturbation ensemble facilitates the polarization of FMNox to a nucleophilic ylide, which is in a position to act on an α-ketoacid, forming an N5-acyl-FMNred dead-end adduct. In four-electron oxidation, an intramolecular disproportionation reaction via an N5-alkanol-FMNred C'α carbanion intermediate may account for the ThDP/PLP/NADPH-independent oxidative decarboxylation reaction. A synthetic 5-deaza-FMNox cofactor in combination with an α-hydroxyamide or α-ketoamide biochemically and structurally supports the proposed mechanism. Full Article text
lit Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis By scripts.iucr.org Published On :: 2019-10-01 Full Article text
lit Controlled dehydration, structural flexibility and gadolinium MRI contrast compound binding in the human plasma glycoprotein afamin By scripts.iucr.org Published On :: 2019-11-19 Afamin, which is a human blood plasma glycoprotein, a putative multifunctional transporter of hydrophobic molecules and a marker for metabolic syndrome, poses multiple challenges for crystallographic structure determination, both practically and in analysis of the models. Several hundred crystals were analysed, and an unusual variability in cell volume and difficulty in solving the structure despite an ∼34% sequence identity with nonglycosylated human serum albumin indicated that the molecule exhibits variable and context-sensitive packing, despite the simplified glycosylation in insect cell-expressed recombinant afamin. Controlled dehydration of the crystals was able to stabilize the orthorhombic crystal form, reducing the number of molecules in the asymmetric unit from the monoclinic form and changing the conformational state of the protein. An iterative strategy using fully automatic experiments available on MASSIF-1 was used to quickly determine the optimal protocol to achieve the phase transition, which should be readily applicable to many types of sample. The study also highlights the drawback of using a single crystallographic structure model for computational modelling purposes given that the conformational state of the binding sites and the electron density in the binding site, which is likely to result from PEGs, greatly varies between models. This also holds for the analysis of nonspecific low-affinity ligands, where often a variety of fragments with similar uncertainty can be modelled, inviting interpretative bias. As a promiscuous transporter, afamin also seems to bind gadoteridol, a magnetic resonance imaging contrast compound, in at least two sites. One pair of gadoteridol molecules is located near the human albumin Sudlow site, and a second gadoteridol molecule is located at an intermolecular site in proximity to domain IA. The data from the co-crystals support modern metrics of data quality in the context of the information that can be gleaned from data sets that would be abandoned on classical measures. Full Article text
lit Estimating local protein model quality: prospects for molecular replacement By scripts.iucr.org Published On :: 2020-03-03 Model quality assessment programs estimate the quality of protein models and can be used to estimate local error in protein models. ProQ3D is the most recent and most accurate version of our software. Here, it is demonstrated that it is possible to use local error estimates to substantially increase the quality of the models for molecular replacement (MR). Adjusting the B factors using ProQ3D improved the log-likelihood gain (LLG) score by over 50% on average, resulting in significantly more successful models in MR compared with not using error estimates. On a data set of 431 homology models to address difficult MR targets, models with error estimates from ProQ3D received an LLG of >50 for almost half of the models 209/431 (48.5%), compared with 175/431 (40.6%) for the previous version, ProQ2, and only 74/431 (17.2%) for models with no error estimates, clearly demonstrating the added value of using error estimates to enable MR for more targets. ProQ3D is available from http://proq3.bioinfo.se/ both as a server and as a standalone download. Full Article text
lit Industrial cryo-EM facility setup and management By scripts.iucr.org Published On :: 2020-04-06 Cryo-electron microscopy (cryo-EM) has rapidly expanded with the introduction of direct electron detectors, improved image-processing software and automated image acquisition. Its recent adoption by industry, particularly in structure-based drug design, creates new requirements in terms of reliability, reproducibility and throughput. In 2016, Thermo Fisher Scientific (then FEI) partnered with the Medical Research Council Laboratory of Molecular Biology, the University of Cambridge Nanoscience Centre and five pharmaceutical companies [Astex Pharmaceuticals, AstraZeneca, GSK, Sosei Heptares and Union Chimique Belge (UCB)] to form the Cambridge Pharmaceutical Cryo-EM Consortium to share the risks of exploring cryo-EM for early-stage drug discovery. The Consortium expanded with a second Themo Scientific Krios Cryo-EM at the University of Cambridge Department of Materials Science and Metallurgy. Several Consortium members have set up in-house facilities, and a full service cryo-EM facility with Krios and Glacios has been created with the Electron Bio-Imaging Centre for Industry (eBIC for Industry) at Diamond Light Source (DLS), UK. This paper will cover the lessons learned during the setting up of these facilities, including two Consortium Krios microscopes and preparation laboratories, several Glacios microscopes at Consortium member sites, and a Krios and Glacios at eBIC for Industry, regarding site evaluation and selection for high-resolution cryo-EM microscopes, the installation process, scheduling, the operation and maintenance of the microscopes and preparation laboratories, and image processing. Full Article text
lit Measurement of the horizontal beam emittance of undulator radiation by tandem-double-slit optical system By scripts.iucr.org Published On :: 2020-04-15 A tandem-double-slit optical system was constructed to evaluate the practical beam emittance of undulator radiation. The optical system was a combination of an upstream slit (S1) and downstream slit (S2) aligned on the optical axis with an appropriate separation. The intensity distribution after the double slits, I(x1, x2), was measured by scanning S1 and S2 in the horizontal direction. Coordinates having 1/sqrt e intensity were extracted from I(x1, x2), whose contour provided the standard deviation ellipse in the x1–x2 space. I(x1, x2) was converted to the corresponding distribution in the phase space, I(x1, x1'). The horizontal beam emittance was evaluated to be 3.1 nm rad, which was larger than the value of 2.4 nm rad estimated by using ray-tracing. It was found that the increase was mainly due to an increase in beam divergence rather than size. Full Article text
lit FXD-CSD-GUI: a graphical user interface for the X-ray-diffraction-based determination of crystallite size distributions By scripts.iucr.org Published On :: 2019-10-22 Bragg intensities can be used to analyse crystal size distributions in a method called FXD-CSD, which is based on the fast measurement of many Bragg spots using two-dimensional detectors. This work presents the Python-based software and its graphical user interface FXD-CSD-GUI. The GUI enables user-friendly data handling and processing and provides both graphical and numerical crystal size distribution results. Full Article text
lit Real- and Q-space travelling: multi-dimensional distribution maps of crystal-lattice strain (∊044) and tilt of suspended monolithic silicon nanowire structures By scripts.iucr.org Published On :: 2020-02-01 Silicon nanowire-based sensors find many applications in micro- and nano-electromechanical systems, thanks to their unique characteristics of flexibility and strength that emerge at the nanoscale. This work is the first study of this class of micro- and nano-fabricated silicon-based structures adopting the scanning X-ray diffraction microscopy technique for mapping the in-plane crystalline strain (∊044) and tilt of a device which includes pillars with suspended nanowires on a substrate. It is shown how the micro- and nanostructures of this new type of nanowire system are influenced by critical steps of the fabrication process, such as electron-beam lithography and deep reactive ion etching. X-ray analysis performed on the 044 reflection shows a very low level of lattice strain (<0.00025 Δd/d) but a significant degree of lattice tilt (up to 0.214°). This work imparts new insights into the crystal structure of micro- and nanomaterial-based sensors, and their relationship with critical steps of the fabrication process. Full Article text
lit A routine for the determination of the microstructure of stacking-faulted nickel cobalt aluminium hydroxide precursors for lithium nickel cobalt aluminium oxide battery materials By scripts.iucr.org Published On :: 2020-02-01 The microstructures of six stacking-faulted industrially produced cobalt- and aluminium-bearing nickel layered double hydroxide (LDH) samples that are used as precursors for Li(Ni1−x−yCoxAly)O2 battery materials were investigated. Shifts from the brucite-type (AγB)□(AγB)□ stacking pattern to the CdCl2-type (AγB)□(CβA)□(BαC)□ and the CrOOH-type (BγA)□(AβC)□(CαB)□ stacking order, as well as random intercalation of water molecules and carbonate ions, were found to be the main features of the microstructures. A recursive routine for generating and averaging supercells of stacking-faulted layered substances implemented in the TOPAS software was used to calculate diffraction patterns of the LDH phases as a function of the degree of faulting and to refine them against the measured diffraction data. The microstructures of the precursor materials were described by a model containing three parameters: transition probabilities for generating CdCl2-type and CrOOH-type faults and a transition probability for the random intercalation of water/carbonate layers. Automated series of simulations and refinements were performed, in which the transition probabilities were modified incrementally and thus the microstructures optimized by a grid search. All samples were found to exhibit the same fraction of CdCl2-type and CrOOH-type stacking faults, which indicates that they have identical Ni, Co and Al contents. Different degrees of interstratification faulting were determined, which could be correlated to different heights of intercalation-water-related mass-loss steps in the thermal analyses. Full Article text
lit In meso crystallogenesis. Compatibility of the lipid cubic phase with the synthetic digitonin analogue, glyco-diosgenin By scripts.iucr.org Published On :: 2020-03-25 Digitonin has long been used as a mild detergent for extracting proteins from membranes for structure and function studies. As supplied commercially, digitonin is inhomogeneous and requires lengthy pre-treatment for reliable downstream use. Glyco-diosgenin (GDN) is a recently introduced synthetic surfactant with features that mimic digitonin. It is available in homogeneously pure form. GDN is proving to be a useful detergent, particularly in the area of single-particle cryo-electron microscopic studies of membrane integral proteins. With a view to using it as a detergent for crystallization trials by the in meso or lipid cubic phase method, it was important to establish the carrying capacity of the cubic mesophase for GDN. This was quantified in the current study using small-angle X-ray scattering for mesophase identification and phase microstructure characterization as a function of temperature and GDN concentration. The data show that the lipid cubic phase formed by hydrated monoolein tolerates GDN to concentrations orders of magnitude in excess of those used for membrane protein studies. Thus, having GDN in a typical membrane protein preparation should not deter use of the in meso method for crystallogenesis. Full Article text
lit A study of the strain distribution by scanning X-ray diffraction on GaP/Si for III–V monolithic integration on silicon By journals.iucr.org Published On :: The distribution of plastic relaxation defects is studied using a nondestructive sub-micrometre X-ray diffraction scanning technique. Full Article text
lit Great Sichuan earthquake of 2008 had little impact on of China’s wild takins By insider.si.edu Published On :: Mon, 20 Sep 2010 15:27:51 +0000 Data from a recent study of wild takins in the high-altitude forests of the Tangjiahe National Nature Reserve in southeast China has shown that the […] The post Great Sichuan earthquake of 2008 had little impact on of China’s wild takins appeared first on Smithsonian Insider. Full Article Research News Science & Nature biodiversity endangered species mammals Smithsonian's National Zoo
lit Lemurs exhibit ability for social learning in zoo experiment By insider.si.edu Published On :: Thu, 20 Jan 2011 20:10:18 +0000 Subjects watched demonstrators for varying amounts of time. When given the pipe, each of the subjects in both groups opened the door on their first attempt using the method they had seen demonstrated. The post Lemurs exhibit ability for social learning in zoo experiment appeared first on Smithsonian Insider. Full Article Animals Anthropology Research News Science & Nature
lit Charles Doolittle Walcott (1850-1927) family campsite in the Canadian Rockies By insider.si.edu Published On :: Wed, 25 May 2011 13:25:26 +0000 Collecting trips for Charles Doolittle Walcott (1850-1927), paleontologist and fourth Secretary of the Smithsonian Institution, were often a family affair. This 1910 photograph shows their […] The post Charles Doolittle Walcott (1850-1927) family campsite in the Canadian Rockies appeared first on Smithsonian Insider. Full Article Dinosaurs & Fossils History & Culture Research News Science & Nature Spotlight National Museum of Natural History
lit Swift satellite alerts astronomers to cosmic accident in constellation Draco By insider.si.edu Published On :: Wed, 24 Aug 2011 18:03:04 +0000 Two studies appearing in the Aug. 25 issue of the journal Nature provide new insights into a cosmic accident that has been streaming X-rays toward Earth since late March. NASA's Swift satellite first alerted astronomers to intense and unusual high-energy flares from the new source in the constellation Draco. The post Swift satellite alerts astronomers to cosmic accident in constellation Draco appeared first on Smithsonian Insider. Full Article Science & Nature Space astronomy astrophysics Center for Astrophysics | Harvard & Smithsonian Smithsonian Astrophysical Observatory
lit Ability to raft with flotsam and use non-reef habitats helps tropical fish journey to new places, study finds By insider.si.edu Published On :: Tue, 20 Sep 2011 18:44:36 +0000 Depending on where the fish disperse from, the use of ‘stepping stones', flotsam or simply being an adult can help in the journey to find a new home. The post Ability to raft with flotsam and use non-reef habitats helps tropical fish journey to new places, study finds appeared first on Smithsonian Insider. Full Article Animals Marine Science Research News Science & Nature biodiversity conservation conservation biology endangered species fishes Tropical Research Institute
lit 5 rabbit realities By insider.si.edu Published On :: Fri, 06 Apr 2012 12:06:24 +0000 In celebration of the annual spring appearance of the Easter bunny on Sunday, April 8, Smithsonian Science offers these five facts from the book "Rabbits: The Animal Answer Guide" The post 5 rabbit realities appeared first on Smithsonian Insider. Full Article Animals Science & Nature mammals Smithsonian's National Zoo
lit Fungal fidelity: some ants have been eating the same meal for 5 million years! By insider.si.edu Published On :: Wed, 30 May 2012 12:49:40 +0000 Scientists have discovered an incredible story of fungal fidelity among certain species of ants. The post Fungal fidelity: some ants have been eating the same meal for 5 million years! appeared first on Smithsonian Insider. Full Article Animals Research News Science & Nature ants Ecuador fungi insects National Museum of Natural History prehistoric South America
lit Smithsonian Conservation Biology Institute and George Mason University dedicate new academic facilities in Front Royal, Va. By insider.si.edu Published On :: Fri, 19 Oct 2012 12:50:00 +0000 The Smithsonian-Mason School of Conservation, a unique program in terms of its academic offerings and contributions to the field of conservation, celebrated the completion of its expansive new academic facilities today, Oct. 18, at the Smithsonian Conservation Biology Institute in Front Royal, Va. The post Smithsonian Conservation Biology Institute and George Mason University dedicate new academic facilities in Front Royal, Va. appeared first on Smithsonian Insider. Full Article Animals Science & Nature amphibian biodiversity conservation conservation biology endangered species mammals Smithsonian Conservation Biology Institute Smithsonian's National Zoo veterinary medicine
lit Split-personality elliptical galaxy holds a hidden spiral By insider.si.edu Published On :: Thu, 25 Oct 2012 13:51:29 +0000 Astronomers have discovered that one well-known elliptical galaxy has a split personality. Centaurus A is hiding a gassy spiral in its center. The post Split-personality elliptical galaxy holds a hidden spiral appeared first on Smithsonian Insider. Full Article Science & Nature Space astronomy astrophysics Center for Astrophysics | Harvard & Smithsonian galaxies Smithsonian Astrophysical Observatory
lit Discovery of new prehistoric mosquitoes reveal these blood-suckers have changed little in 46 million years By insider.si.edu Published On :: Mon, 07 Jan 2013 18:08:19 +0000 Found in well preserved shale deposits the fossils are so detailed that scientists were able to determine they represent two previously unknown species. The post Discovery of new prehistoric mosquitoes reveal these blood-suckers have changed little in 46 million years appeared first on Smithsonian Insider. Full Article Dinosaurs & Fossils Science & Nature insects National Museum of Natural History new species
lit Cat’s Paw Nebula “littered” w/ baby stars By insider.si.edu Published On :: Thu, 06 Jun 2013 18:21:09 +0000 Most skygazers recognize the Orion Nebula, one of the closest stellar nurseries to Earth. Although it makes for great views in backyard telescopes, the Orion […] The post Cat’s Paw Nebula “littered” w/ baby stars appeared first on Smithsonian Insider. Full Article Research News Science & Nature Space astronomy astrophysics Center for Astrophysics | Harvard & Smithsonian Smithsonian Astrophysical Observatory supernova
lit Suburban raccoons more social yet dominance behavior remains that of a solitary animal By insider.si.edu Published On :: Tue, 30 Jul 2013 16:26:23 +0000 Rooting through the garbage for a late-night snack or stealing food from the cat’s bowl, the suburban raccoon is a nocturnal, intelligent animal. Yet life […] The post Suburban raccoons more social yet dominance behavior remains that of a solitary animal appeared first on Smithsonian Insider. Full Article Animals Research News Science & Nature conservation conservation biology mammals Tropical Research Institute veterinary medicine
lit Sprawl threatens water quality, climate protection, and land conservation in Massachusetts By insider.si.edu Published On :: Thu, 12 Dec 2013 16:44:29 +0000 A groundbreaking study by Harvard University’s Harvard Forest and the Smithsonian Conservation Biology Institute reveals that, if left unchecked, recent trends in the loss of […] The post Sprawl threatens water quality, climate protection, and land conservation in Massachusetts appeared first on Smithsonian Insider. Full Article Research News Science & Nature agriculture conservation biology
lit Quality of insect fossils from Montana’s Flathead River astounds scientists By insider.si.edu Published On :: Mon, 27 Jan 2014 17:53:30 +0000 Out in Montana’s Big Sky Country Dale Greenwalt spends his summers seeking the incredibly tiny and fragile. Armed with a putty knife honed razor-sharp on […] The post Quality of insect fossils from Montana’s Flathead River astounds scientists appeared first on Smithsonian Insider. Full Article Research News Science & Nature fossils insects
lit Baby bird study proves innate ability for midair maneuvers By insider.si.edu Published On :: Thu, 11 Sep 2014 18:25:29 +0000 How did the earliest birds take wing? Did they fall from trees and learn to flap their forelimbs to avoid crashing? Or did they run […] The post Baby bird study proves innate ability for midair maneuvers appeared first on Smithsonian Insider. Full Article Animals Research News Science & Nature animal flight birds Tropical Research Institute
lit Satellite tracking helps with curlew conservation By insider.si.edu Published On :: Fri, 15 May 2015 11:05:18 +0000 Ever heard the joke about flying in from Mexico, and boy, are my arms tired? Try telling that to the blackpoll warbler. Researchers recently tracked […] The post Satellite tracking helps with curlew conservation appeared first on Smithsonian Insider. Full Article Animals Marine Science Q & A Research News Science & Nature birds climate change conservation conservation biology endangered species Migratory Bird Center migratory birds Smithsonian Conservation Biology Institute Smithsonian's National Zoo technology
lit Trapped in Amber: Ancient fossils reveal remarkable stability of Caribbean lizard communities By insider.si.edu Published On :: Mon, 27 Jul 2015 19:05:55 +0000 Tiny Anolis lizards preserved since the Miocene in amber are giving scientists a true appreciation of the meaning of community stability. Dating back some 15 […] The post Trapped in Amber: Ancient fossils reveal remarkable stability of Caribbean lizard communities appeared first on Smithsonian Insider. Full Article Animals Dinosaurs & Fossils Marine Science Research News Science & Nature climate change extinction National Museum of Natural History new species prehistoric technology
lit Ghost octopod shows how little we know about deep-sea life By insider.si.edu Published On :: Tue, 08 Mar 2016 19:30:35 +0000 A social media celebrity was born last week when the bright lights and camera of NOAA’s remotely operated vehicle Deep Discoverer zoomed in on a […] The post Ghost octopod shows how little we know about deep-sea life appeared first on Smithsonian Insider. Full Article Animals Marine Science Q & A Research News Science & Nature biodiversity conservation biology fishes National Museum of Natural History
lit Making the Smithsonian’s New “Sidedoor” podcast series a reality By insider.si.edu Published On :: Wed, 26 Oct 2016 13:08:11 +0000 There’s something exciting and strange about having an idea. It can come suddenly. Unexpectedly. Randomly. Intensely. Ideas can uninvitingly appear full-forced and bright—like the cliché […] The post Making the Smithsonian’s New “Sidedoor” podcast series a reality appeared first on Smithsonian Insider. Full Article Art History & Culture Meet Our People Science & Nature
lit Tiny ocean crustaceans wear invisibility cloak of living bacteria By insider.si.edu Published On :: Fri, 28 Oct 2016 07:45:54 +0000 Crustaceans that thrive in the vastness of the open ocean have no place to hide from their predators. Consequently, many creatures that live at depths […] The post Tiny ocean crustaceans wear invisibility cloak of living bacteria appeared first on Smithsonian Insider. Full Article Animals History & Culture Marine Science Research News Science & Nature Spotlight National Museum of Natural History
lit Tool use by sea otters has little to do with genetic ties: Smithsonian study By insider.si.edu Published On :: Wed, 22 Mar 2017 18:41:33 +0000 Tool use by sea otters to break open well-armored food is not necessarily a family matter, according to a new study published this week by […] The post Tool use by sea otters has little to do with genetic ties: Smithsonian study appeared first on Smithsonian Insider. Full Article Animals Marine Science Research News Science & Nature Smithsonian Conservation Biology Institute Smithsonian's National Zoo
lit A new stellar X-ray “reality” show debuts By insider.si.edu Published On :: Mon, 27 Nov 2017 19:05:42 +0000 A new project using data from NASA’s Chandra X-ray Observatory and other telescopes allows people to navigate through real data of the remains of an […] The post A new stellar X-ray “reality” show debuts appeared first on Smithsonian Insider. Full Article Science & Nature Space Center for Astrophysics | Harvard & Smithsonian Chandra X-Ray Observatory
lit Structure of Thermococcus litoralis Δ1-pyrroline-2-carboxylate reductase in complex with NADH and l-proline By scripts.iucr.org Published On :: 2020-04-29 l-Hydroxyproline (l-Hyp) is a nonstandard amino acid that is present in certain proteins, in some antibiotics and in the cell-wall components of plants. l-Hyp is the product of the post-translational modification of protein prolines by prolyl hydroxylase enzymes, and the isomers trans-3-hydroxy-l-proline (T3LHyp) and trans-4-hydroxy-l-proline (T4LHyp) are major components of mammalian collagen. T4LHyp follows two distinct degradation pathways in bacteria and mammals, while T3LHyp is metabolized by a two-step metabolic pathway that is conserved in bacteria and mammals, which involves a T3LHyp dehydratase and a Δ1-pyrroline-2-carboxylate (Pyr2C) reductase. In order to shed light on the structure and catalysis of the enzyme involved in the second step of the T3LHyp degradation pathway, the crystal structure of Pyr2C reductase from the archaeon Thermococcus litoralis DSM 5473 complexed with NADH and l-proline is presented. The model allows the mapping of the residues involved in cofactor and product binding and represents a valid model for rationalizing the catalysis of Pyr2C reductases. Full Article text
lit CLIC4 is a cytokinetic cleavage furrow protein that regulates cortical cytoskeleton stability during cell division [RESEARCH ARTICLE] By jcs.biologists.org Published On :: 2020-03-17T03:51:28-07:00 Eric Peterman, Mindaugas Valius, and Rytis PrekerisDuring mitotic cell division, the actomyosin cytoskeleton undergoes several dynamic changes that play key roles in progression through mitosis. While the regulators of cytokinetic ring formation and contraction are well-established, proteins that regulate cortical stability during anaphase and telophase have been understudied. Here, we describe a role for CLIC4 in regulating actin and actin-regulators at the cortex and cytokinetic cleavage furrow during cytokinesis. We first describe CLIC4 as a new component of the cytokinetic cleavage furrow that is required for successful completion of mitotic cell division. We also demonstrate that CLIC4 regulates the remodeling of sub-plasma membrane actomyosin network within the furrow by recruiting MST4 kinase and regulating ezrin phosphorylation. This work identifies and characterizes new molecular players involved in regulating cortex stiffness and blebbing during late stages of cytokinetic furrowing. Full Article
lit Maturation and phenotype of pathophysiological neuronal excitability of human cells in tau-related dementia [RESEARCH ARTICLE] By jcs.biologists.org Published On :: 2020-04-16T06:39:33-07:00 Olga Kopach, Noemi Esteras, Selina Wray, Dmitri A. Rusakov, and Andrey Y. AbramovFrontotemporal dementia and parkinsonism (FTDP-17) caused by the 10+16 splice-site mutation in the MAPT provides an established platform to model tau-related dementia in vitro. Human iPSC-derived neurons have been shown to recapitulate the neurodevelopmental profile of tau pathology during in vitro corticogenesis as in the adult human brain. However, the neurophysiological phenotype of these cells has remained unknown, leaving unanswered questions over the functional relevance and the gnostic power of this disease model. Here we used electrophysiology to explore the membrane properties and intrinsic excitability of the generated neurons to find that human cells mature by ~150 days of neurogenesis to become compatible with matured cortical neurons. In earlier FTDP-17, neurons, however, exhibited a depolarized resting membrane potential associated with increased resistance and reduced voltage-gated Na+- and K+-channel-mediated conductance. The Nav1.6 protein was reduced in FTDP-17. These led to a reduced cell capability of induced firing and changed action potential waveform in FTDP-17. The revealed neuropathology may thus contribute to the clinicopathological profile of the disease. This sheds new light on the significance of human models of dementia in vitro. Full Article
lit Glittering, mesmerizing, lifesaving: Hospital exhibit showcases minerals used in medicine By insider.si.edu Published On :: Mon, 17 Oct 2016 16:51:14 +0000 Have an upset stomach? Pop a chalky, chewable antacid. Maybe you’ve got a painful cut or burn. No problem; reach for a healing ointment or […] The post Glittering, mesmerizing, lifesaving: Hospital exhibit showcases minerals used in medicine appeared first on Smithsonian Insider. Full Article Earth Science Science & Nature National Museum of Natural History
lit With the recent hatching of two Cuban crocodiles, the National Zoo just got a little snappier! By insider.si.edu Published On :: Wed, 25 Jul 2012 18:05:18 +0000 The post With the recent hatching of two Cuban crocodiles, the National Zoo just got a little snappier! appeared first on Smithsonian Insider. Full Article Animals Science & Nature Video conservation conservation biology crocodiles endangered species reptiles Smithsonian's National Zoo
lit Glimpse into the Smithsonian National Museum of Natural History’s new meteorite storage facility By insider.si.edu Published On :: Thu, 14 Feb 2013 15:03:50 +0000 Don your clean room clothing and take a glimpse into the Smithsonian's new Antarctic meteorite storage facility in Suitland, Md., where all of the Antarctic meteorites in the national collection are kept under tight security and tight airlocks. The post Glimpse into the Smithsonian National Museum of Natural History’s new meteorite storage facility appeared first on Smithsonian Insider. Full Article Space Video astronomy astrophysics meteorites National Museum of Natural History
lit Polar-orbiting satellite captures amazing X-ray footage of solar eclipse By insider.si.edu Published On :: Fri, 24 Oct 2014 16:25:30 +0000 The moon passed between the Earth and the sun on Thursday, Oct. 23. While avid stargazers in North America looked up to watch the spectacle, the […] The post Polar-orbiting satellite captures amazing X-ray footage of solar eclipse appeared first on Smithsonian Insider. Full Article Q & A Science & Nature Space Video astronomy Smithsonian Astrophysical Observatory solar eclipse