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The Biodiversity Data Journal goes beyond the basics of the Gold Open Access

There are two main modes of open access publishing – Green Open Access, where the author has the right to provide free access to the article outside the publisher's web site in a repository or on his/her own website, and Gold Open Access, where articles are available for free download directly from the publisher on the day of publication.

Opening of content and data, however does not necessarily mean "easy to discover and re-use". The Biodiversity Data Journal proposed the term "Advanced Open Access" to describe an integrated, narrative (text) and data publishing model where the main goal is to make content "re-usable" and "interoperable" for both humans and computers.

To publish effectively in open access, it is not sufficient simply to provide PDF or HTML files online. It is crucial to put these under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested and collated into a big data pool.

The Advanced Open Access means:

• Free to read
• Free to re-use, revise, remix, redistribute
• Easy to discover and harvest
• Content automatically summarised by aggregators
• Data and narrative integrated to the widest extent possible
• Human- and computer-readable formats
• Community-based, pre- and post-publication peer-review
• Community ownership of data
• Free to publish or at low cost affordable by all

BDJ shortens the distance between "narrative" (text) and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets for better readability by humans. Conversely, text from an article can be downloaded as structured data or harvested by computers for further analysis.

"Open access is definitely one of the greatest steps in scientific communication comparable to the invention of the printing technology or the peer-review system. Great but not sufficient!" said Prof. Lyubomir Penev, founder of Pensoft Publishers and the Biodiversity Data Journal. "We need to switch the focus already from making content 'available for free download' to being discoverable and extractable. Such re-usability multiplies society's investment in science".

Additional information:

The Biodiversity Data Journal is designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

Source: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

A new EU BON acknowledged paper "Advancing species diversity estimate by remotely sensed proxies: A conceptual review" has been recently published in the journal Ecological Informatics.

Abstract: 

Many geospatial tools have been advocated in spatial ecology to estimate biodiversity and its changes over space and time. Such information is essential in designing effective strategies for biodiversity conservation and management. Remote sensing is one of the most powerful approaches to identify biodiversity hotspots and predict changes in species composition in reduced time and costs. This is because, with respect to field-based methods, it allows to derive complete spatial coverages of the Earth surface under study in a short period of time. Furthermore, remote sensing provides repeated coverages of field sites, thus making studies of temporal changes in biodiversity possible. In this paper we discuss, from a conceptual point of view, the potential of remote sensing in estimating biodiversity using various diversity indices, including alpha- and beta-diversity measurements.

Original Source: 

Rocchini D, Hernández-Stefanoni J L, He KS (2014) Advancing species diversity estimate by remotely sensed proxies: A conceptual review. Ecological Informatics. DOI: 10.1016/j.ecoinf.2014.10.006

The Shepherdess and the Seven Songs (2020). Since David’s death, this blog has not been updated. I do, however, plan to occasionally re-post old entries if they become relevant to current events in the world of film. I also hope to post new entries as the inspiration strikes me. This entry deals with Mohammad Rasoulof’s […]

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The following pieces are very much my personal choice of music from this great composer. There are many other astonishing pieces that Beethoven composed that ... Read more

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President Trump has been determined that the migrant caravan not be allowed to enter the US. Now his administration has extended the deployment of more than 5,000 troops on the US-Mexico border to the end of January, 2019. Many of the migrants are now waiting in the Mexican border town of Tijuana for a chance to seek asylum in the US. We find out what life is like for them.

Also: A group of gay and transgender migrants find safety in numbers as they wait to seek asylum in the US; we find out how the US government is using biometric data to gather intelligence on members of the migrant caravan; we hear the story behind the now-iconic photo of a mother and her two daughters running away from tear gas on the US-Mexico border; also we learn about the tiny American town where tear gas is big business; Plus, Pulitzer Prize winning journalist Sonia Nazario shares her thoughts about possible solutions to the Central American migrant crisis.

(Central American migrants rest after being relocated to a new temporary shelter in east Tijuana, Mexico. Credit: Guillermo Arias/Getty Images)

Vladi was just 15 years old when he joined a migrant caravan, travelling all the way from El Salvador, to Tijuana on the US-Mexico border. He arrived there last autumn with his grandmother. But by November, Vladi, was on his own. His grandmother needed to return to El Salvador, and Vladi remained at a youth shelter for other unaccompanied migrants like him. Many were hoping to seek asylum in the United States. So was Vladi. But ahead of them is the hostility of the Trump administration. The story of one family in America’s migrant crisis.

(Vladi, center, is from El Salvador. He says the gangs try to recruit you when you turn 14 or 15. He's 15. He says instead of joining a gang, he joined the migrant "caravan" headed toward the United States. Credit: Erin Siegal McIntyre/Frontline)

As the 2020 presidential campaign in America heats up, evangelical Christians will be getting more and more attention in the US news media. They always do during election season as they have long been seen as reliable Republican voters. But people who identify as evangelical or born-again Christians are more than just a voting bloc. Evangelicals make up a huge swath of the US population and they are rapidly becoming more diverse than ever before.

(Jason Petty is shown on stage performing under his spoken word artist and rapper name, Propaganda. Credit: Matthew Bell/The World)

The former New England wedding singer won her “Battle” on Monday night’s episode — and will now also get help from Sting.

The post Snoop Dogg picks Mass. native Mary McAvoy to advance on ‘The Voice’ appeared first on Boston.com.

There are very clear lines drawn for a Black person in White evangelical spaces that are not often addressed. Speaking openly about these realities can be hopeful, yet tricky and difficult; however, the call, for me, is very missional and fully aligns with the ministry of the disciples after Christs’ commissioning. I don't speak for all Black people who operate in these spaces, but I believe that my experiences and relationships, coupled with the research I've conducted in this area, allow me to bring a broad perspective to certain realities surrounding this subject matter.

(Note that when I refer to evangelical churches, I'm referring to predominantly white churches, thus the exclusion of the language, engagement with black churches and vernacular used within the Black church.)

I, like many of my Black friends, fall in love with the new language, liturgies and sermon content occupied by the evangelical church. In modern evangelical churches, there is great pride in the authority of Scripture, accurate hermeneutics and appropriate exegesis of Scripture. At times, there are historical facts and liturgies presented that are not always found in Black churches. When I began attending and working at my first evangelical church, this new language and preaching style became very attractive to me. I felt my love for this new experience grow as I continued to learn. Consequently, to my detriment, I grew further away from my own culture. I started to feel that everything I loved about church, while growing up in the Black church, was a lie. For a short season, I grew bitter, hurt and angry with the Black church because I felt they kept from me the truths and historical facts that I began learning in the evangelical church. My frustration with the specific lens through which the church communicated and the lifestyle that was promoted grew as well. Boy, was I wrong. As I gained more influence within the [evangelical] church and increased my knowledge and understanding of God, I started seeing the gaps in my church, and the church as a whole. I later enrolled in seminary and it changed my life. I will never forget watching a sermon by Dr. Tony Evans where he stated that he was one of only four Black’s to attend the Dallas Theological Seminary in the 1980’s, and that those four were some of the first to attend in DTS history. I found this information inexcusable and devastating, and it affirmed what I've known my entire life - Black churches were not holding anything back from me; they didn't have access to the same information as their white counterparts. This realization began shifting my view of my culture and my Black church experience. The idea of Black people not being able to attend “accredited” seminaries until the nineteen-eighties became a real issue and tension for me. It also brought a greater appreciation for the Black church and its ability to have such powerful services and accurate sermon content. This reflects the narrative of not only the church, but our dearest America. 

Many of us grew up being taught that America was built so that equality for all human beings could be attained. We have a certain historical view of Christianity; however, if we take a closer look at history, we'll learn that many of our brothers and sisters failed us in this regard. The tricky part that comes with this is diving deep into motives while highlighting the gaps within not only the country, but the evangelical church. The church, historically, segregated congregations based on preferences. To this day, churches continue to segregate, and have zero conviction about it. Many white evangelical churches adhere and fully affirm the work of Martin Luther and the Reformation while also ignoring the ramifications of this movement. While I believe Luther’s work was great and indeed needed during sixteenth century, I do, however, realize that many evangelicals overlook the other parts of Luther. We often think of Luther as the great catalyst of the Reformation, the re-discoverer of the doctrine of justification by faith and the one who stood up to a corrupt Roman Catholic Church, but we fail to acknowledge his overlook on the importance of reconciliation and the equality of all mankind. Condemnation, bondage and hierarchy were prevalent then and because it was not addressed during the Reformation period, it damaged, and continues to damage many people. The language of the Reformation and Luther's work is exclusively used in evangelical churches.

This highlights not only a historical tension, but the difficulties that come with it. There is no denying the good in Luther's work; however, it's made the journey of forward progression more challenging. The difficult challenge and frustration that I find hard for many of my white friends to grasp, is the need to repent for their beliefs and inattentional blindness acquired while growing up. Inattentional blindness, as Walter Bruggerman states, is known as perceptual blindness. It's due to a lack of attention that is not associated with any vision defects or deficits. In other words, it means missing or negating to perceive what is right in front of you. Working in white spaces and getting white people to see the oppression they cause, theologically, is quite difficult. Many evangelicals, if they're being honest, approach oppression as Black employers would call a 'misnomer.' They often negate the real pain and frustration that Black's endure because they choose to be colorblind and fail to see hierarchy and white supremacy as a great cause for concern. As a result, tensions arise at some point with Black’s who grew up in different denominations or church environments. Although, this may not always be the case for those who grew up in suburban white culture and those adopted into a white family. 

Despite having affirmation from peers, congregants and certain church leaders, I was viewed as a liability because of my theology prior to working in the evangelical church. All that I attained while growing up in the Black church would ultimately keep me from excelling higher within the evangelical church. By limiting my role in leadership while still allowing me a certain level of influence, they'd do just enough to keep my voice quiet. This would, however, keep the church from ultimately becoming diverse. I began asking my church hard questions in an attempt to understand why they wanted to be diverse. I came to learn that my perception was accurate in that the church didn't want diversity in leadership; they only wanted it in certain areas like entertainment (worship) and family ministry - departments that were merely limited to freedoms of expression and custodial services. While many white parishioners would deny that this is their intention, I would argue that it is and point them to the term 'inattentional blindness.' Many say that there are systems in place to protect the unity of the church and that if someone disagrees, they should “seek God’s call elsewhere,” meanwhile, making this situation very difficult for Black’s who operate in White evangelical spaces as they live with these realities and tensions. To say that the gospel is inclusive and that you want diversity while failing to accept the culture within the Black people that are hired negates their perspectives, giftings and who they are in Christ. 

I want to send a message to my evangelical friends: It's important to remember that sound hermeneutics, appropriate exegesis and historical content is very subjective. I'm afraid that many evangelical churches explicitly view the interpretation of these principles as absolutes. To view these principles dualistically or as absolutes is not only dangerous, but quite damaging. Churches that practice communion should be reminded of its meaning, power and purpose - to unite and remind us all of the work of Christ. It's purpose is ultimately to bring us together. Diversity should not be viewed as a threat, but as a gift from God. Moreover, there needs to be a clear understanding that God has not given us all the same gift(s). I believe that Black's do more than add value to diversity and that Black culture itself is indeed diverse. Black people and culture are embedded in every continent, and this is not only our nature -- it's our gift. As Black people, we are a strong race that knows how to persevere, and there are many things that can be learned from us. It's important that we, the church, reject the notion that black people are a threat, unable to be trusted in leadership; a lie that America taught us. I recently held a conversation at my house with a diverse group of friends who came together to talk about these very things. Many of them were surprised by the stories shared by Black people who felt discouraged and faced the same challenges I endured while working at a White church. That night, we all encouraged each other. We rebuked anger, frustration and hurt. We broke bread together to be reminded of our union. It's time for us all to seek the kingdom and stop building our city. It's time for us to stop feeling threatened by different perspectives and start embracing the gifts that are all essential to a healthy body. It's time to truly embrace our duty to love. 

Who are you really?

I had a moment recently when I had to ask myself what God was telling ME to do. Me! Not what He was telling others to do, or telling others to tell me to do, but what was He telling ME to do. And, once He told me, would I be willing to go through with it? Would I have that moment of obedience and run as hard and fast toward it as I could? I mean, who am I really? What if I do it wrong? Was that really Him talking to lil ol’ me? Hmmmm, maybe I should just walk out what I’ve been told and hope this whole “God’s Kingdom” thing works out in the end…

It’s a tough realization that could easily send you into a spiritual spiral, but don’t lose heart. This is ALL a good thing. I think it was best revealed to me when I realized the difference between sonship and servanthood.

Servants (or slaves) are always concerned about what they should be doing for their master. Naturally. But there are questions that come along with it, like whether they are doing what they are supposed to? Are they being validated by whoever is in charge? Did they make a mistake and now there’ll be punishment? FOR THE LOVE OF MARY, WILL I EVER GET A MICROPHONE?? Ok, that last one just slipped out. My bad. Now, I’m not saying serving is a bad thing. No way. There are countless verses in scripture about serving, but this kind of  thinking can cause our responses to be different in regards to the master.

Sonship is different. Especially Kingdom sonship. You see, sons and daughters can also serve, and they should, but it’s with a different mindset. A son or daughter has a legacy, an inheritance. They always feel free to chase their dreams and passions knowing what they possess and how it reflects on their family. They internally become the thing they know they are and they always want the best for this Kingdom and its people. They are always in constant communication with their father at any time. They have full confidence to run as hard as they can toward their goal, and in turn, the Father always backs them up! They can choose to pursue and they have the full backing of their heritage. No asking permission to run faster or harder than anyone else. They just do. With confidence.

Our heavenly Father generally knows what’s best for His kids. So, there may be some steering here and there. But know that true sons and daughters will always be honorable and become who they are meant to be. Whether they become doctors, lawyers, car salesmen, missionaries or pastors, the Father will always be pleased as long as we continue to stay in relationship with Him and His Kingdom. So we don’t have to fear the consequences of chasing too hard or too fast. Sons and daughters don’t get that luxury.

This is important to us as we walk out our relationship with the Father. What Father wouldn’t want his kids to be all they can be, and more importantly, become all they SHOULD be.

So in Christ Jesus you are all children of God through faith ~ Galatians 3:26

How President Trump might be alienating his strongest supporters.

When Dan Bellamy was preparing for a missions trip to Jamaica during his senior year of high school, he was introduced to the art of balloon sculpting. He was only going to pick up a few tricks from his instructor (a professional clown), but soon the student surpassed the teacher and a new interest and eventual career in ministry was born. "I had no expectations of making it more than a hobby during college or long after college. You know, it crossed my mind during seminary, but I never really...

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Diversified Fall Protection has appointed Gabe Galvan as EBM design director. Galvan will play a key role in leveraging the company’s newly acquired California Scaffold Inspection and Testing license. This license permits DFP to offer inspection, testing and design services related to exterior building maintenance and other equipment within California.

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