sign

Bayesian Design of Experiments for Intractable Likelihood Models Using Coupled Auxiliary Models and Multivariate Emulation

Antony Overstall, James McGree.

Source: Bayesian Analysis, Volume 15, Number 1, 103--131.

Abstract:
A Bayesian design is given by maximising an expected utility over a design space. The utility is chosen to represent the aim of the experiment and its expectation is taken with respect to all unknowns: responses, parameters and/or models. Although straightforward in principle, there are several challenges to finding Bayesian designs in practice. Firstly, the utility and expected utility are rarely available in closed form and require approximation. Secondly, the design space can be of high-dimensionality. In the case of intractable likelihood models, these problems are compounded by the fact that the likelihood function, whose evaluation is required to approximate the expected utility, is not available in closed form. A strategy is proposed to find Bayesian designs for intractable likelihood models. It relies on the development of an automatic, auxiliary modelling approach, using multivariate Gaussian process emulators, to approximate the likelihood function. This is then combined with a copula-based approach to approximate the marginal likelihood (a quantity commonly required to evaluate many utility functions). These approximations are demonstrated on examples of stochastic process models involving experimental aims of both parameter estimation and model comparison.




sign

Control of Type I Error Rates in Bayesian Sequential Designs

Haolun Shi, Guosheng Yin.

Source: Bayesian Analysis, Volume 14, Number 2, 399--425.

Abstract:
Bayesian approaches to phase II clinical trial designs are usually based on the posterior distribution of the parameter of interest and calibration of certain threshold for decision making. If the posterior probability is computed and assessed in a sequential manner, the design may involve the problem of multiplicity, which, however, is often a neglected aspect in Bayesian trial designs. To effectively maintain the overall type I error rate, we propose solutions to the problem of multiplicity for Bayesian sequential designs and, in particular, the determination of the cutoff boundaries for the posterior probabilities. We present both theoretical and numerical methods for finding the optimal posterior probability boundaries with $alpha$ -spending functions that mimic those of the frequentist group sequential designs. The theoretical approach is based on the asymptotic properties of the posterior probability, which establishes a connection between the Bayesian trial design and the frequentist group sequential method. The numerical approach uses a sandwich-type searching algorithm, which immensely reduces the computational burden. We apply least-square fitting to find the $alpha$ -spending function closest to the target. We discuss the application of our method to single-arm and double-arm cases with binary and normal endpoints, respectively, and provide a real trial example for each case.




sign

We thank you for not smoking / design : Biman Mullick.

London (33 Stillness Rd, London, SE23 1NG) : Cleanair, Campaign for a Smoke-free Environment, [198-?]




sign

If you must smoke don't exhale / design : Biman Mullick.

London (33 Stillness Rd, London, SE23 1NG) : Cleanair, Campaign for a Smoke-free Environment, [198-?]




sign

Be nice to yourself and others / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Cleanair not smoke / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

No smoking zone / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Heart burn. / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Smoking is anti-social / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Tapadh leibh airson nach do smoc sibh / design : Biman Mullick.

London (33 Stillness Rd, SE23 1NG) : Cleanair, Campaign for a Smoke-free Environment, [198-?]




sign

No smoking is the norm / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

We thank you for not smoking / design : Biman Mullick.

London (33 Stillness Rd, London, SE23 1NG) : Cleanair, Campaign for a Smoke-free Environment, [198-?]




sign

No smoking zone / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

We thank you for not smoking / design : Biman Mullick.

London (33 Stillness Rd, London, SE23 1NG) : Cleanair, Campaign for a Smoke-free Environment, [198-?]




sign

No smoking is the norm / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Be nice to yourself and others / design : Biman Mullick.

London : Cleanair, Smoke-free Environment (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

दिल की जलन। = Heart burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [1989?]




sign

Dila jalana = Heart burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Hārtabarna = Heart burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Ha gubin wadnahaaga! = Heart burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Hārta jbalē = Heart burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Heat burn. / design : Biman Mullick.

London : Cleanair (33 Stillness Rd, London, SE23 1NG), [198-?]




sign

Tapadh leibh airson nach do smoc sibh / design: Biman Mullick.

London (33 Stillness Road London SE23 1NG) : Cleanair Campaign for a Smoke-free Environment, [198-?]




sign

Cleanair posters to create a smoke-free environment / designed by Biman Mullick ; published by Cleanair.

London (33 Stillness Road, London SE23 ING) : Cleanair, [198-?]




sign

Smoking is bad for your image / design : Biman Mullick.

[London?], [199-?]




sign

Cancer / design : Biman Mullick.

[London?], 6th November 1989.




sign

Bisher Dhoa = Bāśāra dhōyā / design : Biman Mullick.

London, 26 January 2003.




sign

[Silhouette of a pregant woman smoking with death skull inside womb, 29 January 1994] / design: Biman Mullick.

London, [29 January 1994]




sign

Significant Neuroanatomical Variation Among Domestic Dog Breeds

Erin E. Hecht
Sep 25, 2019; 39:7748-7758
BehavioralSystemsCognitive




sign

Correction: Sequerra, Goyal et al., "NMDA Receptor Signaling Is Important for Neural Tube Formation and for Preventing Antiepileptic Drug-Induced Neural Tube Defects"




sign

Neighbourhood : designing a liveable community

Friedman, Avi, 1952- author.
9781550654981 (paperback)




sign

6 Signs You May Be Ready for a CRM Switch

In today's evolving business environment, every operational decision is critical -- and that includes best practices for managing the customer journey. The CRM platform is an integral part of the process. In fact, 91 percent of companies with more than 11 employees use a CRM system. Because of the time it saves and the structure CRM delivers, it can seem daunting for businesses to make a switch.




sign

Nitric Oxide Signaling Strengthens Inhibitory Synapses of Cerebellar Molecular Layer Interneurons through a GABARAP-Dependent Mechanism

Nitric oxide (NO) is an important signaling molecule that fulfills diverse functional roles as a neurotransmitter or diffusible second messenger in the developing and adult CNS. Although the impact of NO on different behaviors such as movement, sleep, learning, and memory has been well documented, the identity of its molecular and cellular targets is still an area of ongoing investigation. Here, we identify a novel role for NO in strengthening inhibitory GABAA receptor-mediated transmission in molecular layer interneurons of the mouse cerebellum. NO levels are elevated by the activity of neuronal NO synthase (nNOS) following Ca2+ entry through extrasynaptic NMDA-type ionotropic glutamate receptors (NMDARs). NO activates protein kinase G with the subsequent production of cGMP, which prompts the stimulation of NADPH oxidase and protein kinase C (PKC). The activation of PKC promotes the selective strengthening of α3-containing GABAARs synapses through a GABA receptor-associated protein-dependent mechanism. Given the widespread but cell type-specific expression of the NMDAR/nNOS complex in the mammalian brain, our data suggest that NMDARs may uniquely strengthen inhibitory GABAergic transmission in these cells through a novel NO-mediated pathway.

SIGNIFICANCE STATEMENT Long-term changes in the efficacy of GABAergic transmission is mediated by multiple presynaptic and postsynaptic mechanisms. A prominent pathway involves crosstalk between excitatory and inhibitory synapses whereby Ca2+-entering through postsynaptic NMDARs promotes the recruitment and strengthening of GABAA receptor synapses via Ca2+/calmodulin-dependent protein kinase II. Although Ca2+ transport by NMDARs is also tightly coupled to nNOS activity and NO production, it has yet to be determined whether this pathway affects inhibitory synapses. Here, we show that activation of NMDARs trigger a NO-dependent pathway that strengthens inhibitory GABAergic synapses of cerebellar molecular layer interneurons. Given the widespread expression of NMDARs and nNOS in the mammalian brain, we speculate that NO control of GABAergic synapse efficacy may be more widespread than has been appreciated.




sign

The Correlation of Neuronal Signals with Behavior at Different Levels of Visual Cortex and Their Relative Reliability for Behavioral Decisions

Behavior can be guided by neuronal activity in visual, auditory, or somatosensory cerebral cortex, depending on task requirements. In contrast to this flexible access of cortical signals, several observations suggest that behaviors depend more on neurons in later areas of visual cortex than those in earlier areas, although neurons in earlier areas would provide more reliable signals for many tasks. We recorded from neurons in different levels of visual cortex of 2 male rhesus monkeys while the animals did a visual discrimination task and examined trial-to-trial correlations between neuronal and behavioral responses. These correlations became stronger in primary visual cortex as neuronal signals in that area became more reliable relative to the other areas. The results suggest that the mechanisms that read signals from cortex might access any cortical area depending on the relative value of those signals for the task at hand.

SIGNIFICANCE STATEMENT Information is encoded by the action potentials of neurons in various cortical areas in a hierarchical manner such that increasingly complex stimulus features are encoded in successive stages. The brain must extract information from the response of appropriate neurons to drive optimal behavior. A widely held view of this decoding process is that the brain relies on the output of later cortical areas to make decisions, although neurons in earlier areas can provide more reliable signals. We examined correlations between perceptual decisions and the responses of neurons in different levels of monkey visual cortex. The results suggest that the brain may access signals in any cortical area depending on the relative value of those signals for the task at hand.




sign

Molecular Mechanisms of Non-ionotropic NMDA Receptor Signaling in Dendritic Spine Shrinkage

Structural plasticity of dendritic spines is a key component of the refinement of synaptic connections during learning. Recent studies highlight a novel role for the NMDA receptor (NMDAR), independent of ion flow, in driving spine shrinkage and LTD. Yet little is known about the molecular mechanisms that link conformational changes in the NMDAR to changes in spine size and synaptic strength. Here, using two-photon glutamate uncaging to induce plasticity at individual dendritic spines on hippocampal CA1 neurons from mice and rats of both sexes, we demonstrate that p38 MAPK is generally required downstream of non-ionotropic NMDAR signaling to drive both spine shrinkage and LTD. In a series of pharmacological and molecular genetic experiments, we identify key components of the non-ionotropic NMDAR signaling pathway driving dendritic spine shrinkage, including the interaction between NOS1AP (nitric oxide synthase 1 adaptor protein) and neuronal nitric oxide synthase (nNOS), nNOS enzymatic activity, activation of MK2 (MAPK-activated protein kinase 2) and cofilin, and signaling through CaMKII. Our results represent a large step forward in delineating the molecular mechanisms of non-ionotropic NMDAR signaling that can drive shrinkage and elimination of dendritic spines during synaptic plasticity.

SIGNIFICANCE STATEMENT Signaling through the NMDA receptor (NMDAR) is vitally important for the synaptic plasticity that underlies learning. Recent studies highlight a novel role for the NMDAR, independent of ion flow, in driving synaptic weakening and dendritic spine shrinkage during synaptic plasticity. Here, we delineate several key components of the molecular pathway that links conformational signaling through the NMDAR to dendritic spine shrinkage during synaptic plasticity.




sign

Sign up to receive FAO's publications newsletters

To keep up to date on FAO’s most recent publications, sign up to one of the newsletters produced by the Publications team of the Office for Corporate Communication:


sign

7 Signs of Chirst's Return




sign

Supreme Court allows AK recall signatures




sign

As Face Mask Supply Dwindles, Fashion Designers Offer Their Assistance

In New York City, a desperate need among healthcare workers has pushed to the forefront the question: Is homemade equipment safe to use?




sign

How COVID-19 Could Inform the Future of Hospital Design

Modified hospital designs have become necessary as the first wave of the pandemic tears through U.S. communities




sign

Designing Floating Buildings With an Eye to the Marine Species Living Underneath

A prototype deployed in San Francisco Bay imagines the underside of a floating building as an upside-down artificial reef




sign

How Susan Kare Designed User-Friendly Icons for the First Macintosh

The graphic designer is receiving a Lifetime Achievement Award from Cooper Hewitt for her recognizable computer icons, typefaces and graphics




sign

Basel Committee invites comments on the design of a prudential treatment for crypto-assets

Press release: Basel Committee invites comments on the design of a prudential treatment for crypto-assets, 12 December 2019.




sign

COVID-19 precautions keep sign-making businesses busy in P.E.I.

Sign makers in P.E.I. have been busy since the province announced its plans to ease back COVID-19 restrictions, as businesses are ordering signs and decals ahead of reopening.



  • News/Canada/PEI

sign

Alphonso Davies signs new deal with Bayern Munich through 2025

Bayern Munich has secured Canadian soccer star Alphonso Davies for another two years through June 2025, with club officials and the teenager donning surgical masks to ink the deal during the global pandemic.




sign

Los Angeles Rams sign former CFL all-star kicker Lirim Hajrullahu

Former CFL kicker Lirim Hajrullahu signed with the NFL's Los Angeles Rams on Monday to potentially replace veteran Greg Zuerlein.



  • Sports/Football/NFL

sign

Patriots not drafting QB after Brady departure 'wasn't by design', says Belichick

New England head coach Bill Belichick said not taking a quarterback in the Patriots' first post-Tom Brady draft "wasn't by design."



  • Sports/Football/NFL

sign

Cowboys sign QB Andy Dalton to 1-year, $7M deal

Andy Dalton is coming home to Texas as Dak Prescott's backup with the Dallas Cowboys.



  • Sports/Football/NFL

sign

Turmeric spice and a sporty life inspire B.C. designers

Kevin Khungay played high school basketball. His friend's older brother Sunny Basran was his coach. Years later, their unique designs are worn by some of the sports biggest stars.



  • News/Canada/British Columbia

sign

Bruins sign pending free agent Jaroslav Halak to 1-year deal

Boston Bruins goaltender Jaroslav Halak signed a one-year contract worth $2.25 million US, the team announced Friday. He was playing in the final season of a two-year contract.



  • Sports/Hockey/NHL