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Manuscript at the click of a button: Streamlined conversion of metadata for GBIF and DataONE into scholarly manuscripts

Data collection and analysis are at the core of modern research, and often take months or even years during which researchers remain uncredited for their contribution. A new plugin to a workflow previously developed by the Global Biodiversity Information Facility (GBIF) and Pensoft, and tested with datasets shared through GBIF and DataONE, now makes it possible to convert metadata into a manuscript for scholarly publications, with a click of a button.

Pensoft has currently implemented the feature for biodiversity, ecological and environmental data. Such records are either published through GBIF or deposited at DataONE, from where the associated metadata can be converted directly into data paper manuscripts within the ARPHA Writing Tool, where the authors may edit and finalize it in collaboration with co-authors and peers and submit it to the Biodiversity Data Journal (BDJ) with another click. Until now, the GBIF metadata have been exported into an RTF file. The new feature will be also part of future Pensoft projects, including the recently announced Research Ideas & Outcomes (RIO) Journaland the forthcoming Ecology and Sustainability Data Journal.

Metadata can be directly downloaded from the repository site (example with ONEMercury from DataONE) and then imported via the ARPHA Writing tool; Credit: ONEMercury, a tool by DataONE

The concept of the data paper was introduced in the early 2000's by the Ecological Society of America in order to solve issues of handling big data and to make the metadata and the corresponding datasets discoverable and citable. It was then brought to the attention of the biodiversity community in 2011 as a result of a joint GBIF and Pensoft project and later implemented in the routine publishing process in all Pensoft journals.

Since then, Pensoft has been working with GBIF, and subsequently DataONE to automate the process of converting metadata into a human-readable data paper format. The novel workflow means that with only a couple of clicks, publishers of datasets on either GBIF, DataONE or any other portal storing metadata in the same format, may submit a manuscript for peer-review and open access citable publication in BDJ.

The process is simple, yet it brings a lot of benefits. Publishing data does not only mean a citable publication and, thus, credit to the authors and the repository itself, but it also provides the option to improve your work and collect opinion though peer-review. BDJ also shortens the distance between "narrative (text)" and "data" publishing.

"Metadata descriptions (e.g., data about the data) are of primary importance for data dissemination, sharing and re-use, as they give essential information on content, scope, purpose, fitness for use, authorship, usage rights, etc. to any potential user. Authoring detailed metadata in repositories can seem a tedious process, however DataONE users will now benefit from direct export of already created metadata into data paper manuscripts and have even better exposure of their work through discoverability mechanisms and scholarly citations," commented Dr Amber Budden, DataONE Director for Community Engagement and Outreach

"It is great to reap the fruits of a process that started back in 2010. The automated streamlining of biodiversity data between repositories and publisher is an elegant feature that makes publishing a data paper an easy and rewarding process to crown scientists data collection efforts and ensure its use and re-use," added Prof. Lyubomir Penev, Managing Director of Pensoft.

More detailed information on how data authors could use the workflow can be found on the Pensoft blog.

References:

Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics. 12(Suppl 15):S2. DOI: 10.1186/1471-2105-12-S15-S2

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

 





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Interview: Clint Alibrandi from REDIAM on the benefits of an European Biodiversity Portal

One of the main outputs of EU BON will be the establishment of an European Biodiversity Portal based on data collected and compiled from a variety of sources including earth observations but also observations and monitoring data from (local) sites. One of the main points of this portal is to serve as a substantial building block of a global biodiversity portal planned by the Group of Earth Observations project GEO BON.

But how will this portal be useful to stakeholders on a more local level - for example for people involved in questions connected to biodiversity across European regions? What will be the real benefits of it for biodiversity monitoring and conservation? Just a couple of weeks after the Third EU BON Stakeholder Round Table in Granada, Spain, Mr Clint Alibrandi from REDIAM (Environment and Water Agency in Andalusia) gives us his views on these questions.


Picture:  Excursion to Sierra Nevada.; Credit: Katrin Vohland

Q: REDIAM shares a mission with EU BON in its attempt to collect, standardize and distribute available biodiversity data. What will be the expected benefits and challenges in the process of making this type of datasets available for society and environmental policy?

A: Among the responsibilities of the Regional Environmental Government of Andalusia are promoting Social Environmental Awareness, Managing a vast, diverse and very complex territory, Control and Mitigate any threats posed to the fragile ecosystems present in our region as well as all the responsibilities derived from the management and planning of the existing natural resources.

Considering these facts, it is necessary to be able to account for the best environmental information available. Since the early 80’s the Regional Environmental Government of Andalusia has been working on its Environmental Information System with the purpose of generating, compiling, standardizing and analyzing Environmental Information covering topics such as Climate, Water, Air Quality and Biodiversity by means of ICTs. This the REDIAM. The name comes from the Spanish Acronym "REd De Información AMbiental de Andalucía" which means the Environmental Information Network of Andalusia. It serves as a Unified Regional Environmental Information Registry.

From this effort, the information obtained by the REDIAM is made publicly available to be then employed in Decision Making processes and Management Planning on behalf of the Administrations, for Dissemination and Awareness as well as for Research purposes.

As such, it is of vital importance for the REDIAM to be able to account for updated and verifiable Information and Data Sources and this is what we consider to be the most important benefit on behalf of EU BON, as it will offer the possibility to have a higher level reference covering a larger perspective, allowing stakeholders, be it either from a local, regional or national level, to consult or work with data, tools and have reference to relevant policies concerning Biodiversity on the European scale in order to be able to better transpose them to a more local context.

Yet the greatest challenge we believe that EU BON might come to face is the fact that the different contexts that exist over the whole European territory make it very difficult to tailor tools and information formats which can cover the different priorities or needs that exist in the diverse makeup of stakeholders that exist from a local, regional and national perspective. The same can most probably apply to the feedback, queries or requests made to EU BON on behalf of the stakeholder and user community. It is never easy to reach a common base level and from the regional perspective, REDIAM has faced the same type of situations.

Q: What type of stakeholders do you hope to engage through your network - who is using your data and for what purposes?

A: The stakeholders which are currently engaged with the REDIAM consist in Universities, Research Centres, Public Bodies, Local Administrations, Private Companies just to name a few examples. There are over 150 organizations which are partners of the REDIAM, they provide relevant Environmental Information to the REDIAM and are responsible for updating the information.

And as can be expected,the information provided is as diverse as the makeup of stakeholders that are part of the REDIAM, with the following formats being made available: Cartography, Satellites Images, Databases, Reports, Statistics, Applications, Management Plans and Programmes, Orthophotos, Indicators, Studies.

Additionally the REDIAM offers the user community different alternatives in order to access the previously indicated information. The REDIAM Channel is a web portal with a Catalogue and Information Search System, OGC Services, Query and Viewer tools, Downloader. The user community is able to access its information and services. This community consists in Citizens, Universities, Public Administrations and Companies from the Public and Private Sector.

Q: Where do you see the cross section between REDIAM’s work and EU BON - what are the products from EU BON and other European projects that would be helpful for the work that you are doing?

A: The REDIAM has great interest in the following issues and we believe that EU BON would be up to the task of providing solutions and/or guidelines on how to be able to proceed to solve them:

  • The elaboration of a common tool for the description and localization of species throughout the European Territory. This can prove a very useful service for Environmental Impact Assessments by providing a more complete view on different species distribution on determined area.
  • Defining a standardized list of species which contains the taxonomically correct name for each one of them. EU BON could serve as a base reference to set guidelines for standardizing the taxonomical classification of species.
  • Support and guidance in defining specific biodiversity indicators as proposed by EUROSTAT, a methodological and assessment guide of some sort.

Q: In your opinion what are the three greatest benefits of a European level biodiversity portal?

A: 1) Offering an opportunity of Standardizing and Harmonizing Biodiversity related information. We all speak the same "language" when referring to Biodiversity, but it is necessary that we all be able to follow the same "rules" as well. This is the first and most important pillar we believe that a European level Biodiversity portal can bring into play.

2) It would allow for and facilitate a widespread exchange of information amongst stakeholders throughout the whole European Territory.

3) And finally, it would allow a common analysis on a European level which would provide a general assessment on how different efforts and policies are effective, value which is the real status of Biodiversity and/or specific species independently from the limit of administrative or country borders.

About REDIAM:

The Environmental Information Network REDIAM has onboard experts from the Regional Ministry of Environment in Andalusia and its Water and Environmental Agency. With a team expertise ranging from local to regional and European level and from technical know-how to regional and thematic assessment, the main aim of the network is to integrate all spatially-referenced biodiversity data produced in Andalusia. Raw data are used to generate knowledge and improve its distribution, making it accessible and comprehensible for the general public.





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EEA Report: Climate change, impacts and vulnerability in Europe 2016

Europe’s regions are facing rising sea levels and more extreme weather, such as more frequent and more intense heatwaves, flooding, droughts and storms due to climate change, according to the latest European Environment Agency report published on 25 Jan 2017. The report assesses the latest trends and projections on climate change and its impacts across Europe and finds that better and more flexible adaptation strategies, policies and measures will be crucial to lessen these impacts.

Find a summary of the report's Key Findings, or download the full report.





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SUSTAIN-EU-ASEAN cluster meting: organic and non-organic resourches & climate actions and cities

SUSTAIN-EU-ASEAN organises the first bi-regional cluster meeting during which projects from both Southeast Asia and Europe can meet in person! This cluster meeting will take place in Bogor, Indonesia on 19 Aug 2014, in parallel with the ASEAN Science and Technology Week (ASTW). The two tematic clusters are:
  • Climate Action and Cities: this cluster brings together a number of projects dealing with the effects of climate change on urban space (also referring to issues like water management, etc.)
  • Organic and Non-Organic Resources: this cluster contains projects that deal with a range of resources and materials problems crucial for economic and social well-being in Southeast Asia
Purpose of the meeting/Goals:
 
  • Meet and get to know fellow projects working on similar topics of relevance to ASEAN
  • Discuss results and synergies, exchange on methodologies, plan for joint events, applications, publications, etc. or simply see what's going on in the other region in this topic.
  • Plan concrete next joint steps with projects in the cluster.
  • Benefit from SUSTAIN EU-ASEAN support (e.g. in your dissemination, exploitation and development activities) and inputs (on the funding environment)
  • Share your views on thematic gaps in current research - SUSTAIN is mandated to carry the message to the European Commission
Find more information in the attached brochure.

 

 





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Nature-based Solutions to Climate Change in Urban Areas and their Rural Surroundings: Linkages between science, policy and practice

The Europena Conference "Nature-based Solutions to Climate Change  in Urban Areas and their Rural Surroundings: Linkages between science, policy and practice" will take place from 17 to 19 November 2015 in Bonn, Germany.

The event is a joint European Conference held by the German Federal Agency for Nature Conservation (BfN) and the European Network of Heads of Nature Conservation Agencies (ENCA) in co-operation with the Helmholtz Centre for Environmental Research (UFZ) / German Centre for Integrative Biodiversity Research (iDiv).

Climate change has significant impact on society and biodiversity in Europe. Urban inhabitants are most likely to experience climate change effects directly because currently 73 per cent of Europeans live in urban areas. Here, management of urban ecosystems offer sustainable and cost-effective solutions to climate change mitigation and adaptation while contributing to human well-being.

This European conference will bring together experts from science, policy and practice to highlight and debate the importance of nature-based solutions to climate change in urban areas and their rural surroundings. Emphasize is given to the potential of nature-based approaches to create multiple-benefits.

The conference is divided into three main areas (day 1: science, day 2: practice and implementation, day 3: policy and business), each of which will be opened by keynote speakers including:

  • Hans Bruyninckx (Executive Director European Environmental Agency, EEA)
  • Wilhelm Krull (Chair of the H2020 expert group on nature-based solutions and re-naturing cities, Secretary General Volkswagen Foundation)
  • Georgina Mace (University College London – UCL, Director of Centre for Biodiversity and Environment Research)
  • Christine Wamsler (Lund University, Centre for Sustainability Studies)
  • Nataša Jazbinšek (Head of Department for Environmental Protection City of Ljubljana and Head of working group for European Green Capital programme 2016)
  • Wolfgang Teubner (ICLEI Regional Director for Europe)
  • Kurt Vandenberghe (Director for Climate action and resource efficiency at the European Commission's Directorate-General for Research and Innovation)
  • Chantal van Ham (IUCN – EU Programme Manager Nature Based Solutions)
  • Dirk Sijmons (Delft University of Technology)

Keynote speeches are complemented by plenary presentations given by leading experts in the fields of urban biodiversity, climate change, and socio-economic effects of nature-based solutions, interactive sessions and a poster exhibition.

Deadline for abstract submission is 24 July 2015 (abstract submission guidelines)

Registration:

Early bird registration deadline: 18 September 2015

Final registration deadline: 30 October 2015

For more information and to register please visit: http://www.ecbcc2015.com/





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UNFCCC Climate Summit

The UNFCCC Climate Summit will take place between 30 November and 11 December 2015 in Paris, France.

The event will include: UNFCCC COP 21/ CMP 11 - Twenty-first session of the Conference of the Parties and the eleventh session of the Conference of the Parties serving as the meeting of the Parties to the Kyoto Protocol

More information will be available closer to the dates at: http://unfccc.int/meetings/unfccc_calendar/items/2655.php





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CLIMBER: Climatic niche characteristics of the butterflies in Europe




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Predicting the future effectiveness of protected areas for bird conservation in Mediterranean ecosystems under climate change and novel fire regime scenarios





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Earlier breeding, lower success: does the spatial scale of climatic conditions matter in a migratory passerine bird?





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Unstructured citizen science data fail to detect long-term population declines of common birds in Denmark




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Cross-realm assessment of climate change impacts on species’ abundance trends






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The Eclipse Edition

On Monday, a total solar eclipse will cross 14 states from Oregon to South Carolina. We find out people all across the country are preparing.

Also: we meet an eclipse chaser traveling to the US from Australia; we speak to a cloistered nun who has been getting calls from concerned Catholics worried about the end of times; we learn what solar eclipses have revealed to us about our universe throughout the ages; plus how a new technology can help blind people experience the coming eclipse as well.

(Image: Solar Eclipse related items are offered for sale in Hopkinsville, Kentucky. Hopkinsville is located near the point of greatest totality for the August 21 eclipse. Credit: Scott Olson/Getty Images)




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White Sox decline $25 million option on Yoán Moncada, $7.5 million option on Max Stassi

Chicago set the post-1900 record for losses in a season, going 41-121.




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Writing the Climate Change Story

One of the toughest things about trying to understand climate change – arguably the most important story of our time - is wrapping our minds around it. To even imagine something so enormous, so life-changing, we need a story. Some characters, a metaphor, and even some lessons learned. For that, we turn to the novelists and journalists telling the story of climate change – as we – and our children – live it.

Original Air Date: August 14, 2021

Guests:

Alice BellLydia MilletLidia YuknavitchJohn Lanchester

Interviews In This Hour:

The Climate Change Stories We Need To HearThe Climate Crisis Gets BiblicalLidia Yuknavitch’s Dream World: How Dreams Shaped Her Dazzling Speculative Novel A Climate Dystopia Of Cold, Concrete, Wind and a Wall




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Tim Rogan: Insulations for a Changing Climate

Perhaps there’s more money in saving our resources than there is to burn them up recklessly for profit as we have done throughout time.




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Developing an Industry Standard for Scrap Board Recycling

The Gypsum Association and its member companies are committed to sustainability, and now, our industry is embracing another opportunity to contribute to a greener world.




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Recycling Gypsum

Gypsum board recycling in the country: Who, what, where and how.




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The Right Material For Any Climate

The Wall You Install Will Need To Be Able To Stand Up To Various Climate Challenges, So How Do You Choose Materials That Guarantee High Performance?




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Climate Action




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Knight Wall Systems and SpecLink Partner on Cladding Support Systems Spec Section

Knight Wall Systems announced Jan. 25 that it has partnered with design software development company RIB to create a new specification section for cladding support systems within RIB’s SpecLink building specification platform.




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Third Sector Awards 2019: Best Use of Impact Reporting - Clic Sargent

Awarded to the charity or social enterprise that has placed outcomes, rather than outputs, at the heart of its work and used impact reporting to bring about significant improvements to its beneficiaries




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Clic Sargent's impact report: the difficult second album

The youth cancer charity's report drew praise from around the sector last year, but it left it with a challenge: how to make it even better




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Third Sector Awards 2019: Fundraising Team of the Year - Clic Sargent

Awarded to a fundraising team that has worked effectively together to achieve or exceed its fundraising targets




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Data shows police officer gun, traffic deaths decline in first half of 2013

Washington – U.S. law enforcement deaths in the first half of 2013 increased slightly from the previous year, but decreases occurred in firearms- and traffic-related deaths, according to preliminary data released July 11 by the National Law Enforcement Officers Memorial Fund.




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Toolkit aimed at curbing health decline among correctional workers

Lowell, MA — Noting that corrections officers have an average life expectancy that’s 16 years less than other occupational groups, the Center for the Promotion of Health in the New England Workplace has created a mentoring toolkit aimed at combating a decline in health early in correctional workers’ careers.




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Washington L&I issues hazard alert on metal tank recycling

Tumwater, WA – The Washington State Department of Labor & Industries has released a hazard alert warning of the dangers of exploding tanks during metal recycling.




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Goggle clip

The Goggle Guard clip is a fast and convenient way to keep safety goggles secure on a hard hat.




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Workers’ comp costs climb as heat index rises: report

Raleigh, NC — The longer the heat index remains above 90° F, the more employers may pay in workers’ compensation costs for missed workdays, a recent study of North Carolina workers shows.




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Panasonic Finds Treasure in Recycling

As a manufacturer headquartered in an island nation, Panasonic is keenly aware of the burden that is placed on the environment and the responsibility that every individual and corporation must assume in stewarding its health and preservation.




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How to Test Clients’ Wi-Fi & Internet Capacities

Dave Engebretson tests a variety of Wi-Fi access points to see their performance




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Study links physical stress on the job to cognitive decline, memory loss later in life

Fort Collins, CO — Physically demanding work may lead to poor memory and faster aging of the brain among older adults, results of a recent study led by researchers from Colorado State University show.




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How to Write Copy That Converts Clients

Here are actionable tips and strategies for crafting compelling copy that attracts and converts clients in the ever-competitive security industry.




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Glove clip

The Utility Guard Glove Clip features a patented safety breakaway and has a proven record of reducing hand injuries and glove loss.




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10th Annual Top Systems Integrators Report: Continuing the Climb

Touched by an improved economy in most regions and some expenditure of Homeland Security funds, seven in 10 firms reported in the 10th annual SDM Top Systems Integrators Report




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Injury rates among recycling workers are twice national average: report

Berkeley, CA – Recycling industry employees face “unnecessarily hazardous” conditions on the job, but those conditions can be improved, according to a report released June 23.




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Needlestick injuries common in trash and recycling facilities: report

Raleigh, NC — An estimated 781 to 1,484 needlestick-related injuries – a rate of 2.7 per 100 workers – occur annually at solid waste and recycling material recovery facilities, according to a recent report from the Environmental Research and Education Foundation and the Solid Waste Association of North America.




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Sanitation worker safety still a concern for SWANA despite ‘small decline’ in deaths

Silver Spring, MD — At least 53 sanitation workers in the United States (44) and Canada (nine) died from on-the-job injuries in 2019 – a 10.2% decrease from 2018, according to a recent analysis from the Solid Waste Association of North America.




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Electric vehicles: Safety agency, auto group offer guidance for towing, recovery and recycling workers

Richmond, British Columbia — New safety guidelines from WorkSafeBC and Canada’s Automotive Retailers Association are intended to protect workers from shock-, fire- and fume-related hazards associated with electric vehicles and the high-voltage lithium-ion batteries that power them.




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Sanitation worker deaths climbed sharply in 2022, industry association says

Silver Spring, MD — At least 46 sanitation workers in the United States and Canada died from on-the-job injuries last year – a 64.3% increase from 2021, a recent analysis shows.




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Waste and recycling workers lack training on infection prevention: study

Ann Arbor, MI — Despite being regularly exposed to biohazards, fewer than 3 in 10 solid waste and recycling workers receive training on infection prevention, results of a recent study show.




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Gas Clip Technologies

The Multi Gas Clip Infrared Portable Gas Detector for LEL, H2S, CO and O2 runs for two months straight without recharging, and only requires calibration once a year. It uses advanced low-power infrared sensor technology. The IR LEL sensor is immune to H2S and silicone poisoning, and doesn't require oxygen to detect gases.

Click here for more information from Gas Clip Technologies




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Outdoor workers are more likely to experience traumatic injuries as temps climb: study

Corvallis, OR — When temperatures rise, so do the rates of traumatic injuries among outdoor workers, according to the results of a recent Oregon State University study.




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BLS: Fatal work injuries, rate declined in 2012

Washington – The number of fatal workplace injuries decreased in 2012 from the previous year, according to a preliminary report released Aug. 22 by the Bureau of Labor Statistics.




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BLS preliminary data shows decline in workplace deaths in 2013

Washington – The number and rate of workers killed on the job in 2013 declined from 2012, according to preliminary data released Sept. 11 by the Bureau of Labor Statistics.




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Nonfatal injury and illness rate in private sector continues to decline: BLS

Washington – The nonfatal injury and illness rate for private-sector U.S. employees decreased slightly in 2016 – as did the rate of nonfatal occupational injuries and illnesses requiring days away from work – according to data released Nov. 9 by the Bureau of Labor Statistics.




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Eagle Eye Deploys Custom Cloud Video Solution for SportClips

National retail hair care franchise Sport Clips Haircuts partnered with Eagle Eye Networks reseller Blue Iron Sentinel for a custom cloud video security solution across its 80 company-owned U.S. locations.




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FACEValue: Tower climbers killed when cell tower collapses; firefighter dies in rescue attempt

On the day of the incident, two tower climbers were killed when a 340-foot cellular tower collapsed during upgrading and construction activities.




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The Clinic: How Psychologically Insecure Atheists Comfort Themselves - Part 1