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Bayesian Sparse Multivariate Regression with Asymmetric Nonlocal Priors for Microbiome Data Analysis

Kurtis Shuler, Marilou Sison-Mangus, Juhee Lee.

Source: Bayesian Analysis, Volume 15, Number 2, 559--578.

Abstract:
We propose a Bayesian sparse multivariate regression method to model the relationship between microbe abundance and environmental factors for microbiome data. We model abundance counts of operational taxonomic units (OTUs) with a negative binomial distribution and relate covariates to the counts through regression. Extending conventional nonlocal priors, we construct asymmetric nonlocal priors for regression coefficients to efficiently identify relevant covariates and their effect directions. We build a hierarchical model to facilitate pooling of information across OTUs that produces parsimonious results with improved accuracy. We present simulation studies that compare variable selection performance under the proposed model to those under Bayesian sparse regression models with asymmetric and symmetric local priors and two frequentist models. The simulations show the proposed model identifies important covariates and yields coefficient estimates with favorable accuracy compared with the alternatives. The proposed model is applied to analyze an ocean microbiome dataset collected over time to study the association of harmful algal bloom conditions with microbial communities.




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A Kernel Regression Procedure in the 3D Shape Space with an Application to Online Sales of Children’s Wear

Gregorio Quintana-Ortí, Amelia Simó.

Source: Statistical Science, Volume 34, Number 2, 236--252.

Abstract:
This paper is focused on kernel regression when the response variable is the shape of a 3D object represented by a configuration matrix of landmarks. Regression methods on this shape space are not trivial because this space has a complex finite-dimensional Riemannian manifold structure (non-Euclidean). Papers about it are scarce in the literature, the majority of them are restricted to the case of a single explanatory variable, and many of them are based on the approximated tangent space. In this paper, there are several methodological innovations. The first one is the adaptation of the general method for kernel regression analysis in manifold-valued data to the three-dimensional case of Kendall’s shape space. The second one is its generalization to the multivariate case and the addressing of the curse-of-dimensionality problem. Finally, we propose bootstrap confidence intervals for prediction. A simulation study is carried out to check the goodness of the procedure, and a comparison with a current approach is performed. Then, it is applied to a 3D database obtained from an anthropometric survey of the Spanish child population with a potential application to online sales of children’s wear.




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This is the Only Jacket I’ll Be Living in This Winter

Canada Goose has long been a leader in the outdoor gear space.




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Academy launches online events programme




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Far-Right Spreads COVID-19 Disinformation Epidemic Online

Far-right groups and individuals in the United States are exploiting the COVID-19 pandemic to promote disinformation, hate, extremism and authoritarianism. "COVID-19 has been seized by far-right groups as an opportunity to call for extreme violence," states a report from ISD, based on a combination of natural language processing, network analysis and ethnographic online research.




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Art at Jineit goes online!




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Download the free “Quinoa in the kitchen” book and try out new recipes!

Once known as “the gold of the Incas,” quinoa has been one of the world’s neglected crops but is currently becoming more and more popular. For centuries, quinoa remained a hidden treasure grown almost exclusively by indigenous communities in the Andean heights. Lately, quinoa has been growing in popularity with foodies and health-conscious consumers around the world. It was even [...]




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Blue growth - unlocking the potential of seas and oceans

Today’s fisheries sector hosts a multibillion dollar industry that is a vital source of food and nutrition, employment, trade, economic wellbeing and recreation. What is blue growth? The concept of a "blue economy" came out of the 2012 Rio+20 Conference and emphasizes conservation and sustainable management, based on the premise that healthy ocean ecosystems are more productive and a must for sustainable [...]




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FAO online tools provide COVID-19 policy advice

The COVID-19 pandemic is currently one of the world’s most pressing issues and one that is increasingly shaping government policies. To help provide policy support and information to member [...]




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Visit the Only Village Inside the Grand Canyon

Supai is so remote, mail is delivered by mule train




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AMHS work group: Members will provide Dunleavy direction on AMHS




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http://digg.com/submit?url=http://www.edge.org/conversation/science-is-the-only-news




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Poland's Only Cat Museum Puts Couple's Private Collection of Trinkets on Display

The pint-sized institution, which opened last year, is filled with 1,000 feline-themed knickknacks that journeyed with their owners from Ukraine




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68 Cultural, Historical and Scientific Collections You Can Explore Online

Tour world-class museums, read historic cookbooks, browse interactive maps and more




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Archaeologists Reveal the Hidden Horrors of Only Nazi SS Camp on British Soil

New research details the first forensic investigation of the Sylt concentration camp, located on the Channel Island of Alderney, since the end of WWII




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The Museum of Modern Art Now Offers Free Online Classes

The nine classes span contemporary art, fashion and photography




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You Can Now Download 1.9 Million Free Images From the British Museum

The London institution's online offerings include 280,000 newly added Creative Commons images




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The Best Places for Your Kids to Learn Real-Life Skills Online

Why not use quarantine as an opportunity to have your homeschoolers master woodworking or engine repair?




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When the Stanley Cup Final Was Canceled Because of a Pandemic

In 1919, a second wave of cases of the previous year's flu lead to the sudden death of the hockey championship




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Six Online Courses About Europe to Take Before You Can Safely Travel There Again

Sheltering in place doesn’t mean you can’t study up for your next European adventure




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These Ancient Stone Troughs Contained an Unlikely Beverage




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Yukon campgrounds to open in June — but only to Yukoners

Yukon officials say the territory's campgrounds will open to campers on June 4, but the territory's borders will remain closed. They also issued guidelines for some health care services to reopen.



  • News/Canada/North

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Launching of the Mauritian Cybercrime Online Reporting System (MAUCORS) and Cyber Drill for Top Management

The Computer Emergency Response Team of Mauritius (CERT-MU) organised the launching ceremony for the Mauritian Cybercrime Online Reporting System (MAUCORS) and a Cyber Drill for Top Management in collaboration with the International Telecommunication Union (ITU) at Le Meridien Hotel on Thursday 15th March 2018. The Mauritian Cybercrime Online Reporting System (MAUCORS) was officially launched by Honourable Yogida Sawmynaden, Minister of Technology, Communication & Innovation. This system will help to coordinate and resolve social media incidents efficiently. This system has been developed by the CERT-MU and is one of the key initiative under the newly drafted Cybercrime Strategy that sets out the Government’s approach to combat cybercrime in Mauritius. The cyber drill for top management was also officially opened by Honourable Yogida Sawmynaden, Minister of Technology, Communication & Innovation on the same day. Professor Dr. Marco Gercke conducted the cyber drill for top management of organisations. The objective of this drill was to demonstrate the top executives to assess organizations’ preparedness to resist cyber threats and enable timely detection, response, and mitigation and recovery actions in the event of cyber-attacks. The launching ceremony was attended by around 70 participants and the cyber drill was attended by 55 participants.




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Comment on Bebo doesn’t fancy Liz Taylor! by onlinepromoter.info

<span class="topsy_trackback_comment"><span class="topsy_twitter_username"><span class="topsy_trackback_content">Bebo doesn't fancy Liz Taylor! | RSS Feeds – IMC OnAir, India ...: May not do Madhur Bhandarkar's film which appar... http://bit.ly/9btJW3</span></span>




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Comment on Triggers – Sub Swara (FREE DOWNLOAD) by IMCRadio.Net

<span class="topsy_trackback_comment"><span class="topsy_twitter_username"><span class="topsy_trackback_content"></span></span>




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Comment on Justin Bieber ignores online bullying by Shane Skillen

<span class="topsy_trackback_comment"><span class="topsy_twitter_username"><span class="topsy_trackback_content">Justin Bieber ignores online bullying | RSS Feeds – IMC OnAir ...: Teen sensation Justin Bieber is used to get bul... http://bit.ly/c455Kn</span></span>




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Cherry Blossoms Available in Print and Online

Every year Washingtonians are treated to a feast for the eyes as ornamental cherry trees bloom across the city, most prominently by the Tidal Basin. As cherry blossom season approaches, we would like to share information about two related resources that we hope will offer some inspiration for those near and far: a selected set […]




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Enterprise Hub-online seminar: Leadership and remote working during COVID-19




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No pomp, under the circumstances: CBU holding online convocation

What would have been Cape Breton University's largest convocation to date is being replaced by an online offering this year because of COVID-19. Some graduating students say it just won't be the same as a traditional ceremony.



  • News/Canada/Nova Scotia

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The urban boundary debate is vitally important, so should it happen online?

The upcoming debate about whether to expand the urban boundary is one of the city's big issues this term. But instead of delaying it, the city's testing out a never-before-attempted democratic process. Should they?



  • News/Canada/Ottawa

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Kurt Browning goes inline skating for front-line workers

The Canadian four-time world champion figure skater took part in the Americares Blades for the Brave fundraiser for front-line workers battling the COVID-19 pandemic.




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Scott Moir refutes online allegations of breaking quarantine guideline

Canadian figure skater Scott Moir posted a video on Instagram and Twitter on Thursday, explaining that he and fiancee Jackie Mascarin are currently stationed in Tampa, Fla., because Mascarin works as a physician's assistant in the respiratory unit of a local hospital.



  • Sports/Olympics/Winter Sports/Figure Skating

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India’s lavish weddings go online in virus lockdown – South China Morning Post

India's lavish weddings go online in virus lockdown  South China Morning Post



  • IMC News Feed

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Human Traffickers Continue to Use Popular Online Platforms to Recruit Victims




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Online Extortion Scams Increasing During The Covid-19 Crisis




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Champion Manitoba jigger launches online competition to spread joy amid pandemic

Acclaimed jigger Ryan Richard, from Sandy Bay First Nation, is calling all dancers to showcase their skills in an online jigging competition.



  • News/Canada/Manitoba

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Friendship first - Finland

OM Finland extends love and fellowship to immigrant mothers through friendship groups, open conversation and learning together.




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COVID-19 pandemic unleashing 'tsunami of hate,' says UN chief

UN Secretary General Antonio Guterres said Friday the coronavirus pandemic keeps unleashing "a tsunami of hate and xenophobia, scapegoating and scaremongering" and appealed for "an all-out effort to end hate speech globally."




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Drive-thru egg delivery and Sunday services online make remote Easter celebrations possible

As British Columbians maintain physical distancing recommendations during the COVID-19 pandemic, this year’s Easter celebrations will have to change. In Kamloops, B.C., organizations are working to make sure Easter is as fun and social as it can be. 



  • News/Canada/British Columbia

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Vaccine may be the only way sports return to full arenas

The coronavirus pandemic has forced major professional sports leagues across North America to push the pause button. But even if the NHL, CFL, NBA or MLS are given the green light, many fans have reservations about returning to arenas until a vaccine for the virus is available.




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Jennifer Jones was ready to pounce when Lisa Weagle suddenly became star free agent

The time was right for Lisa Weagle to join forces with Olympic champion Jennifer Jones. Jones told CBC Sports' Anastasia Bucsis that the latest addition to her five-person rink "was like the clouds parted and the sun came out."



  • Sports/Olympics/Winter Sports/Curling

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Monetary policy gradualism and the nonlinear effects of monetary shocks

Bank of Italy Working Papers by Luca Metelli, Filippo Natoli and Luca Rossi




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Penn State Mont Alto students recognized during online awards ceremony

The Penn State Mont Alto campus held its annual Academic and Leadership Awards Ceremony online on Sunday, April 19. Eighty-eight students were recognized for their academic achievements and campus leadership during the 2019-20 academic year. Three faculty members and one staff member were also recognized for their above-and-beyond contributions to the learning environment at Penn State Mont Alto.




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'Expanding Empathy' lecture series moves online

The 2020 "Expanding Empathy" lecture series has moved online and added a lecture on "The Altruistic Brain," as well as a panel discussion on empathy in the time of COVID-19, both to be held on April 29 via Zoom.




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Today only: Apple's 2019 15" MacBook Pro drops to $1,579 (up to $950 off)



In what are the lowest prices we've seen on Mid 2019 15-inch MacBook Pros, Amazon-owned Woot has refurbished units discounted to as low as $1,579.99, with savings of up to $950 off. These units are refurbished by Apple, but come with a 1-year Woot warranty.




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Apple launches new online storefront for buying from home



Apple has now launched a new shop front online which is expressly for making it easier to buy, and get technical help, from home.




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Standing room only

When OM Montenegro began in 2007 with a team of three, holding a full Sunday meeting seemed a long way off—but not anymore.




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Only for tough guys

Four OM guys in Bar, Montenegro, and four guys from a nearby Roma camp take a hiking/camping trip together.




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Activation Error message – SNL

Working with SOLIDWORKS on an SNL server, you can sometimes experience an Activation error message. Often these messages are not the same as the activation error messages you recieve when performing standalone activation What is SNL? SNL is short for

Author information

User success at PLM group

I started working with CAD systems in 2003, and have since 2012 worked solely with SOLIDWORKS. I am a certified Technical support specialist as well as a SOLIDWORKS Certified Professional and is currently in the process to become a SOLIDWORKS Certified Expert. Since 2016 I have helped PLM Group customers to work smarter, not harder.
The inspiration for most of my posts comes from the support cases i work on.
When writing blogpost I try to focus on the everyday use of SOLIDWORKS.

The post Activation Error message – SNL appeared first on SOLIDWORKS Tech Blog.




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SOLIDWORKS 2019 SP5 is available for download

Latest SOLIDWORKS press releases, news, technical alerts and announcements. These feeds are seen on...