pe New life for old data: Integrating and visualizing primary biodiversity data from prospective and legacy taxonomic literature By www.eubon.eu Published On :: Mon, 18 May 2015 15:38:00 +0300 XML markup of taxonomic research and specimen data is a valuable tool for structuring the incessantly accumulating biodiversity knowledge. It allows for the opportunity to collectively use the currently fragmented information for more detailed analysis. A new research paper, published in theBiodiversity Data Journal, demonstrates how XML markup using GoldenGATE can address the challenges presented by unstructured legacy data, like those presented in the widely used PDF format. The paper demonstrates how structured primary biodiversity data can be extracted from such legacy sources and aggregated with and jointly queried with data from other Darwin Core-compatible sources, to present a visualization of these data that can communicate key information contained in biodiversity literature. Specimen data in taxonomic literature are among the highest quality primary biodiversity data. Innovative cybertaxonomic journals such as the Biodiversity Data Journal are using workflows that preserve the data's structure and semantic specificity and disseminate electronic content to aggregators and other users that makes these data reusable. Such structure however is lost in traditional taxonomic publishing and currently, access to that resource is cumbersome, especially for non-specialist data consumers. The question is: how do you manage this vast distributed repository of knowledge about biodiversity to make it easily available reusable for future research? To answer this challenge this project queried XML structured articles published in Biodiversity Data Journal along with historical taxonomic literature marked up using GoldenGATE, and represents the results as a series of standard charts. XML structured documents are maintained by the Swiss NGO Plazi and are freely available online. In such form, data associated with specimens becomes much more valuable as it can reveal key information about a particular species, and even about the scientists who investigate them. Charts indicate at a glance, for example, what time of year and elevation range a species is likely to be found at, useful information if you want to search for it in the field. Our accumulated biodiversity knowledge includes an estimated 2-3 billion specimens in natural history collections and 500 million pages of printed text. These are the data we need to answer questions that are relevant to our world today, like setting conservation priorities and anticipating the effects of climate change on biodiversity and ecosystem functions that affect the lives of people. "In short, we have half a billion pages worth of biodiversity knowledge and are just learning how to query it. The real power comes when data from many articles are combined, queried, and reused for new purposes. Potential applications span the scientific, policy, and public spheres. When we all have better access to the information that already exists in the global corpus of biodiversity literature, this helps us do a better job of exploring what we don't know and wisely applying what we do." explains the lead author Dr Jeremy Miller, Naturalis Biodiversity Center. ### This project was supported by pro-iBiosphere and EU BON, two FP-7 (European Union Seventh Framework Programme, 2007-2013) grants (No 312848 and 308454). Original source: Miller J, Agosti D, Penev L, Sautter G, Georgiev T, Catapano T, Patterson D, King D, Pereira S, Vos R, Sierra S (2015) Integrating and visualizing primary data from prospective and legacy taxonomic literature. Biodiversity Data Journal 3: e5063. doi: 10.3897/BDJ.3.e5063 Full Article News
pe Conservation Biology Special Section: "Conservation in Europe as a model for emerging conservation issues globally By www.eubon.eu Published On :: Mon, 01 Jun 2015 15:06:00 +0300 A Special Section: "Conservation in Europe as a model for emerging conservation issues globally" is featured in the Early View module of Conservation Biology online. The section includes: Mapping opportunities and challenges for rewilding in Europe Silvia Ceaușu, Max Hofmann, Laetitia M. Navarro, Steve Carver, Peter H. Verburg and Henrique M. Pereira DOI: 10.1111/cobi.12533 Conservation in Europe as a model for emerging conservation issues globally Luigi Boitani and William J. Sutherland DOI: 10.1111/cobi.12530 The alignment of agricultural and nature conservation policies in the European Union Ian Hodge, Jennifer Hauck and Aletta Bonn DOI: 10.1111/cobi.12531 Scenarios of large mammal loss in Europe for the 21st century Carlo Rondinini and Piero Visconti DOI: 10.1111/cobi.12532 On how much biodiversity is covered in Europe by national protected areas and by the Natura 2000 network: insights from terrestrial vertebrates L. Maiorano, G. Amori, A. Montemaggiori, C. Rondinini, L. Santini, S. Saura and L. Boitani DOI: 10.1111/cobi.12535 The role of agri-environment schemes in conservation and environmental management Péter Batáry, Lynn V. Dicks, David Kleijn and William J. Sutherland DOI: 10.1111/cobi.12536 Framing the relationship between people and nature in the context of European conservation John D. C. Linnell, Petra Kaczensky, Ulrich Wotschikowsky, Nicolas Lescureux and Luigi Boitani DOI: 10.1111/cobi.12534 Full Article News
pe Climate Change & Biodiversity: What may happen to bony fishes in the North Sea? By www.eubon.eu Published On :: Tue, 02 Jun 2015 14:44:00 +0300 Sustainable governance of our biological resources demands reliable scientific knowledge to be accessible and applicable to the needs of society. To achieve this, the EU BON project aims to develop a European Biodiversity Observation Network that facilitates open access to biodiversity data of relevance to environmental policy, and to develop innovative platforms for sharing and conveying this information through visually effective and policy-relevant media. As part of this endeavour, EU BON partners FishBase Information and Research Group (FIN), the Museum für Naturkunde Berlin (MfN), and the UNEP World Conservation Monitoring Centre collaborated to produce an infographic titled ‘Climate Change & Biodiversity: What may happen to bony fishes in the North Sea?’. This infographic explains the economic and ecological importance of bony fishes in the context of the North Sea. It also visualises potential changes to species diversity and composition over time, using habitat suitability and climate change predictions. These changes have been projected to 2100 based on modelled environmental conditions under the Intergovernmental Panel on Climate Change’s A2 emissions scenarios. The projections have direct policy relevance to Aichi Biodiversity Target 10 of the Convention on Biological Diversity, which seeks to understand trends in climatic impacts on community composition in ecosystems, and to thereby minimize these impacts. The infographic was published on the 1st June 2015 on page 26 of The Parliament Magazine’s ‘Green Week’ edition (Issue 413), which is distributed to all members of European Parliament, the European Commission, Presidency Office, Party political groups, and various other EU institutions, with over 50,000 readers worldwide. Full Article News
pe EU BON General Meeting 2015: working toward building the European Biodiversity Observation Network By www.eubon.eu Published On :: Wed, 10 Jun 2015 18:35:00 +0300 The annual EU BON General Meeting was successfully held from 1 to 4 June 2015 at the Clare College Conferencing, Cambridge, United Kingdom. The meeting was attended by a total of 85 participants with various organizational background and relation to EU BON. Among these were almost all EU BON alongside representatives of eight associate partners and many guests. Participants at the EU BON General Meeting, 2015; Credit: Dirk Schmeller One of the highlights of the meeting was its very start with three inspiring keynote speakers. Among these, Bill Sutherland from the University of Cambridge started off to give an interesting speech about the progress and future plans on combining Biodiversity science and policy. Second was Gary Geller from the GEO secretariat who talked about GEO, GEOSS and GEO BON, its vision and goals. Later on, Johannes Peterseil from LTER-Europe shared some interesting thoughts about linking ecosystem research and earth observation through the cooperation between LTER-Europe and EU BON. During the meeting other relevant projects were also introduced to all participants. These were DataOne and Species 2000/Catalogue of Life and two new EU projects Ecopotential and Globis-B. The General Meeting included six thematic sessions on highly relevant EU BON topics, followed by many cross-task modules which led to better cooperation and communication between work packages and tasks. The exchange of experience gave new input to all work packages and set the milestones for the work ahead. Presentations from the meeting will be uploaded shortly. PRESENTATIONS: AGENDA - EU BON 3rd General Assembly Keynote speakers: W.Sutherland - Biodiversity science and policy G.Geller - GEO / GEOSS / GEOBON J.Peterseil - Linking ecosystem research and earth observation Other projects: B.Wilson - DataONE C.Flann - Species 2000 Catalogue of Life C.Marangi - Ecopotential W.Los - Globis-B EU BON presentations: C.Haeuser - EU BON core elements for an integrated biodiversity information system U.Koljalg - Data mobilization strategy and show case H.Saarenmaa - European biodiversity portal Y.Gavish - Developing EU BON's site-specific portal E.Regan - Stakeholder requirements I.Geijzendorffer - Context of EU BON Selection of pictures from the meeting: Full Article News
pe 9th GEO European Projects Workshop is on & streamlined live By www.eubon.eu Published On :: Mon, 15 Jun 2015 15:30:00 +0300 The 9th GEO European Projects Workshop is now taking place on 15 and 16 June 2015 in Copenhagen, co-organised by the Danish Meteorological Institute, the European Commission and the European Environment Agency. While registration is now closed, due to demand the event will be recorded and streamed live on http://stream.dvc.dk/9thgeo/ for those who are interested to follow. The objective of the GEO European Projects Workshop is to bring together European players interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS). The aim is to enable participants to present their work and discuss how Europe can contribute to this international effort. Its timing has been set to maximise early insight and awareness of the new Implementation plan for the next decade of GEO as well as input to and awareness of Horizon 2020 work programme for 2016 and 2017. Building on the experience from previous GEO European Projects Workshops, it is intended to continue working towards greater involvement of the European private sector, especially SMEs, in GEO. The workshop will also focus on user engagement, and the priorities for future flagship initiatives, foreseen to be strengthened in the next phase of GEO, in order to fulfil GEO's ambition to provide information for decision making. More information available on the official event page: http://geo.pbe.eionet.europa.eu/ Full Article News
pe European Environmental Agency (EEA) Annual Report 2014 By www.eubon.eu Published On :: Wed, 17 Jun 2015 17:16:00 +0300 The European Environmental Agency (EEA) has published its Annual Report describing the work carried out by the EEA in 2014. The EEA annual report includes the EMAS environmental statement 2014. The EEA aims to support sustainable development and to help achieve significant and measurable improvement in Europe's environment through the provision of timely, targeted, relevant and reliable information to policymaking agents and the public. Download the report here. Full Article News
pe EU BON presented in a special biodiversity and ecosystems session during the 9th GEO European Projects Workshop By www.eubon.eu Published On :: Fri, 19 Jun 2015 15:00:00 +0300 The 9th GEO European Projects Workshop took place on 15 and 16 June 2015, in Copenhagen, Denmark. A special session dedicated to biodiversity and ecosystems was held as a part of the meeting, where EU BON and other topic relevant projects were presented. The session was started by Gary Geller with an introduction and overview. Particularly the importance of the long-term sustainability of the projects and the linkages to the overall aims of GEO were stressed, as well as the opportunity of the session to find further synergies among the GEO-related projects. Participants at the biodiversity and ecosystems sessions during the 9th GEO European Projects Workshop; Credit: Florian Wetzel EU BON was presented at the meeting by the project coordinator Christoph Häuser, who outlined the core elements for an integrated biodiversity information system. There is the challenge to provide a sound framework to overcome the fragmentation of available biodiversity information to obtain better information for political decision making. EU BON with its 31 partners tackles this challenge and its main objective is to serve as a European contribution to GEO BON. Other projects presented during the session were EU H2020 projects ECOPOTENTIAL and GLOBIS‑B, both already in the list of associated partners of EU BON. The third H2020 project presented here was SWOS, a Satellite-based Wetland Observation Service. One of the major outcomes of the session was the agreement that further follow-ups of the discussions are needed and that the projects should have further exchange among each other. Full Article News
pe Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing By www.eubon.eu Published On :: Tue, 23 Jun 2015 10:58:00 +0300 A new EU BON acknowledging special issue "Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing" published in the open access journal Remote Sensing provides a collection of important researchers in the field, as well as the most challenging aspects of the application of remote sensing to study ecosystems. The special issue represents a stimulating discussion concerning innovative techniques/approaches that are based on remote sensing data, which are used for the study of ecosystems at different spatial and temporal scales. Research scientists and other subject matter experts submitted innovative and challenging papers that showed advances in several topics: - estimating the spatial distribution of plant species richness by Light Detection and Ranging (LiDAR) and hyperspectral data, - assessing habitat quality of forest corridor based on NDVI, - applying remote sensing to study (marine) coral ecosystems, - identifying ecosystem functional types, - distinguishing between different forest trunk size classes from remote sensing, - detecting changes in forest patterns, - applying light use efficiency models to estimate vegetation productivity, - classifying grassland successional stages by airborne hyperspectral images - proposing monitoring programs of grasslands based on multi-temporal optical and radar satellite images, - estimating the potential of remote sensing to capture field-based plants phenology. Original Source: Rocchini, D. (2015). Earth observation for ecosystems monitoring in space and time: a special issue in Remote Sensing. Remote Sensing, 7: 8102-8106. [IF: 3.180] [DOI | PDF] The full collection of papers can be found here:http://www.mdpi.com/journal/remotesensing/special_issues/ecosystemsmonitoring Full Article News
pe Future Directions for Scientific Advice in Europe - a book By www.eubon.eu Published On :: Wed, 01 Jul 2015 13:17:00 +0300 Future Directions for Scientific Advice in Europe was published in April 2015 and updated in June 2015 to take account of developments in the European Commission, focuses on scientific advice in Europe. In May 2014, the Centre for Science and Policy (CSaP) and the European Commission co-hosted a Brussels workshop on ‘New technologies and better evidence for EU policymaking’. One of its conclusions was the need to better connect the latest theory, policy and practice in this field. Building on an 2013 essay collection on Future Directions for Scientific Advice in Whitehall, a similar collection exploring the future of scientific advice at the European level was created. A free digital copy of and more information on Future Directions for Scientific Advice in Europe can be found here. Full Article News
pe 2016 GEO BON Open Science Conference: Biodiversity and ecosystem Services Monitoring for the 2020 Targets and beyond. Building on observations for user needs By www.eubon.eu Published On :: Wed, 15 Jul 2015 09:58:00 +0300 The 2016 GEO BON Open Science Conference: "Biodiversity and ecosystem Services Monitoring for the 2020 Targets and beyond. Building on observations for user needs" will take place from 4 to 9 July 2016 in Leipzig, Germany. Biodiversity Science is facing enormous challenges as the pressures upon the earth’s biotic systems are rapidly intensifying and we are unlikely to reach the CBD 2020 Aichi Targets. But how far or close are we to reach the targets? The GEO BON Open Science Conference on "Biodiversity and Ecosystem Services Monitoring for the 2020 Targets and beyond" will assess this question. The conference is open to the wide scientific public and is sponsored and co-organized by iDiv, UFZ, SASCAL (others to come). For more information please visit: http://conf2016.geobon.org Full Article News
pe New Paper: Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets. By www.eubon.eu Published On :: Tue, 21 Jul 2015 10:51:00 +0300 A new EU BON derived open access paper looking into Earth Observations (EO) and the Aichi Targets was recently published in the journal Remote Sensing in Ecology and Conservation. The paper reviews the ABTs and EBVs against direct and indirect, operational and emerging, EO data products. The review was conducted by consulting expert opinion and categorically rating the Targets based on the adequacy of currently available EO technology to build indicators per target. The potential RS-EBVs were also matched with their respective EO data products. To summarize this information a monitoring framework is proposed where RS-EBVs are used to harmonize observations prior to the indicator stage. Potential obstacles to implementing this framework and challenges to its adoption by the wider science and policy community are discussed. Finally, upcoming satellite missions which could offer potential for assessing global biodiversity status and trends beyond the 2020 timeframe of the CBD's current Strategic Plan for Biodiversity are discussed. Original Source: O'Connor B. et. al. (2015) Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets. Remote Sensing in Ecology and Conservation. DOI: 10.1002/rse2.4 Full Article News
pe Data Management in Citizen Science Projects: share your experience! By www.eubon.eu Published On :: Fri, 31 Jul 2015 17:45:00 +0300 It has been recognized that issues regarding the sustainability and interoperability of data collected by citizens hinder the re-usability and integration of these data across borders. The European Commission’s Joint Research Centre (JRC), is following up on these findings with a detailed study of interoperability arrangements, hosting and data management practices of Citizen Science projects. These activities include a survey designed to capture the state of play with regard to data management practices on the local, national and continental scales. The questions are especially inspired by the recently proposed data management principles of the Group on Earth Observations and those of the Belmont Forum. Beyond the pure stocktaking and awareness raising, the results should establish a base line for prioritizing follow-up activities and measuring progress. The results will also inform the discussion on the potential roles of the European Commission – and especially the JRC – in Citizen Science. After discussions with members of the European Citizen Science Association (ECSA) and the international Citizen Science Association (CSA), it was decided to open the scope of the questionnaire to the international community, so that non-EU and globally acting organizations could also benefit from the outcomes. The survey will be open until 31 August 2015, and the results of the subsequent analysis will be available by the end of September. We invite all those involved in Citizen Science projects to take the survey in order to provide us with invaluable information and insight into Citizen Science projects and best practice. Take the Survey! >> https://ec.europa.eu/eusurvey/runner/CSDataManagement Full Article News
pe Article Alert: Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs) By www.eubon.eu Published On :: Fri, 07 Aug 2015 16:59:00 +0300 One of our recent associated partners, the EU project GLOBIS-B has published its first paper: "Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)". You can find the article here. Abstract: Essential biodiversity variables (EBVs) have been proposed by the Group on Earth Observations Biodiversity Observation Network (GEO BON) to identify a minimum set of essential measurements that are required for studying, monitoring and reporting biodiversity and ecosystem change. Despite the initial conceptualisation, however, the practical implementation of EBVs remains challenging. There is much discussion about the concept and implementation of EBVs: which variables are meaningful; which data are needed and available; at which spatial, temporal and topical scales can EBVs be calculated; and how sensitive are EBVs to variations in underlying data? To advance scientific progress in implementing EBVs we propose that both scientists and research infrastructure operators need to cooperate globally to serve and process the essential large datasets for calculating EBVs. We introduce GLOBIS-B (GLOBal Infrastructures for Supporting Biodiversity research), a global cooperation funded by the Horizon 2020 research and innovation framework programme of the European Commission. The main aim of GLOBIS-B is to bring together biodiversity scientists, global research infrastructure operators and legal interoperability experts to identify the research needs and infrastructure services underpinning the concept of EBVs. The project will facilitate the multi-lateral cooperation of biodiversity research infrastructures worldwide and identify the required primary data, analysis tools, methodologies and legal and technical bottlenecks to develop an agenda for research and infrastructure development to compute EBVs. This requires development of standards, protocols and workflows that are ‘self-documenting’ and openly shared to allow the discovery and analysis of data across large spatial extents and different temporal resolutions. The interoperability of existing biodiversity research infrastructures will be crucial for integrating the necessary biodiversity data to calculate EBVs, and to advance our ability to assess progress towards the Aichi targets for 2020 of the Convention on Biological Diversity (CBD). Original Source: W. Daniel Kissling et. al. (2015) Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs). Biodiversity. DOI: 10.1080/14888386.2015.1068709 Full Article News
pe Strengthening cooperation on Earth observation and the environment By www.eubon.eu Published On :: Tue, 15 Sep 2015 11:18:00 +0300 The European Environment Agency (EEA) and the European Space Agency (ESA) signed a Memorandum of Understanding, which sets out common objectives and areas of cooperation in the field of Earth observation and the environment over the coming years, announces a news item published on the EEA website. Satellite data, such as that provided by the ESA, is a key component of environmental knowledge. The broader view satellite measurements offer of a particular subject at a particular time have improved environmental monitoring, leading to more evidence based policy and, ultimately, better environmental management. The Memorandum of Understanding sets objectives for the exchange of scientific expertise and technical information between the agencies, providing the basis for mutual access to data and the promotion of joint activities. Read more in the original news item here. Full Article News
pe New EU BON Policy Brief on Open Data By www.eubon.eu Published On :: Thu, 24 Sep 2015 12:26:00 +0300 The fifth EU BON Policy brief focuses on the need for open data in biodiversity monitoring. The Group on Earth Observation’s Biodiversity Observation Network, of which EU BON is a part, has a vision to better monitor and manage the global biosphere for our common good. This creates research challenges that require use of all appropriate data. Yet, access to data is impaired because, traditionally, few data are released, they are often locked up in traditional scientific literature, or because of concerns over intellectual property rights. Because of this, EU BON endorses the free and open exchange of data and knowledge in accordance with the "Joint Declaration on Open Science for the 21st Century", especially in regard to scientific information produced in Europe as outlined by the European Commission. Find out more in the Policy Brief below: Full Article News
pe ESA Living Planet Symposium 2016: Abstract Submission is Open By www.eubon.eu Published On :: Thu, 24 Sep 2015 16:55:00 +0300 The 2016 European Space Agency Living Planet Symposiumwill be held in Prague, Czech Republic from 9-13 May 2016 and is organised with the support of the Ministry of Transport, Ministry of Environment and Ministry of Education, Youth and Sports of the Czech Republic. The event follows previous successful symposia held in Edinburgh (2013), Bergen (2010), Montreux (2007) and Salzburg (2004). The first announcement has been now released, with a deadline for abstract submission on 16 October 2015. All received abstracts will be reviewed by a Scientific Committee, notification of acceptance will be provided in early February 2016. Registration to attend the event (free of charge) will be opened in February 2016, after the publication of the preliminary programme. The objectives of the ESA Living Planet Symposium are to: Present the progress and plans for the implementation of ESA Earth Observation strategy and the relevance of ESA's EO Programme to societal challenges, science and economy. Provide an international forum to scientists, researchers and users to present and share state of the art results based on ESA's Earth Observation and third-party mission data. Review the development of Earth Observation applications. Present the Copernicus space component and operational services. Report on ESA’s Exploitation Programmes (i.e. Climate Change Initiative, SEOM, DUE, VAE, STSE). Introduce the current and future planned Earth Observation missions. Outline ESA’s international cooperation in the field of Earth Observation. Provide dedicated thematic tutorials and demonstrations. For more information, please visit: http://lps16.esa.int Full Article News
pe Pan-European Species-directories Infrastructure: Basis for handling big taxonomic data By www.eubon.eu Published On :: Wed, 30 Sep 2015 18:39:00 +0300 Looked down on with scepticism by many taxonomists, handling big data efficiently is a huge challenge that can only be met with thorough and multi-layered efforts from both scientists and technological developers. Projects like the Pan-European Species-directories Infrastructure (PESI), started in 2009, prove that harmonised taxonomic reference systems and high-quality data sets are possible through dynamic, expertly created and managed online tools. The methods, results and future prospects of PESI are available in the open access Biodiversity Data Journal. With environmental changes occurring at an unprecedented rate around the world, biological communication needs to be left off the pace at no point. Phenomena such as species' migration, extinction, intrusion; ecosystem stability; decline of pollinators and pest invasion have to be monitored closely and identified momentarily. In order to do so, proper identification based on reliable and easily accessible data is crucial. Therefore, the three key objectives of PESI include standardisation in taxonomic reference systems, enhancement of the quality and completeness of taxonomic data sets and creation of integrated access to taxonomic information. The five pillars of biological community networks, Zoology, Botany, Marine Biota, Mycology and Phycology, have been integrated in five infrastructural components: knowledge, consensus, standards, data and dissemination. As a result, PESI did not only merge data from a range of sources and published a total of nearly 450,000 scientific names online. It also maintains networks of outstanding experts and national focal points, so that it makes sure that the taxonomic information, it relies on, is always at its finest, while simultaneously takes care about delivering persistent standards and easily accessible up-to-date biodiversity data. PESI results will also feed as an essential part for the advancement of relevant EU projects, such as Building the European Biodiversity Observation Network (EU BON). In the EU BON project, the PESI Backbone will be advanced to satisfy the needs of the GEO BON / GEOSS system, also serving as a taxonomic backbone for the projected EU BON Biodiversity Portal. Aiming at standardisation and integration of taxonomic data across platforms PESI also works in close collaboration with other relevant projects including GBIF, LifeWatch, the Catalogue of Life, the Encyclopedia of Life, the Global Names Architecture, GÉANT, ViBRANT, OpenUp!,BioVeL, iMarine , EU BON and BiodiversityKnowledge . "Scientific names are key carriers of biodiversity information. Therefore, for the efficient exploring and integration of biodiversity data, the development of a functional taxonomic resolution system, including the establishment of a shared taxonomic standard (as a core component), is essential for all sorts of biodiversity assessments. PESI provides such an infrastructure for Europe, integrating the relevant technical (informatics) and social (knowledge & users) networks into a common work program, serving a wide community of biodiversity workers," says Dr. Yde de Jong, coordinator of the Pan-European Species-directories Infrastructure (PESI) project. "The PESI Taxonomic Backbone serves as a taxonomic data standard resource, facilitating and optimising the integration and sharing of European biodiversity data, supporting a wide range of European services, major biodiversity programs and stakeholders on nature conservation and biodiversity management," conclude their results the scientists. Original Source: de Jong Y, et al. (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848.doi: 10.3897/BDJ.3.e5848 Additional Information: The Pan-European Species-directories Infrastructure (PESI) provides standardised and authoritative taxonomic information by integrating and securing Europe's taxonomically authoritative species name registers and nomenclators (name databases) and associated expert(ise) networks that underpin the management of biodiversity in Europe. PESI kicked-off as an EC-FP7 project, running from 2009 to 2011. PESI proceeded from the EC-FP6 Networks of Excellence EDIT, on developing a European Distributed Institute of Taxonomy, and MarBEF, on Marine Biodiversity and Ecosystem Functioning. Building the European Biodiversity Observation Network (EU BON) is a European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU. Full Article News
pe Streamlined import of specimen & occurrence records into taxonomic manuscripts By www.eubon.eu Published On :: Fri, 30 Oct 2015 10:55:00 +0200 Substantial amount of documented occurrence records is awaiting publication stored in repositories and data indexing platforms, such as the Global Biodiversity Information Facility (GBIF), Barcode of Life Data Systems (BOLD Systems), or Integrated Digitized Biocollections (iDigBio). In order to streamline the authoring process, save taxonomists time, and provide a workflow for peer-review and quality checks, Pensoft has introduced an innovative feature that makes it possible to easily import occurrence records into a taxonomic manuscript. Prior to this development, Pensoft's ARPHA Writing Tool (AWT) only used the "upload from Excel" approach for this workflow. Although this method significantly simplified the process of importing materials and is actively used by the authors, it still required one extra transposition step. Now, we added a new even more user-friendly option. By simply specifying an identifier (ID) in the relevant box, the new import plugin allows for occurrence data, stored at GBIF, BOLD systems, or iDigBio, to be be directly inserted into the manuscript. It all happens in the user-friendly environment of the AWT, where the imported data can be then edited before submission to the Biodiversity Data Journal. Not having to retype or copy/paste species occurrence records, the authors save a lot of efforts. Moreover, they automatically import them in a structured Darwin Core format, which can be easily downloaded from the article text into structured data by anyone who needs the data for reuse after publication. Another important aspect of the workflow is that it will serve as a platform for peer-review, publication and curation of raw data, that is of unpublished individual data records coming from collections or observations stored at GBIF, BOLD and iDigBio. The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241. Full Article News
pe Monitoring farmland biodiversity across Europe: It could cost less than you think By www.eubon.eu Published On :: Fri, 06 Nov 2015 18:15:00 +0200 How can we monitor Europe-wide farmland biodiversity so that it makes sense to farmers, is ecologically credible and scientifically sound and can be implemented for a reasonable price? Two new studies answer these questions. First, stakeholders were asked, which indicators provided best "value for money" for their purpose. Habitat, plant species and farm management indicators ranked highest. Wild bees, earthworms and spiders as important providers of ecosystem services came next. Together they form a minimum set of indicators which provides non-redundant information and which can make dominant changes in farmland biodiversity visible. Researchers from the FP7 funded EU projects "Biodiversity Indicators for European Farming Systems (BioBio)" and "Building the European Biodiversity Observation Network (EU BON)", then developed cost estimates for nine monitoring scenarios and the authors conclude that a continent-wide farmland biodiversity monitoring scheme would require only a modest share of the Common Agricultural Policy (CAP) budget (2014-2020). Cost assessments showed that the farmland biodiversity monitoring scenarios require 0·01% - 0·74% of the total CAP budget and 0·04% - 2·48% of the CAP budget specifically allocated to environmental targets. With 30% of the CAP devoted to environmental targets (more than 120 billion EURO), investing in a monitoring process seems a logical choice given these results. The researchers provide a framework for individual countries to start farmland biodiversity monitoring, building towards a coherent European picture. The studies were published in the Journal of Applied Ecology and the Journal of Environmental Management. "Despite scientific proof that monitoring increases the (cost) efficiency of policy measures, monitoring rarely gets included in policy programme budgets. We identified that the cost are not as high as feared. To further facilitate implementation, the study provides stepping stones to build a European monitoring scheme, offering a choice in indicators and using regions as a unit of trend analysis," explains Dr. Ilse Geijzendorffer, the lead author of the Journal of Applied Ecology paper. Original Source: Geijzendorffer, I. R., Targetti, S., Schneider, M. K., Brus, D. J., Jeanneret, P., Jongman, R. H.G., Knotters, M., Viaggi, D., Angelova, S., Arndorfer, M., Bailey, D., Balázs, K., Báldi, A., Bogers, M. M. B., Bunce, R. G. H., Choisis, J.-P., Dennis, P., Eiter, S., Fjellstad, W., Friedel, J. K., Gomiero, T., Griffioen, A., Kainz, M., Kovács-Hostyánszki, A., Lüscher, G., Moreno, G., Nascimbene, J., Paoletti, M. G., Pointereau, P., Sarthou, J.-P., Siebrecht, N., Staritsky, I., Stoyanova, S., Wolfrum, S., Herzog, F. (2015), How much would it cost to monitor farmland biodiversity in Europe?.Journal of Applied Ecology. doi: 10.1111/1365-2664.12552 S. Targetti, F. Herzog, I.R. Geijzendorffer, P. Pointereau, D. Viaggi, Relating costs to the user value of farmland biodiversity measurements, Journal of Environmental Management, Volume 165, 1 January 2016, Pages 286-297, ISSN 0301-4797, http://dx.doi.org/10.1016/j.jenvman.2015.08.044. Full Article News
pe Investing in European success – A Decade of Success in Earth Observation Research and Innovation By www.eubon.eu Published On :: Thu, 19 Nov 2015 11:59:00 +0200 The European Commission has recently released publication focused on Earth Observation Research and EU BON is one of the successful projects featured in it. The publication titled "Investing in European success – A Decade of Success in Earth Observation Research and Innovation" looks at the benefits that Earth Observation brings to studying and protecting the environment. The Earth’s atmosphere, oceans and landscapes are changing rapidly, with human activities being a major driver. Monitoring and modelling these changes are critical because they allow governments, society and the private sector to make informed decisions about climate, energy, food security, natural hazards, health and other societal challenges. To be effective, these responses must be grounded in comprehensive and timely information. More importantly, decision makers, managers and experts must have access to the information they need, when they need it and in a format which can be easily utilised. To address this challenge, the intergovernmental Group on Earth Observations (GEO) has provided a voluntary framework since 2005 where 98 governments, the European Commission and 87 international organisations develop new projects and coordinate their strategies and investments in the field of Earth observation. The vision of GEO is to realise a future wherein decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations and information. GEO’s main objective is to develop and implement the Global Earth Observation System of Systems (GEOSS). EU BON is an attempt to overcome these problems at European level and to contribute to the Group on Earth Observations’ (GEO) global initiative with the same aims – GEO BON. Find the full publication here, EU BON can be found featured on pages 26 - 27. Full Article News
pe Europe for GEOSS: EU BON attracts high level attention at the GEO XII Plenary in Mexico City By www.eubon.eu Published On :: Thu, 26 Nov 2015 10:37:00 +0200 The GEO-XII Plenary and Ministerial Summit, as well as many associated meetings and events were hosted by the Mexican Government and took place in Mexico City from 9 to 13 November 2015. The five-day event brought together GEO member countries and organizations, as well as scientists and stakeholders from across the world to debate the next decade for GEO, and to discuss the latest developments in Earth Observation technologies and applications. The GEO-XII Plenary approved the GEO Strategic Plan 2016-2025, and the Summit endorsed a Mexico City Declaration (see: http://www.earthobservations.org/geo12.php). Mexican music and folklore performances at the hosted conference dinner at GEO-XII; Credit: Hannu Saarenmaa EU BON participated at GEO-XII and was represented at the European Commission Stand "Europe for GEOSS" with a poster and a short video clip. A real highlight was the visit by the European Commissioner for Research, Science and Innovation, Carlos Moedas. During his short visit, the Commissioner took specific interest in the project and spent some time discussing EU BON's relevance with the coordinator and his staff. The EC stand "Europe for GEOSS" at GEO-XII, and discussions on EU BON with Commissioner Carlos Moedas; Credits: Jose Miguel Rubio Iglesias (left), Helmut Staudenrausch (right) EU BON was also presented during a dedicated side event entitled "The GEO Biodiversity Observation Network (GEO BON): Enhancing Biodiversity Observations and Products for User Needs". The project’s key products were introduced by the project coordinator Christoph Häuser and the workpackage 2 leader Hannu Saarenmaa. Full Article News
pe Integrating Biodiversity Observations to Better Track the CBD 2020 Targets: A special issue By www.eubon.eu Published On :: Tue, 15 Dec 2015 05:12:00 +0200 A new special issue titled "Connecting the Dots: Integrating Biodiversity Observations to Better Track the CBD 2020 Targets" looks at Biodiversity Observatios and the ways that can be integrated into the CBD 2020 targers, for better results in biodiversity conservation. The issue, where a number of GEO BON partners are authors, explores a wide variety of aspects of Biodiveristy Observations, including data management, integration of in-stiu data, the roles and contricutions of BONs, contextualization with the UN's Sustainable Developmen Goals, and many more. For more information and to see what is included in the Special Issue, click here. Full Article News
pe EU BON meets LTER Europe By www.eubon.eu Published On :: Thu, 14 Jan 2016 14:22:00 +0200 From the 9th to 10th of December 2015 in Granada, Spain EU BON met representatives of LTER Europe. The aim of the meeting was to see where working programmes overlap and whether potential joint products can be identified. In addition the meeting was attended by GEO BON colleagues and included a vision of the upcoming GSEO initiative. The first day was used to get to know each other and to present first ideas for joint developments. On the second day smaller groups concentrated on three possible joint working areas for the near future: 1) Extended test phase and application of WP3 tools and others 2) Technical/IT aspects, besides others, the use of DEIMS, PlutoF, datasets 3) Development of a manual/best practice for site-based long-term biodiversity observation and monitoring programme Three working groups will be established and will start their work immediately. Full Article News
pe Article Alert: New TEAM network paper looks at standardized assessment of biodiversity trends in tropical forest protected areas By www.eubon.eu Published On :: Tue, 26 Jan 2016 17:42:00 +0200 The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment. A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas. Abstract: Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropicalforests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse. Original Source: Beaudrot L, Ahumada JA, O'Brien T, Alvarez-Loayza P, Boekee K, Campos-Arceiz A, et al. (2016) Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight. PLoS Biol 14(1): e1002357. doi:10.1371/journal.pbio.1002357 You can also read more in the paper's commentary. Full Article News
pe Interview: Dr. Mark Frenzel on LTER-Europe, ecological research and co-working with EU BON By www.eubon.eu Published On :: Mon, 01 Feb 2016 11:28:00 +0200 EU BON has signed memoranda of understanding with almost thirty institutions and projects from across Europe and outside to state its desire for collaboration and exchange of expertise. Among the early partners in this list is the LTER-Europe group, focussed on the integration of scientific research and ecosystem research approaches, including the human dimension. Dr. Mark Frenzel who took part in the EU BON Third Stakeholder roundtable in December 2015, gives an overview of his impressions from the meeting as well as his ideas on the co-work between LTER-Europe and EU BON. Credit: Florian Wetzel Q: The LTER-Europe network looks at conceptualizing Long-Term Ecosystem Research (LTER) as an essential component of world-wide efforts to better understand ecosystems. How is the network planning to achieve this? A: This is / will be achieved mainly by funded project work. Actually the H2020 eLTER project is the most important backbone, an ESFRI eLTER initiative is running too. In terms of content there are several challenges which need to be addressed: (1) Harmonisation in terms of what and how is being measured at LTER sites, (2) collection and representation of metadata about sites, actors and data sets within the web tool DEIMS, (3) open access of data and DOI registration of data sets, (4) considering the human component as a major driver for changes in ecosystems by including socio-economy and socio-ecology in the LTER approach. Q: How would EU BON and its planned European biodiversity portal be beneficial to LTER-Europe and its aims in the next years? A: Biodiversity is not the only, but an important focus within LTER. It depends on the services and benefits connected with this portal and its long-term perspective. The most important added value I would see in an elaborated framework-based agreement on the set of "essential biodiversity variables" which will be a compromise between importance and feasibility. This selection process should be well tuned with the relevant players in this field. Q: The LTER-Europe network includes several hundreds of sites that are collecting large amounts of data – how can this data be used for improving our knowledge of biodiversity, particularly for policy-relevant questions? A: The big advantage (and potential) of LTER-Europe sites is the coverage in terms of geography and bioms, the general shortcoming is in the heterogeneous reasons why these sites have been set up (e.g. for monitoring air pollution) and that there is no targeted funding (in terms of a specific research question) for all sites. Not all sites are dealing with biodiversity data. First, suitable sites need to be selected according to metadata in DEIMS (https://data.lter-europe.net/deims/). Second, data sets according to fitting topics have to be compiled (perhaps no easy task, as datasets up to now are not exhaustively documented). Site managers of representative sites (depending on the question to be addressed) could be motivated to create a common standardised data sets (needs external funding depending on the resources necessary for the task or at least a very attractive research question) responding to e.g. policy needs. Moreover, the long-term knowledge of site coordinators about the development and the important drivers of change at their sites (e.g. by assessing ecosystem services) comprises valuable meta information about the context of data sets. Data obtained from the sites could potentially help with policy-relevant questions like status of endangered species or status of ecosystem service relevant system parameters which could be extracted from LTER sites. Q: According to you what are the next three most urgent step in order to achieve better understanding of ecosystem services and their benefits for policy, economics and society? A: (1) reliable data and suitable scale of data, (2) understanding the effect of scale on ecosystem services, (3) make use of large networks to approach this issue, bring the results down to a scale understandable for the layman. About LTER-Europe: Long-Term Ecosystem Research (LTER) is an essential component of world-wide efforts to better understand ecosystems. LTER contributes to the knowledge base informing policy and to the development of management options in response to the Grand Challenges under Global Change. From the beginning (around 2003) the design of LTER-Europe has focussed on the integration of natural sciences and ecosystem research approaches, including the human dimension. LTER-Europe was heavily involved in conceptualizing socio-ecological research (LTSER). As well as LTER Sites, LTER-Europe features LTSER Platforms, acting as test infrastructures for a new generation of ecosystem research across European environmental and socio-economic gradients. Full Article News
pe Interview: Clint Alibrandi from REDIAM on the benefits of an European Biodiversity Portal By www.eubon.eu Published On :: Mon, 22 Feb 2016 15:01:00 +0200 One of the main outputs of EU BON will be the establishment of an European Biodiversity Portal based on data collected and compiled from a variety of sources including earth observations but also observations and monitoring data from (local) sites. One of the main points of this portal is to serve as a substantial building block of a global biodiversity portal planned by the Group of Earth Observations project GEO BON. But how will this portal be useful to stakeholders on a more local level - for example for people involved in questions connected to biodiversity across European regions? What will be the real benefits of it for biodiversity monitoring and conservation? Just a couple of weeks after the Third EU BON Stakeholder Round Table in Granada, Spain, Mr Clint Alibrandi from REDIAM (Environment and Water Agency in Andalusia) gives us his views on these questions. Picture: Excursion to Sierra Nevada.; Credit: Katrin Vohland Q: REDIAM shares a mission with EU BON in its attempt to collect, standardize and distribute available biodiversity data. What will be the expected benefits and challenges in the process of making this type of datasets available for society and environmental policy? A: Among the responsibilities of the Regional Environmental Government of Andalusia are promoting Social Environmental Awareness, Managing a vast, diverse and very complex territory, Control and Mitigate any threats posed to the fragile ecosystems present in our region as well as all the responsibilities derived from the management and planning of the existing natural resources. Considering these facts, it is necessary to be able to account for the best environmental information available. Since the early 80’s the Regional Environmental Government of Andalusia has been working on its Environmental Information System with the purpose of generating, compiling, standardizing and analyzing Environmental Information covering topics such as Climate, Water, Air Quality and Biodiversity by means of ICTs. This the REDIAM. The name comes from the Spanish Acronym "REd De Información AMbiental de Andalucía" which means the Environmental Information Network of Andalusia. It serves as a Unified Regional Environmental Information Registry. From this effort, the information obtained by the REDIAM is made publicly available to be then employed in Decision Making processes and Management Planning on behalf of the Administrations, for Dissemination and Awareness as well as for Research purposes. As such, it is of vital importance for the REDIAM to be able to account for updated and verifiable Information and Data Sources and this is what we consider to be the most important benefit on behalf of EU BON, as it will offer the possibility to have a higher level reference covering a larger perspective, allowing stakeholders, be it either from a local, regional or national level, to consult or work with data, tools and have reference to relevant policies concerning Biodiversity on the European scale in order to be able to better transpose them to a more local context. Yet the greatest challenge we believe that EU BON might come to face is the fact that the different contexts that exist over the whole European territory make it very difficult to tailor tools and information formats which can cover the different priorities or needs that exist in the diverse makeup of stakeholders that exist from a local, regional and national perspective. The same can most probably apply to the feedback, queries or requests made to EU BON on behalf of the stakeholder and user community. It is never easy to reach a common base level and from the regional perspective, REDIAM has faced the same type of situations. Q: What type of stakeholders do you hope to engage through your network - who is using your data and for what purposes? A: The stakeholders which are currently engaged with the REDIAM consist in Universities, Research Centres, Public Bodies, Local Administrations, Private Companies just to name a few examples. There are over 150 organizations which are partners of the REDIAM, they provide relevant Environmental Information to the REDIAM and are responsible for updating the information. And as can be expected,the information provided is as diverse as the makeup of stakeholders that are part of the REDIAM, with the following formats being made available: Cartography, Satellites Images, Databases, Reports, Statistics, Applications, Management Plans and Programmes, Orthophotos, Indicators, Studies. Additionally the REDIAM offers the user community different alternatives in order to access the previously indicated information. The REDIAM Channel is a web portal with a Catalogue and Information Search System, OGC Services, Query and Viewer tools, Downloader. The user community is able to access its information and services. This community consists in Citizens, Universities, Public Administrations and Companies from the Public and Private Sector. Q: Where do you see the cross section between REDIAM’s work and EU BON - what are the products from EU BON and other European projects that would be helpful for the work that you are doing? A: The REDIAM has great interest in the following issues and we believe that EU BON would be up to the task of providing solutions and/or guidelines on how to be able to proceed to solve them: The elaboration of a common tool for the description and localization of species throughout the European Territory. This can prove a very useful service for Environmental Impact Assessments by providing a more complete view on different species distribution on determined area. Defining a standardized list of species which contains the taxonomically correct name for each one of them. EU BON could serve as a base reference to set guidelines for standardizing the taxonomical classification of species. Support and guidance in defining specific biodiversity indicators as proposed by EUROSTAT, a methodological and assessment guide of some sort. Q: In your opinion what are the three greatest benefits of a European level biodiversity portal? A: 1) Offering an opportunity of Standardizing and Harmonizing Biodiversity related information. We all speak the same "language" when referring to Biodiversity, but it is necessary that we all be able to follow the same "rules" as well. This is the first and most important pillar we believe that a European level Biodiversity portal can bring into play. 2) It would allow for and facilitate a widespread exchange of information amongst stakeholders throughout the whole European Territory. 3) And finally, it would allow a common analysis on a European level which would provide a general assessment on how different efforts and policies are effective, value which is the real status of Biodiversity and/or specific species independently from the limit of administrative or country borders. About REDIAM: The Environmental Information Network REDIAM has onboard experts from the Regional Ministry of Environment in Andalusia and its Water and Environmental Agency. With a team expertise ranging from local to regional and European level and from technical know-how to regional and thematic assessment, the main aim of the network is to integrate all spatially-referenced biodiversity data produced in Andalusia. Raw data are used to generate knowledge and improve its distribution, making it accessible and comprehensible for the general public. Full Article News
pe Open access, data sharing, and citizen science among the topics of the last EU BON workshop By www.eubon.eu Published On :: Tue, 29 Mar 2016 14:23:00 +0300 Open access to biodiversity is key for addressing pertinent ecological issues such as biodiversity loss and impacts of climate change. On 22 & 23 March 2016, experts from EU BON met with scientists, policy makers and practitioners from across Europe to discuss issues of biodiversity data sharing, curation and publishing. The workshop, which took place in Sofia, Bulgaria, introduced participants to key concepts, demonstration and practical exercise in biodiversity data sharing using the GBIF Integrated Publishing Toolkit (IPT). Practical training sessions led by Larissa Smirnova from the Royal Museum for Central Africa (Belgium) and Kyle Braak from GBIF demonstrated the integration and management of datasets in GBIF. A step-by-step demo and practical session on how to publish a data was also featured in the workshop. Participants at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft Special attention was paid to innovative data publishing practices in a session led by the local hosts Pensoft Publishers who introduced their ARPHA publishing platform, as well as its new journal Research Ideas & Outcomes (RIO), which publishes unconventional output types across the research cycle, including data and software descriptions, workflows, methods and many more. PlutoF demonstrated its citizen science gateway and demonstrated how the citizen science data can be managed using the CS module. Plazi also presented their GoldenGate Imagine tool, optimized for marking up, enhancing, and extracting text and data from PDF files. Sessions at the at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft Full Article News
pe Potential of satellite remote sensing to monitor species diversity By www.eubon.eu Published On :: Mon, 04 Apr 2016 18:07:00 +0300 The importance of measuring species diversity as an indicator of ecosystem health has been long recognized and it seems that satellite remote sensing (SRS) has proven to be one of the most cost-effective approaches to identify biodiversity hotspots and predict changes in species composition. What is the real potential of SRS and what are the pitfalls that need to be avoided to achieve the full potential of this method is the topic of a new research, published in the journal Remote Sensing in Ecology and Conservation. The new study, supported by the FP7 funded EU project EU BON takes the assessment of diversity in plant communities as a case study. Showing the difficulties to achieve high results by relying only on field data, the paper discusses the advantages of SRS methods. "In contrast to field-based methods, SRS allows for complete spatial coverages of the Earth's surface under study over a short period of time. Furthermore, it provides repeated measures, thus making it possible to study temporal changes in biodiversity," explains Dr. D. Rocchini from Fondazione Edmund Mach, lead author and WP deputy leader / task leader in EU BON. "In our research we provide a concise review of the potential of satellites to help track changes in plant species diversity, and provide, for the first time, an overview of the potential pitfalls associated with the misuse of satellite imagery to predict species diversity. " Traditionally, assessment of biodiversity at local and regional scales relies on the one hand on local diversity, or the so called alpha-diversity, and on the other, on species turnover, or beta-diversity. Only in combination of these two measures can lead to an estimate of the whole diversity of an area. While the assessment of alpha-diversity is relatively straightforward, calculation of beta-diversity could prove to be quite challenging. This is where increased collaboration between the remote sensing and biodiversity communities is needed in order to properly address future challenges and developments. The new research shown the high potential of remote sensing in biodiversity studies while also identifying the challenges underpinning the development of this interdisciplinary field of research. "Further sensitivity studies on environmental parameters derived from remote sensing for biodiversity mapping need to be undertaken to understand the pitfalls and impacts of different data collection processes and models. Such information, however, is crucial for a continuous global biodiversity analysis and an improved understanding of our current global challenges."concludes Dr. Rocchini. Original Source: Rocchini, D., Boyd, D. S., Féret, J.-B., Foody, G. M., He, K. S., Lausch, A., Nagendra, H., Wegmann, M., Pettorelli, N. (2016), Satellite remote sensing to monitor species diversity: potential and pitfalls. Remote Sensing in Ecology and Conservation, 2: 25-36. doi: 10.1002/rse2.9 Full Article News
pe Registration open for the 10th GEO European Projects Workshop By www.eubon.eu Published On :: Wed, 06 Apr 2016 10:49:00 +0300 Registration for the "10th GEO European Projects Workshop" is now open until 2 May 2016. The event this year will take place in Berlin, Germany, spanning over three days from 31 May to 2 June 2016. To register and learn more, please click here. An EU BON-Team from the Museum für Naturkunde will also organize a Break Out Session at the event. The dedicated session #11 is called "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years", where several EU-projects will present their current and future activities with regards to biodiversity and ecosystem data, knowledge and contributions to the GEO work. This will be followed by interactive World Cafés: World Café desk I: EEA and policy – data/model/portal needs. World Café desk II: Follow-up joint products of GEO EU Biodiversity projects. World Café desk III: Strengthening the in-situ approach in GEO by biodiversity and ecosystem-related projects. World Café desk IV: Connecting with other GEO Societal Benefit Areas (SBAs), e.g. Agriculture, Health. Full Article News
pe Job Alert: Project Manager position open at the University of Granada By www.eubon.eu Published On :: Tue, 12 Apr 2016 09:46:00 +0300 Applications for a Project Manager position for the Horizon 2020 project called COOP+ are now open at the University of Granada (Spain). This project aims to foster the cooperation among EU environmental research infrastructures (EISCAT, ICOS, EMSO, LifeWatch) and their international counterparts (NEON, TERN, AMERIFLUX, LBA, ILTER, OOI, AMISR, IMOS, etc.). The Project Manager will be in contact with the project consortium on a daily basis to foster the cooperation among RIs. He/she will be responsible for communication with project partners (organizing meetings, workshops and videoconferences during the project duration, maintenance of web page). He/she will also participate in writing reports, timely production of deliverables as well as scientific outputs. He/she will join the "Laboratory of ecology" located in theAndalusian Institute for Earth System Research, at the University of Granada (Spain). More infornation on the position, requirements and how to apply can be found in the offcial job offer. Full Article News
pe Article Alert: A virtual species set for robust and reproducible species distribution modelling tests By www.eubon.eu Published On :: Fri, 15 Apr 2016 11:22:00 +0300 A new EU BON acknowledging data article provides a virtual species set as a valuable tool in biodiversity monitoring. Abstract Predicting species potential and future distribution has become a relevant tool in biodiversity monitoring and conservation. In this data article we present the suitability map of a virtual species generated based on two bioclimatic variables, and a dataset containing more than 700,000 random observations at the extent of Europe. The dataset includes spatial attributes such as: distance to roads, protected areas, country codes, and the habitat suitability of two spatially clustered species (grassland and forest species) and a wide-spread species. Original Source: Garzon-Lopez, C.X., Bastin, L., Foody, G.M., Rocchini, D. (2016). A virtual species set for robust and reproducible Species Distribution Modelling tests. Data in Brief, 7: 476-479. doi: http://dx.doi.org/10.1016/j.dib.2016.02.058 Full Article News
pe We’ve been busy: EU BON discusses its Biodiversity Portal prototype & strategies for focused biodiversity data mobilization By www.eubon.eu Published On :: Tue, 17 May 2016 17:48:00 +0300 April proved to be an eventful month for EU BON, hosting the presentation of two major project results, not only within the same month, but in the course of one week. While CSIC and partners were launching the beta-version of the long-waited Biodiversity Portal in Seville, another EU BON team was busy to search for Integrated approaches for focused biodiversity data mobilization in Stockholm. About the Portal: In a dedicated session at the WP2 meeting in Seville, Spain, EU BON partners had the chance to view their work for the last couple of years materialising into one of the main expected project results - the European Biodiversity Portal. That said, what was then presented on 29 April is a beta version, with the final release of the portal planned to become available in early 2017. Participants at the Seville Workshop, April 2016. Credit: A. Hoffmann Nonetheless, this beta version already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations. Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources. This release also highlights the products of the EU BON project, including new methods and analyses packed in factsheets and infographics for the convenience of scientists and policy users alike. Explore the portal’s beta version here. Suggestions of how to develop the beta portal further towards the full release are appreciated. Use the feedback form at the welcome page. Integrated biodiversity data mobilization: It is a challenge for Bioinformatics group in Europe and around the world to find better ways to integrate different systems and technology. In EU BON’s Task 1.4 the approach to solving this issue was to integrate different systems managing natural history collections and molecular data systems using the best techniques available. In a dedicated workshop, which took place in Stockholm, Sweden, developers in the sphere of bioinformatics were presented with the project’s Data Mobilization Toolkit. This particular workshop was mainly focused on Docker as a tool to move towards a more integrated environment. Docker has revolutionized system integration and in the workshop the Swedish team shared their experience with dockerizing the DINA-system. Discussions during the Stockholm workshop; Credit: Karin Karlsson The workshop ended with a hackathon where they together explored the possibilities for using Docker in selected parts of integrating Pluto-F, JACQ and DINA. Full Article News
pe Welcoming our latest associated partner: ECSA - European Citizen Science Association By www.eubon.eu Published On :: Thu, 26 May 2016 17:43:00 +0300 ECSA – the European Citizen Science Association is the latest addition to our ever growing group of associated partners. The Memorandum of Understanding handover took place at the reception of the ECSA Conference at the Museum für Naturkunde on 19 May 2016. ECSA is a network of Citizen Science initiatives, research institutes, universities, museums, other organisations and individuals from 20 EU countries, Switzerland, Israel and the US, who are working together with the mission to connect citizens and science through fostering active participation. ECSA is a registered non-profit association administered by a Secretariat hosted at the Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Research (MfN) in Berlin, Germany. See the full list of associated partners here. Photo: Signing the MoU between ECSA Chair of Data, Tools and Technology Committee Dr. Jaume Piera and EU BON's Project manager Anke Hoffmann; Credit: Hwaja Götz Full Article News
pe A new Biodiversity Portal for Europe to enhance access to monitoring data By www.eubon.eu Published On :: Thu, 09 Jun 2016 17:45:00 +0300 Set to compile the largest biodiversity data collection for Europe to date, the EU-funded FP7 project Building the European Biodiversity Observation Network (EU BON) has now launched the beta-version of its European Biodiversity Portal. Despite being a beta version, this release already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations. Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources. Started in 2012, the five-year project EU BON has been working towards building this new European Biodiversity Portal where scattered and various information and tools are collected, highlighted and widely shared for future research. The service will provide all interested parties with a professional database platform with a large amount of implications. For example, coordinators can receive information about related monitoring programs in different countries. Initiatives could integrate their data and compare the trends and status across different countries and regions. "The ultimate goal of EU BON is to build a comprehensive European Biodiversity Portal that will then feed into a Global Portal currently developed by GEO BON. This initiative will provide a completely new holistic way for analyzing global trends and processes.", concludes Dr. Hannu Saarenmaa, University of Eastern Finland and Work Package leader in EU BON. We invite everyone to test the new portal and send us their feedback and suggestions for improvements via our Feedback Form. Full Article News
pe EU BON at the 10th GEO European Projects Workshop By www.eubon.eu Published On :: Wed, 15 Jun 2016 10:42:00 +0300 The 10th GEO European Projects Workshop took place from 31 May until 2 June 2016 in Berlin, Germany. Representatives from science, business and public administration met in Berlin to discuss how European Earth observation initiatives can contribute to the Global Earth Observations System of Systems (GEOSS). The workshop, was jointly organised by the European Commission, the Federal Ministry of Transport and Digital Infrastructure of Germany, and the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science. A wide range of events gave projects the opportunity to showcase their work and findings and discuss the future of earth observations. The event also featured a series of world cafés where, in a more informal and relaxed environment, experts could discuss topics focused on different aspects and challenges for biodiversity and ecosystem observation for the next ten years. Group photo of the participants at the 10th GEO European Projects Workshop; Credit: H. Götz During the meeting EU BON was presented at a specialized session focusing on the "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years". EU BON’s co-ordinator Dr. Christoph Häuser alongside project partner and WP2 leader Dr. Hannu Saarenmaa presented the latest project developments and results. #GEPW16 @EUBON1 Christoph Häuser: gaps in biodiversity data in Europe pic.twitter.com/4j02nlUUxJ — ENEON (@ENEONetwork) June 2, 2016 Special attention was paid to presenting and explaining the functionalities of the recently launched beta version of the EU BON European Biodiversity Portal, which aims to provide a substantial part of GEO BON’s Global Portal. Clockwise from top left: Dr. Christoph Häuser presenting EU BON; Audience of the 10th GEO Projects Workshop; Panel at the Biodiversity and Ecosystem session; Credits: Florian Wetzel, Hwaja Götz and Anke Hoffmann. For further information see: Presentations General Programme Find out more resources on the official event webpage. Full Article News
pe UNEP GEO-6 Assessment for the pan-European region released By www.eubon.eu Published On :: Tue, 28 Jun 2016 11:01:00 +0300 As part of the new 6th Global Environment Outlook (GEO-6) UNEP has just released a separate Assessment for the pan-European region. The report provides an overview on the current state, trends and an outlook for the environment, and also highlights environmental factors that contribute to human health and well-being at the regional level. Biodiversity is of central importance for human well-being and features prominently in the GEO-6 regional assessment. The state of biodiversity and ecosystems continue to give reason for major concerns and call for continued attention and increased efforts. The European Biodiversity Observation Network – EU BON – through its coordinating institution, the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science contributed significantly to this report. Credits: UNEP/UNECE 2016, UNEP-WCMC based on IUCN (2014) data The assessment for the pan-European region clearly indicates that biodiversity loss and ecosystem degradation is continuing in the region. Ongoing biodiversity decline and loss is particularly high in Eastern and Western Europe. Some positive developments and individual success stories offer lessons worth learning, for example developments of protected area networks such as Natura 2000 and the pan-European Emerald Network. However, an important challenge that needs urgent attention is improving availability and open access to comprehensive and integrated biodiversity data to support assessments and analysis, as well as planning and implementation of conservation efforts. The full report can be found here: http://bit.ly/21q2ghL UNEP press release: http://bit.ly/24A7sQN For more information please contact: Dr. Christoph Häuser christoph.häuser@mfn-berlin.de and Dr. Florian Wetzel florian.wetzel@mfn-berlin.de Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrassse 43, 10115 Berlin. Full Article News
pe Article Alert: Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives By www.eubon.eu Published On :: Fri, 01 Jul 2016 18:23:00 +0300 A new research paper Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives published in the journal Ecological Indicators looks at the ways in which earth observation (EO) techniques may provide a solution to overcome shortcomings in biodiversity monitoring by measuring entities of interest at different spatial and temporal scales. Abstract: Impacts of human civilization on ecosystems threaten global biodiversity. In a changing environment, traditional in situ approaches to biodiversity monitoring have made significant steps forward to quantify and evaluate BD at many scales but still, these methods are limited to comparatively small areas. Earth observation (EO) techniques may provide a solution to overcome this shortcoming by measuring entities of interest at different spatial and temporal scales. This paper provides a comprehensive overview of the role of EO to detect, describe, explain, predict and assess biodiversity. Here, we focus on three main aspects related to biodiversity taxonomic diversity, functional diversity and structural diversity, which integrate different levels of organization molecular, genetic, individual, species, populations, communities, biomes, ecosystems and landscapes. In particular, we discuss the recording of taxonomic elements of biodiversity through the identification of animal and plant species. We highlight the importance of the spectral traits (ST) and spectral trait variations (STV) concept for EO-based biodiversity research. Furthermore we provide examples of spectral traits/spectral trait variations used in EO applications for quantifying taxonomic diversity, functional diversity andstructural diversity. We discuss the use of EO to monitor biodiversity and habitat quality using differ-ent remote-sensing techniques. Finally, we suggest specifically important steps for a better integrationof EO in biodiversity research.EO methods represent an affordable, repeatable and comparable method for measuring, describing,explaining and modelling taxonomic, functional and structural diversity. Upcoming sensor developmentswill provide opportunities to quantify spectral traits, currently not detectable with EO, and will surelyhelp to describe biodiversity in more detail. Therefore, new concepts are needed to tightly integrate EOsensor networks with the identification of biodiversity. This will mean taking completely new directionsin the future to link complex, large data, different approaches and models. Original reseach: A. Lausch, L. Bannehr, M. Beckmann, C. Boehm, H. Feilhauer, J.M. Hacker, M. Heurich, A. Jung, R. Klenke, C. Neumann, M. Pause, D. Rocchini, M.E. Schaepman, S. Schmidtlein, K. Schulz, P. Selsam, J. Settele, A.K. Skidmore, A.F. Cord, Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives, Ecological Indicators, Volume 70, November 2016, Pages 317-339, ISSN 1470-160X, http://dx.doi.org/10.1016/j.ecolind.2016.06.022 Full Article News
pe EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" By www.eubon.eu Published On :: Thu, 07 Jul 2016 16:09:00 +0300 The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries. There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community. Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi . . Workshop agenda Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania): http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2 Full Article News
pe EU BON digital identifiers for fungal species in Science By www.eubon.eu Published On :: Tue, 19 Jul 2016 17:17:00 +0300 A recent article in the academic journal Science published by Prof. Urmas Kõljalg and colleagues aims to explain the possibilities for identifying species determined based on DNA samples only. The article was published as a response to David Hibbetts paper "The invisible dimension of fungal diversity". The American mycologist Hibbett argues that huge amount of fungal species cannot be identified and described scientifically as the international code does not permit describing new species based on DNA samples derived from molecular surveys of the environment. However, the Estonian and Swedish scientists show – analysing the same data – how DNA based fungal species have been identified and communicated for several years now using database UNITE (https://unite.ut.ee). In the forests of Laos the mushroom season has already begun. Among the mushrooms presented on these dishes one can most likely also find species scientifically yet undescribed. The digital object identifiers (DOIs) system created by the scientists in Tartu permits comunication of these species already before they have been granted scientific names. Writing about poisonous mushrooms for example helps to keep people informed, so that cases of intoxication can be avoided more often. (Photo: Urmas Kõljalg) "Traditionally species are determined based on their morphology and anatomy, in printed books – traditional keys to nature – species are displayed on pictures and in written descriptions. But DNA of fungi can also be found in samples of soil, of leaves, of air, in these circumstances we do not actually have the fungus itself and we cannot identify it visually," Urmas Kõljalg explains the core of the matter. "In this case, species can be determined evaluating their DNA sequences." The UNITE Species Hypotheses approach demonstrates how the DNA based fungal species can be referred to in a proper scientific manner already before they have been described formally according to the code. This can be done using unique digital object identifiers (DOIs) given to all fungal species in the UNITE database. This keeps all the references automatically connected and machine-readable by other databases as well. "Even if the species will have its name ten years from now, the DOI code will help us go back and see, where the species was first described and who found it," Urmas Kõljalg says. For several years now by leading species classification platforms based on DNA sequences more than half a million DOI codes have been used as identifiers of fungal species. UNITE fungal codes are used by the most influential gene bank NCBI also. The UNITE system uses a new paradigm in identifying species, this paradigm was first described by Urmas Kõljalg and colleagues in 2013. UNITE – the global unified system for the DNA based fungal species – contains information of all the fungal species known from sequence data, hundreds of researchers from all over the world are collaborating. UNITE is hosted by PlutoF cloud, which permits creating very complex databases for various biodiversity data, including DOIs. The development of PlutoF system is supported by the Estonian research infrastructures roadmap project NATARC (http://natarc.ut.ee), EU BON (http://eubon.eu), etc. All scientists can use PlutoF for free. Full Article News
pe Article Alert: Measuring Rao's Q diversity index from remote sensing: An open source solution By www.eubon.eu Published On :: Fri, 26 Aug 2016 10:47:00 +0300 Key in ensuring the effectiveness of conservation efforts and maintaining ecosystem health, measuring biodiversity can benefit greatly when remote sensing data comes into the equation. A new EU BON related paper, published in the journal Ecological Indicators, proposes open source solutions for measuring the important Rao's Q index, when it comes to remote sensing data. Abstract: Measuring biodiversity is a key issue in ecology to guarantee effective indicators of ecosystem health at different spatial and time scales. However, estimating biodiversity from field observations might present difficulties related to costs and time needed. Moreover, a continuous data update for biodiversity monitoring purposes might be prohibitive. From this point of view, remote sensing represents a powerful tool since it allows to cover wide areas in a relatively low amount of time. One of the most common indicators of biodiversity is Shannon's entropy H′, which is strictly related to environmental heterogeneity, and thus to species diversity. However, Shannon's entropy might show drawbacks once applied to remote sensing data, since it considers relative abundances but it does not explicitly account for distances among pixels’ numerical values. In this paper we propose the use of Rao's Q applied to remotely sensed data, providing a straightforward R-package function to calculate it in 2D systems. We will introduce the theoretical rationale behind Rao's index and then provide applied examples based on the proposed R function. Original Source: Rocchini, D., Marcantonio, M., Ricotta, C. (2017). Measuring Rao's Q diversity index rom remote sensing: an open source solution. Ecological Indicators, 72: 234-238. [5years-IF: 3.649] DOI:10.1016/j.ecolind.2016.07.039 Full Article News
pe New EU ABS Regulation Workshops - Stockholm, Warsaw, Leiden, Budapest By www.eubon.eu Published On :: Sat, 10 Sep 2016 15:13:00 +0300 The EU is a party to the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilisation. The EU ABS Regulation1, which transposes into the EU legal order the compliance pillar of the Protocol, became applicable as of 12 October 2014. The principal obligations of the Regulation – i.e. Article 4 on due diligence, Article 7 on monitoring user compliance and Article 9 on checks on user compliance – will become applicable as of 12 October 2015. In this context it is important that those who utilise genetic resources (i.e. conduct research and development on the genetic and/or biological composition of genetic resources, including through the application of biotechnology) are aware of the obligations arising from the Regulation, and that they can take the necessary measures to ensure their activities are compliant. What's in it for you? The EU ABS Regulation workshop aims at providing the participants with knowledge about their obligations under the EU ABS Regulation and what they practically imply for their everyday work. In the first part of the workshop, the new legal framework will be explained, providing insight into the main provisions of the EU ABS Regulation. In the second part of the workshop, participants will have a chance to put the knowledge gained into practice through interactive case studies, based on real-life examples and realistic scenarios. The workshop should allow participants to better understand their obligations under the EU law, and to establish which steps they need to follow and which practical measures they should take when dealing with genetic resources originating from Parties to the Nagoya Protocol. Planning and location of the workshops: Feel free to apply for registration to one of the following workshops: 18 October: Stockholm 17 November: Warsaw 21 November: Leiden Date to be determined: Budapest The workshop is targeted at senior academics and experienced researchers conducting research and development on genetic resources who have an interest in gaining an essential understanding of the new legal framework in the EU, in view of the ABS Regulation becoming fully operational later this year. Registration page: http://www.euconf.eu/abs/en/registration/index.html Full Article News
pe Citizen science might be voluntary but results are not always open: Recommendations to improve data openness By www.eubon.eu Published On :: Thu, 29 Sep 2016 12:24:00 +0300 Being voluntary, citizen science work is often automatically assumed to also be openly available. Contrary to the expectations, however, a recent study of the datasets available from volunteers on the Global Biodiversity Information Facility (GBIF) prove to be among the most restrictive in how they can be used. There is a high demand for biodiversity observation data to inform conservation and environmental policy, and citizen scientists generate the vast majority of terrestrial biodiversity observations. The analysis on GBIF showed that citizen science datasets comprise 10% of datasets on GBIF, but actually account for the impressive 60% of all observations. Invaluable as a resource for conservationists and biodiversity scientists, however, these resources unfortunately often come with restrictions for re-use. Although the vast majority of citizen science datasets did not include a license statement, as a whole, they ranked low on the openness of their data. The assumption that voluntary data collection leads to data sharing is not only not reflecting the real situation, but also does not recognize the wishes and motivations of those who collect data, nor does it respects the crucial contributions of these data to long-term monitoring of biodiversity trends. In a recent commentary paper, published in the Journal of Applied Ecology, EU BON partners suggest ways to improve data openness. According to the researchers citizen scientists should be recognised in ways that correspond with their motivations, in addition its is advisable that organisations that manage these data should make their data sharing policies open and explicit. Original Research: Groom, Q., Weatherdon, L. & Geijzendorffer, I. (2016) Is citizen science an open science in the case of biodiversity observations? Journal of Applied Ecology. DOI: 10.1111/1365-2664.12767 Full Article News
pe The Future of the European Biodiversity Observation Network: 4th EU BON Roundtable By www.eubon.eu Published On :: Wed, 21 Dec 2016 10:11:00 +0200 The 4th EU BON roundtable took place on 17 November 2016 in the Museum für Naturkunde in Berlin. Focused on the topic "Pathways to sustainability for EU BONs network of collaborators and technical infrastructure" the 35 participants discussed key questions with regards to the sustainability of the EU BON network and products, and shared their rich expertise, coming from different backgrounds ranging from science to policy. The Roundtable brought together key European users and stakeholders, such as the European Environment Agency, UNEP GRID, and the GEO secretariat, including 27 different institutions and organisations, as well as European funded projects, infrastructures and networks that share the EU BON objectives of assembling biodiversity and ecosystem-related data and knowledge, such as Lifewatch, the European Citizen Science Association (ECSA), ECOPOTENTIAL, EKLIPSE and others. Credit: Florian Wetzel In her welcome address, Katrin Vohland, head of the Science Programme "Public Engagement with Science" and task lead for stakeholder engagement in EU BON explained that key lessons learnt are that: stakeholder identification may yield unexpected results as in the case of EU BON where next to scientifically based organisation less practitioners but more citizen scientists seem to become stakeholder; early and continuous connections are necessary, as for example to other EU initiatives and projects; target group specific communication avoiding acronyms helps; and the idea of teal organisations may support overcoming the limitations to make networks economically sustainable - which are important but non-monetary assets. While former Roundtables addressed European policy, citizen science and the link to practitioners, this final EU BON Stakeholder event discussed the future and sustainability of the European biodiversity observation network and its products and tools. Key questions for the participants were: How can the many different EU BON products be sustained and further developed after the project ends in May 2017? Which institutions will host the products in the future and what key products could be further developed by EU BON to meet European and global policy and research needs (e.g. for monitoring, reporting)? How can a European Biodiversity Network as a whole be sustained in order to serve as a central infrastructure and pool of expertise for generating biodiversity data and information on a European scale? Ideas and plans were developed to secure the sustainability and long term re-use of EU BON products. More information on the outcomes of the meeting can be found below in the minutes and the presentations given during the day. The report form the meeting was officially published in RIO Journal as a part of the dedicated EU BON outputs collection: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875 For further information please contact: Dr. Katrin Vohland, Museum für Naturkunde Berlin, Email: katrin.vohland@mfn-berlin.de Dr. Florian Wetzel, Museum für Naturkunde Berlin, Email: florian.wetzel@mfn-berlin.de Presentations from the meeting: 1. EU BON_RT_Katrin Vohland 2. Key achievements _ Christoph Häuser 3.1 EUBON Products_ Lauren Weatherdon 3.2 EU BON products and stakeholders_David Rose 4. EU BON and modelling tools_Bill Kunin 5. CS and EU BON tools_Bernat Claramunt 6. Businessplan_Sustainability_Dirk Schmeller 7 .EKLIPSE_EUBON_Carsten Nesshöfer-Dirk Schmeller 8. EEA - EEA_EU BON_Beate Werner 9. LifeWatch_Wouter Los_Christos Arvanitidis 10. Thoughts on Sustainability_Gary Geller 11. Biodiversity data, gaps and effors_Florian_Wetzel 12. EUBON-portal_Tim Robertson Full Article News
pe Setting temporal baselines for biodiversity could be an impediment for capturing the full impact of anthropogenic pressures By www.eubon.eu Published On :: Tue, 31 Jan 2017 13:42:00 +0200 Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity. The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures. With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures. The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses. Find out more in the original research paper: Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591 Full Article News
pe Latest in our RIO Collection: Guidelines for scholarly publishing of biodiversity data from Pensoft and EU BON By www.eubon.eu Published On :: Wed, 01 Mar 2017 17:43:00 +0200 While development and implementation of data publishing and sharing practices and tools have long been among the core activities of the academic publisher Pensoft, it is well-understood that as part of scholarly publishing, open data practices are also currently in transition, and hence, require a lot of collaborative and consistent efforts to establish. Based on Pensoft's experience, and elaborated and updated during the Framework Program 7 EU BON project, a new paper published in the EU BON dedicated collection in the open science journal Research Ideas and Outcomes (RIO), outlines policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data. Newly accumulated knowledge from large-scale international efforts, such as FORCE11 (Future of Research Communication and e-Scholarship), CODATA (The Committee on Data for Science and Technology), RDA (Research Data Alliance) and others, is also included in the Guidelines. The present paper discusses some general concepts, including a definition of datasets, incentives to publish data and licences for data publishing. Furthermore, it defines and compares several routes for data publishing, namely: providing supplementary files to research articles; uploading them on specialised open data repositories, where they are linked to the research article; publishing standalone data papers; or making use of integrated narrative and data publishing through online import/download of data into/from manuscripts, such as the workflow provided by the Biodiversity Data Journal. Among the guidelines, there are also comprehensive instructions on preparation and peer review of data intended for publication. Although currently available for journals using the developed by Pensoft journal publishing platform ARPHA, these strategies and guidelines could be of use for anyone interested in biodiversity data publishing. Apart from paving the way for a whole new approach in data publishing, the present paper is also a fine example of science done in the open, having been published along with its two pre-submission public peer reviews. The reviews by Drs. Robert Mesibov and Florian Wetzel are both citable via their own Digital Object Identifiers (DOIs). ### Original source: Penev L, Mietchen D, Chavan V, Hagedorn G, Smith V, Shotton D, Ó Tuama É, Senderov V, Georgiev T, Stoev P, Groom Q, Remsen D, Edmunds S (2017) Strategies and guidelines for scholarly publishing of biodiversity data. Research Ideas and Outcomes 3: e12431. https://doi.org/10.3897/rio.3.e12431 Full Article News
pe EEA Report: Climate change, impacts and vulnerability in Europe 2016 By www.eubon.eu Published On :: Mon, 06 Mar 2017 11:21:00 +0200 Europe’s regions are facing rising sea levels and more extreme weather, such as more frequent and more intense heatwaves, flooding, droughts and storms due to climate change, according to the latest European Environment Agency report published on 25 Jan 2017. The report assesses the latest trends and projections on climate change and its impacts across Europe and finds that better and more flexible adaptation strategies, policies and measures will be crucial to lessen these impacts. Find a summary of the report's Key Findings, or download the full report. Full Article News
pe New EU BON Forum Paper discusses legitimacy of reusing images from scientific papers addressed By www.eubon.eu Published On :: Fri, 17 Mar 2017 11:24:00 +0200 The discipline of taxonomy is highly reliant on previously published photographs, drawings and other images as biodiversity data. Inspired by the uncertainty among taxonomists, a team, representing both taxonomists and experts in rights and copyright law, has traced the role and relevance of copyright when it comes to images with scientific value. Their discussion and conclusions are published in the latest paper added in the EU BON Collection in the open science journal Research Ideas and Outcomes (RIO). Taxonomic papers, by definition, cite a large number of previous publications, for instance, when comparing a new species to closely related ones that have already been described. Often it is necessary to use images to demonstrate characteristic traits and morphological differences or similarities. In this role, the images are best seen as biodiversity data rather than artwork. According to the authors, this puts them outside the scope, purposes and principles of Copyright. Moreover, such images are most useful when they are presented in a standardized fashion, and lack the artistic creativity that would otherwise make them 'copyrightable works'. "It follows that most images found in taxonomic literature can be re-used for research or many other purposes without seeking permission, regardless of any copyright declaration," says Prof. David J. Patterson, affiliated with both Plazi and the University of Sydney. Nonetheless, the authors point out that, "in observance of ethical and scholarly standards, re-users are expected to cite the author and original source of any image that they use." Such practice is "demanded by the conventions of scholarship, not by legal obligation," they add. However, the authors underline that there are actual copyrightable visuals, which might also make their way to a scientific paper. These include wildlife photographs, drawings and artwork produced in a distinctive individual form and intended for other than comparative purposes, as well as collections of images, qualifiable as databases in the sense of the European Protection of Databases directive. In their paper, the scientists also provide an updated version of the Blue List, originally compiled in 2014 and comprising the copyright exemptions applicable to taxonomic works. In their Extended Blue List, the authors expand the list to include five extra items relating specifically to images. "Egloff, Agosti, et al. make the compelling argument that taxonomic images, as highly standardized 'references for identification of known biodiversity,' by necessity, lack sufficient creativity to qualify for copyright. Their contention that 'parameters of lighting, optical and specimen orientation' in biological imaging must be consistent for comparative purposes underscores the relevance of the merger doctrine for photographic works created specifically as scientific data," comments on the publication Ms. Gail Clement, Head of Research Services at the Caltech Library. "In these cases, the idea and expression are the same and the creator exercises no discretion in complying with an established convention. This paper is an important contribution to the literature on property interests in scientific research data - an essential framing question for legal interoperability of research data," she adds. ### Original source: Egloff W, Agosti D, Kishor P, Patterson D, Miller J (2017) Copyright and the Use of Images as Biodiversity Data. Research Ideas and Outcomes 3: e12502. https://doi.org/10.3897/rio.3.e12502 Full Article News
pe How Ecosystem and Biodiversity data and knowledge can support the GEO objectives: EU BON’s session at the European GEO Workshop By www.eubon.eu Published On :: Thu, 29 Jun 2017 14:38:00 +0300 The 11th European Projects GEO Workshop took place between 19-21 June 2017, in Helsinki, Finland, bringing together European stakeholders interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS). Alongside the plenary (see presentations here), the conference featured 20 sessions looking at various aspects GEOSS, its objectives and their implementation. Among those EU BON took part in a dedicated session titled ‘How Ecosystem and Biodiversity data and knowledge can support the GEO objectives’, alongside fellow projects and initiatives, and associated partners ECOPOTENTIAL, LTER-Europe, GLOBIS-B, EKLIPSE and ENEON. Credit: F. Wetzel The session aimed to inform about recent developments of relevant projects that focus on Ecosystems and Biodiversity and also outline how the generated data and knowledge can support the GEO objectives and inform relevant policies on a European and global scale. .@ft_wetzel explaining the @EUBON1 approach to mobilising linked and standardised data #EGW2017 #citizenscience #harmonisation #biodiversity pic.twitter.com/jJJ5jADAzG — Scent (@SCENT_EU) June 20, 2017 EU BON, as a now completed project, opened the session by presenting its major products in particular the European Biodiversity Portal and how current and future projects can build on the outcomes achieved. Overall, the session gave the opportunity to learn about the different approaches of selected EU-projects that address the mobilization, integration and analysis of biodiversity and ecosystem data, their current achievements and existing barriers. Here are some of the Key Messages that emerged from the session: For biodiversity and ecosystem approaches, European level efforts are needed to achieve comprehensive data coverage and full open access, especially for in situ data integration. Existing European-level data portals and information platforms need to be sustained and considered as integration points for national and local data hubs. Systematic approaches for biodiversity are needed, which means linking biotic and abiotic data and improving harmonization efforts for the whole data cycle/ workflows from data collection, analysis and dissemination for different disciplines (SBAs). Essential (Biodiversity) Variables (EBVs) are a key concept / framework especially for monitoring / long-term observations that should be applied for all available biodiversity/ecosystem data fields. Use examples from existing projects and networks as successful blueprints for bottom-up/user-driven approaches in GEOSS that relate to knowledge and user needs at the local scale. Full Article News
pe ECOPOTENTIAL Workshop "SPACED: Using Earth Observations to Protect Natural Landscapes" By www.eubon.eu Published On :: Thu, 07 Dec 2017 10:33:00 +0200 The ECOPOTENTIAL H2020 project, focusing its activities on blending Earth Observations from remote sensing, field measurements, data analysis and modeling of current and future ecosystem conditions and services, is organizing this workshop in Brussels on the 10th of January 2018, from 9.00 to 17:30. The main objective of the workshop is to prospect the state-of-the-art of Remote Sensing as a Sentinel tool to monitor, characterize and understand the state, ongoing changes and effectiveness of conservation and management actions of natural landscapes and to facilitate an open debate among scientists and the involved Institutions. This workshop is part of the multiple events organized by the ECOPOTENTIAL Project on the week of 9th-12th of January 2018, starting on Jan 9th with the opening of the photo-exhibition with the same title, on display at the European Parliament. Registration: http://ves.cat/emIm Agenda: http://www.ecopotential-project.eu/images/ecopotential/img_news/Spaced-workshop-AGENDA-Jan-10-2018.pdf Event's website: http://www.ecopotential-project.eu/2015-08-19-15-19-05/2015-10-16-13-48-29/205-spaced-using-earth-observations-to-protect-natural-landscapes.html Full Article News
pe New EU BON research reviews the most relevant sources for European biodiversity observation data to identifying important barriers and fill gaps By www.eubon.eu Published On :: Thu, 08 Mar 2018 18:45:00 +0200 Recently published in Biological Conservation, the new EU BON supported paper is titled "Unlocking biodiversity data: Prioritization and filling the gaps in biodiversity observation data in Europe". Abstract: Large quantities of biodiversity data are required to assess the current status of species, to identify drivers of population and distributional change, and to predict changes to biodiversity under future scenarios. Nevertheless, currently-available data are often not well-suited to these purposes. To highlight existing gaps, we assess the availability of species observation data in Europe, their geographic and temporal range, and their quality. We do so by reviewing the most relevant sources for European biodiversity observation data, and identifying important barriers to filling gaps. We suggest strategies, tools and frameworks to continue to fill these gaps, in addition to producing data suitable for generating Essential Biodiversity Variables (EBVs). Our review of data sources shows that only around a third of data-providers provide unrestricted data access. Particularly large geographic gaps exist in Eastern European countries and many datasets are not suitable for generating EBVs due to the absence of long-term data. We highlight examples built on recent experiences from large data integrators, publishers and networks that help to efficiently improve data availability, adopt open science principles and close existing data gaps. Future strategies must urgently consider the needs of relevant data stakeholders, particularly science- and policy-related needs, and provide incentives for data-providers. Hence, sustainable, longterm infrastructures and a European biodiversity network are needed to provide such efficient workflows, incentives for data-provision and tools. Find the paper at: https://doi.org/10.1016/j.biocon.2017.12.024 Full Article News