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Post-translational modifications in the Protein Data Bank

Proteins frequently undergo covalent modification at the post-translational level, which involves the covalent attachment of chemical groups onto amino acids. This can entail the singular or multiple addition of small groups, such as phosphorylation; long-chain modifications, such as glycosylation; small proteins, such as ubiquitination; as well as the interconversion of chemical groups, such as the formation of pyroglutamic acid. These post-translational modifications (PTMs) are essential for the normal functioning of cells, as they can alter the physicochemical properties of amino acids and therefore influence enzymatic activity, protein localization, protein–protein interactions and protein stability. Despite their inherent importance, accurately depicting PTMs in experimental studies of protein structures often poses a challenge. This review highlights the role of PTMs in protein structures, as well as the prevalence of PTMs in the Protein Data Bank, directing the reader to accurately built examples suitable for use as a modelling reference.




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Refinement of X-ray and electron diffraction crystal structures using analytical Fourier transforms of Slater-type atomic wavefunctions in Olex2

An implementation of Slater-type spherical scattering factors for X-ray and electron diffraction for elements in the range Z = 1–103 is presented within the software Olex2. Both high- and low-angle Fourier behaviour of atomic electron density and electrostatic potential can thus be addressed, in contrast to the limited flexibility of the four Gaussian plus constant descriptions which are currently the most widely used method for calculating atomic scattering factors during refinement. The implementation presented here accommodates the increasing complexity of the electronic structure of heavier elements by using complete atomic wavefunctions without any interpolation between precalculated tables or intermediate fitting functions. Atomic wavefunctions for singly charged ions are implemented and made accessible, and these show drastic changes in electron diffraction scattering factors compared with the neutral atom. A comparison between the two different spherical models of neutral atoms is presented as an example for four different kinds of X-ray and two electron diffraction structures, and comparisons of refinement results using the existing diffraction data are discussed. A systematic but slight improvement in R values and residual densities can be observed when using the new scattering factors, and this is discussed relative to effects on the atomic displacement parameters and atomic positions, which are prominent near the heavier elements in a structure.




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FilmWeek: ‘Demon Slayer the Movie: Mugen Train,’ Street Gang: How We Got to Sesame Street,’ ‘Together Together’ And More

Archival still from the documentary "Street Gang: How We Got to Sesame Street"; Credit: HBO

FilmWeek Marquee

Larry Mantle and KPCC film critics Claudia Puig and Charles Solomon review this weekend’s new movie releases.

This content is from Southern California Public Radio. View the original story at SCPR.org.




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USGS Releases New Topographic Maps for Puerto Rico and the U.S. Virgin Islands - Updated Maps for Essential Needs

The USGS is pleased to announce the release of new US Topo maps for Puerto Rico and the U.S. Virgin Islands. These updated topographic maps offer valuable, current geographic information for residents, visitors, and professionals, providing essential resources for communities in these areas.




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Asian and Pacific Islanders Remain Largely Invisible In Popular Film, Study Shows

Actor Dwayne Johnson (L) and Simone Alexandra Johnson attend the People's Choice Awards 2017 at Microsoft Theater on January 18, 2017 in Los Angeles, California. ; Credit: Christopher Polk

James Chow | FilmWeek

When Dwayne "The Rock" Johnson debuted his Hollywood persona in World Wrestling Entertainment in 2003, he was two years removed from his first successful protagonist role in "The Scorpion King" and on the heels of more film success with roles in "The Rundown" and "Walking Tall." 

Little did anyone foresee that "Hollywood" Rock would buoy the overall representation for Asian and Pacific Islanders in popular film for the next 20 years.

Last week, the USC Annenberg Inclusion Initiative released a report documenting the prevalence of Asian and Pacific Islanders both on-and off-screen across the top-grossing films each year from 2007 to 2019.  Of the 1,300 films examined, only 44 featured API actors playing lead roles, nearly a third of which were played by Johnson. 

The report offers more staggering statistics:

  • In 2019, over a quarter of API characters in the top-grossing films died. Most died by drowning, explosions, stabbing or suicides

  • Of the over 51,000 speaking characters in the 1,300 films examined, only 6% were Asian, Asian American or Native Hawaiian/Pacific Islanders

  • Only 50 of the 1,447 directors in the 1,300 films examined were of API heritage.

  • In 2019, 67% of API characters played stereotyped roles

The release of this report comes at a time of rising anti-Asian hate crimes nationally, and the authors of the report believe the portrayal of Asian and Pacific Islanders in mass media contributes to that. Today on FilmWeek, we delve into the study's findings and discuss the history of API filmmakers and actors in Hollywood.

Guests: 

Nancy Wang Yuen, professor of sociology at Biola University in La Mirada; she is co-author of “The Prevalence and Portrayal of Asian and Pacific Islanders Across 1,300 Popular Films”; she tweets @nancywyeun

Justin Chang, film critic for the Los Angeles Times and NPR’s Fresh Air; he tweets @JustinCChang

This content is from Southern California Public Radio. View the original story at SCPR.org.




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Hundreds Of Companies Call For U.S. To Slash Carbon Emissions

Tim Cook, chief executive officer of Apple Inc., speaks during an event in 2018. Apple is one of 310 companies calling on the Biden administration to slash carbon emissions.; Credit: David Paul Morris/Bloomberg via Getty Images

Eric McDaniel | NPR

More than 300 businesses have signed an open letter calling on the Biden administration to reduce greenhouse gas emissions in the United States to at least half of 2005 levels by 2030. That would nearly double a previous target set by former President Barack Obama in 2015, who pledged a 25 to 28% reduction by 2025.

The United States is not currently on track to meet either goal.

The signatories include some of largest companies in the United States, including Walmart, Apple, McDonald's and Starbucks. "A bold 2030 target is needed to catalyze a zero-emissions future, spur a robust economic recovery, create millions of well-paying jobs, and allow the U.S. to 'build back better' from the pandemic," the letter said, echoing the president's economic recovery slogan.

A 50% reduction target would put the Biden administration in line with what groups such as the United Nations and National Academies of Science say is necessary to mitigate the worst impacts of climate change.

In a March statement calling for the same reductions target, the environmental advocacy group Natural Resources Defense Council said such a plan would "help pull the country out of the pandemic-induced recession by putting millions of Americans to work" and inspire more ambitious international climate action ahead of a major United Nations climate conference this November.

Like President Joe Biden's campaign promise to guide the United States to carbon-neutrality by the middle of the century, a 50% emissions reduction target would require steeper emissions cuts than the country has ever achieved.

In 2019, greenhouse gas emissions were approximately 13% below 2005 levels, a decrease of just 1.8% from the previous year.


The Biden administration has identified climate action as one of its top four priorities and has named prominent, experienced Washington insiders, including former Secretary of State John Kerry and former EPA administrator Gina McCarthy, to oversee climate policy efforts at the White House.

As NPR's Danielle Kurtzleben has previously reported, activists on the left are cautiously optimistic about the administration's climate plan after expressing doubts about Biden's climate record during the Democratic primary.

Sunrise Movement, a youth-led climate group that champions the Green New Deal, gave candidate Biden's initial climate plan an "F" grade. Now, the group's executive director Varshini Prakash is publicly celebrating his administration's latest climate-focused $2 trillion infrastructure bill — including its commitment to spend 40% of the infrastructure plan's money on disadvantaged communities and launch a jobs program called the Civilian Climate Corps.

New York Democratic Rep. Alexandria Ocasio-Cortez told NPR earlier this month that she feels that Biden has ultimately come around to the side of progressives on climate issues. She said: "As much as I think some parts of the party try to avoid saying 'Green New Deal' and really dance around and try to not use that term, ultimately, the framework I think has been adopted."

The emphasis on climate comes as a sharp departure from the Trump administration, which withdrew the United States from the Paris Agreement and set no emissions reductions targets.

Signatories to the Paris deal, which Biden rejoined on the day he was sworn into office, are all required to set these targets — formally known as nationally determined contributions, or NDCs.

The agreement also encourages nations to revise their goals every five years, in hopes that the proposals become more ambitious as the cost of environmental reform goes down.

Since the Paris agreement was first agreed to in 2015, though, just fifty of the deal's nearly 200 signatories have submitted revised targets. A recent U.N. analysis of international climate action found that many countries were doing far too little to reduce emissions for the world to avoid the worst effects of climate change.

So far, the White House has not indicated exactly how ambitious their plan will be. An announcement is expected in the coming days as the White House prepares for its Earth Day climate summit with world leaders, scheduled for Thursday, April 22.

Copyright 2021 NPR. To see more, visit https://www.npr.org.

This content is from Southern California Public Radio. View the original story at SCPR.org.




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Daniel Kahnemans Thinking, Fast and Slow Wins Best Book Award From Academies - Milwaukee Journal Sentinel, Slate Magazine, and WGBH/NOVA Also Take Top Prizes in Awards 10th Year

Recipients of the 10th annual Communication Awards were announced today by the National Academy of Sciences, National Academy of Engineering, and Institute of Medicine.




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We Stand Ready to Put Landmark Legislation into Action, Say National Academies’ Presidents

Historic legislation has been enacted to boost U.S. competitiveness and security, spur innovation, and make real progress on climate change and human health, said the National Academies’ presidents in a statement. “The National Academies stand ready to mobilize the broader science, engineering, and medical and health communities to help inform and implement solutions.”




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Cybersecurity Awareness Month needs a radical overhaul – it needs legislation

Despite their benefits, awareness campaigns alone are not enough to encourage widespread adoption of cybersecurity best practices




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Quishing attacks are targeting electric car owners: Here’s how to slam on the brakes

Ever alert to fresh money-making opportunities, fraudsters are blending physical and digital threats to steal drivers’ payment details




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TikTok slashes hundreds of jobs in AI shift

Social media platform TikTok said it will slash hundreds of jobs, with a significant number of employees in Malaysia expected to be affected, as the company shifts to AI-assisted content moderation. Less than 500 jobs in Malaysia are expected to be affected by the move.




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Microsoft says new computing service for chemicals can slash R&D time

The new offering uses a combination of existing quantum computers, artificial intelligence and conventional high-performance computing systems.




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Tesla charging technology put on fast track to become US standard

Tesla's charging technology has been gathering momentum for weeks. Volvo Car on Tuesday joined General Motors, Ford and Rivian in embracing Tesla's charging design, shunning earlier efforts by the Biden administration to make the Combined Charging System (CCS) the dominant charging standard in the United States.




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Good, clean and healthy: Are you mislabeling or misrepresenting your products?

A cursory glance at grocery store shelves confirms: meeting consumer expectations for “clean” food labeling is here to stay.




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New snack brand Havoc drops on Nowhere Island, Ontario

Havoc's new lineup includes Fiery Lime Flavored Rolled Tortilla Chips, Smoky Nacho Twisted Corn Chips, and Bulgogi Blaze Flavored Potato Chips.




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IAPMO commends Washington State Legislature’s passage of bill requiring testing water for lead in schools and daycare facilities

Lead contamination in drinking water poses serious health risks, and even low levels of lead exposure can cause permanent cognitive, academic and behavioral difficulties in children.




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CO2Meter launches GasLab® Industrial Fixed Gas Detector Series

The industrial gas safety series will further provide partners and customers with the ability to protect employees and their facilities when working near both toxic and hazardous gases.




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Worker dies from stone slab fall due to company's failure to follow safety standards

Employees were using a forklift to take stone slabs off a storage rack when the slab became unsecured and struck the worker. OSHA investigators find it could have been prevented. 




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POWERADE Island Burst and Strawberry Smash Zero

POWERADE announced the addition of two new flavors to its sports drink portfolio: Island Burst and Strawberry Smash Zero.




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Perricone Farms acquires Natalie’s Orchid Island Juice Co.

Perricone Farms announced its acquisition of Natalie’s Orchid Island Juice Co. The merger unites two high-quality, trusted names in the juice industry, strengthens both brands, and enhances the ability to serve customers with excellence in quality and customer service coast-to-coast, it says.




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Legislation, sustainability measures prompt shifts to caps and closures

As plastic caps and closures rise in demand, companies continue to innovate, improving on the performance and sustainability of beverage packaging, driving more adoption of recyclability and reusability.




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Retta Slavik Chandler Featured in Marquis Who's Who Millennium Magazine

Retta Slavik Chandler earns prominent placement in Millennium Magazine's Sixteenth Edition




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Marquis Who's Who Honors Patrick Slade Sartain, NRP, for Expertise in Emergency Services

Patrick Slade Sartain, NRP, is a distinguished expert in emergency medicine and lifesaving services




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Marquis Who's Who Honors David G. Anderson for Expertise in Education, Government, and Legislative Relations

David G. Anderson is lauded for his distinguished tenure in education, public service, and political engagement




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Blue Faery Continues Its Love Your Liver Campaign During Asian American and Pacific Islander Heritage Month

Blue Faery announces its annual Love Your Liver campaign will continue in May 2024. This will be the third consecutive year of this life-saving, award-winning, culturally and linguistically relevant program.




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KRYSTAL SLAMS INTO MARCH WITH SLAM DUNK DEALS

Want to be a VIP? Join Club Krystal for the inside scoop




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Marquis Who's Who Honors Elizabeth A. Sargent, FASLA, for Expertise in Landscape Architecture

Elizabeth A. Sargent, FASLA, celebrated for over 30 years in historical landscape architecture and design




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WebCE® Now Offers Insurance CE Courses for U.S. Virgin Islands

New U.S. Virgin Islands Insurance CE Requirements Can be Satisfied Through WebCE




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Marquis Who's Who Honors Marlon J. Tesla for Expertise in Engineering and Entrepreneurship

Marlon J. Tesla is honored for his achievements in subsea engineering as the president of Tesla Solutions Inc.




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Queens County Locksmith: Your Trusted Partner for Comprehensive Locksmith, Garage Door & Exterior Door Solutions in the NYC metropolitan area and all of Nassau County Long Island

Queens County Locksmith, a fully licensed and insured locksmith, garage door & door company servicing the New York City metro area and all of Nassau County Long Island, proudly announces its comprehensive range of services




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Dr. Ray Islam Displays Excellence in Education and Technology

Dr. Ray Islam serves as an adjunct professor at George Mason University




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Robert T. Slater III, MD, MPH, ABFM, ABOIM, Celebrated for Expertise in Health Care and Education

Robert T. Slater III, MD, MPH, ABFM, ABOIM, is an associate professor at the University of the Incarnate Word




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Kelly Montanye of Bethpage Equestrian Center Celebrates Three Consecutive Wins in Long Island's Business Hall of Fame

Kelly Montanye of Bethpage Equestrian Center Celebrates Three Consecutive Wins in Long Island's Business Hall of Fame




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WAWG applauds movement of 2024 Farm Bill legislation

We are encouraged to see movement on this critical piece of legislation




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The Debt Slaves Of The Student Loan Empire

New Book Exposes Dysfunction of Student Loan System




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Debut Mystery Novel "The Phantom Wore Red Pajamas" Thrills with Hilton Head Island Intrigue

South Carolina author Joan Doucette's debut novel, "The Phantom Wore Red Pajamas," hit bookstores this week, promising to captivate mystery lovers with its unique blend of suspense, humor, and Lowcountry charm.




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Miroslav Lozinsky, MBA Lauded for Excellence in Data Management

Miroslav Lozinsky lends years of expertise to his work with Allight Solutions LLC




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SLAYYY Hair Launches as the Luxurious Alternative to Toxic Traditional Synthetic Braiding Hair for Healthier and Scalp-Friendly Hair

Internationally acclaimed celebrity event designer and Beauty Founder Diann Valentine proudly introduces SLAYYY Hair, a revolutionary hair brand committed to providing safer and healthier alternative to toxic traditional synthetic braiding hair.




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Peters: $1.5 Spending Bill Is Latest Example of Congress Passing Legislation Without Knowing What Is Inside It

Spending Bill Contained At Least Two Anti-Second Amendment Provisions




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Minnesota Legislators Seek Statewide Elimination of Outdated and Burdensome Minimum Parking Requirements

In Haltom City, similar legislative action would help reoccupy older vacant buildings.




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BrainVentures CEO Wonhoi Kim: "We Focus on Providing Competitiveness to the Global Webtoon Market through AI Solutions for Translation and Localization."

BrainVentures, founded in 2020, uses AI to automate webtoon translation and typesetting, cutting costs by 60%. Expanding to Japan and North America, the company partners with major platforms to improve global competitiveness in the webtoon industry.




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Slaterock Automation, A Digital Marketing Agency, Brings the Power of Artificial Intelligence to Small Businesses

Slaterock uses functional web design, ai SEO, and business automation to power small businesses and sales teams




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Teslas need extra paint protection - Ceramic Coating and PPF is the answer

Revolutionize Your Tesla's Shine with Transhine: The Premier Paint Protection Professionals in the Los Angeles Area




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Experience Aero Wheel Covers: Your Tesla's Secret Weapon to Stand Out

Tesla Model Y owners, do you want your vehicle to stand out? Now, there's a secret weapon that can make your Tesla stand out from the crowd. Experience TESERY's latest Aero Wheel Covers and make your Tesla truly unique!




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TESEVO Team: Industry Elites Converge to Build Exceptional Tesla Accessories Brand

TESEVO Unveils Elite Team to Revolutionize Tesla Model Y and Model 3 Accessories Market




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Beyond Our Gates Foundation of Kiawah and Seabrook Islands Grants $300,000 to 16 Charleston Nonprofits

The Grant Honors College of Charleston's First Black Woman Graduate, Linda Gadson




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1 AI Stock May Be Worth More Than Apple, Microsoft, Amazon, and Tesla Combined by 2030, According to a Wall Street Analyst




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These Stocks Are Moving the Most Today: Tesla, Rivian, Spirit Airlines, Spotify, Cava, Rocket Lab, and More




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Tesla Stock Rises. Elon Musk Will Lead New Government Department for Trump.




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Tesla’s meme-like stock surge leaves Wall Street feeling wary