methods

[ L.1310 (07/17) ] - Energy efficiency metrics and measurement methods for telecommunication equipment

Energy efficiency metrics and measurement methods for telecommunication equipment




methods

Multibody Dynamics Computational Methods and Applications

Location: Electronic Resource- 




methods

Intelligent Numerical Methods II: Applications to Multivariate Fractional Calculus

Location: Electronic Resource- 




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Web Services, Formal Methods, and Behavioral Types 11th International Workshop, WS-FM 2014, Eindhoven, The Netherlands, September 11-12, 2014, and 12th International Workshop, WS-FM/BEAT 2015, Madrid, Spain, September 4-5, 2015, Revised Selected Papers

Location: Electronic Resource- 




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Finite Element Methods in Incompressible, Adiabatic, and Compressible Flows From Fundamental Concepts to Applications

Location: Electronic Resource- 




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Long non-coding RNAs : methods and protocols

Location: Sciences Library Library- QH506.M45 v.1402




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Proteomics in systems biology : methods and protocols

Location: Sciences Library Library- QH506.M45 v.1394




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Cell Reprogramming Methods and Protocols

Location: Electronic Resource- 




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The BAM Complex Methods and Protocols

Location: Electronic Resource- 




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Methods in Mouse Atherosclerosis

Location: Electronic Resource- 




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TGF-β Signaling Methods and Protocols

Location: Electronic Resource- 




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Induced Pluripotent Stem (iPS) Cells Methods and Protocols

Location: Electronic Resource- 




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Receptor and Ion Channel Detection in the Brain Methods and Protocols

Location: Electronic Resource- 




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Cytoskeleton Methods and Protocols Methods and Protocols

Location: Electronic Resource- 




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Yeast Cytokinesis Methods and Protocols

Location: Electronic Resource- 




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P-Type ATPases Methods and Protocols

Location: Electronic Resource- 




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2-D PAGE Map Analysis Methods and Protocols

Location: Electronic Resource- 




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Quantitative biomedical optics : theory, methods, and applications

Location: Engineering Library- R857.O6B54 2016




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Equity Derivatives and Hybrids Markets, Models and Methods

Location: Electronic Resource- 




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Optimization Methods for Gas and Power Markets Theory and Cases

Location: Electronic Resource- 




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Vaccine Design Methods and Protocols, Volume 2: Vaccines for Veterinary Diseases

Location: Electronic Resource- 




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Biotechnology of Plant Secondary Metabolism Methods and Protocols

Location: Electronic Resource- 




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Breast Cancer Methods and Protocols

Location: Electronic Resource- 




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Optogenetics Methods and Protocols

Location: Electronic Resource- 




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Bacterial Therapy of Cancer Methods and Protocols

Location: Electronic Resource- 




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Statistical Genomics Methods and Protocols

Location: Electronic Resource- 




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Programmed Cell Death Methods and Protocols

Location: Electronic Resource- 




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Apoptosis Methods in Toxicology

Location: Electronic Resource- 




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RNA-Protein Complexes and Interactions Methods and Protocols

Location: Electronic Resource- 




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Plant Nitric Oxide Methods and Protocols

Location: Electronic Resource- 




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Hydrocarbon and Lipid Microbiology Protocols Single-Cell and Single-Molecule Methods

Location: Electronic Resource- 




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Statistical methods for recommender systems

Location: Engineering Library- QA76.76.E95A395 2016




methods

4 Methods to save Outlook Search Queries for reuse

For my job, I regularly need to do the same or very similar search queries in Outlook.

Some queries are a bit more complex so redoing them each time is a bit cumbersome.

Is there a way to save my Search queries so I can reuse them later rather than needing to redo them each time?




methods

Health: Dr. Joel Fuhrman, Nutritional and Natural Methods

Health: Dr. Joel Fuhrman, Nutritional and Natural Methods




methods

Insights Into Protein Engineering: Methods and Applications

Protein engineering is a powerful biotechnological process that focuses on creating new enzymes or proteins and improving the functions of existing ones by manipulating their natural macromolecular architecture.1?



  • The Scientist University

methods

Water purification methods

Initially thought of this in the context of a camping trip, but now also wondering about home safety purposes. What's the latest on ensuring that water is drinkable/potable and won't kill you?

•Iodine, sure, but what are the limitations? How much water per tablet can it purify?

•Boiling? To what temperature, for how long? Which types of microbe is it effective against?

•I know next to nothing about filters/osmosis.

•As far as I know, basically all of the above are for bacteria only. Which is good and all, but what if the water has chemical toxins instead of just biological? (Unlikely for a camping trip, I know, but somewhat more plausible when it comes to, say, well-water for a house.) Is there anything that works then? How to even tell if this is the case?




methods

The Best Way to Remove Coffee and Tea Stains from Mugs: Foolproof Methods Revealed

Discover simple yet effective methods to remove coffee and tea stains from mugs, maintaining their shine and cleanliness. Our article offers practical steps and household products you can use, helping you enjoy your beverages stain-free. Goodbye, stubborn stains!

The post The Best Way to Remove Coffee and Tea Stains from Mugs: Foolproof Methods Revealed appeared first on Unclutterer.




methods

Fluorescence assay for simultaneous quantification of CFTR ion-channel function and plasma membrane proximity [Methods and Resources]

The cystic fibrosis transmembrane conductance regulator (CFTR) is a plasma membrane anion channel that plays a key role in controlling transepithelial fluid movement. Excessive activation results in intestinal fluid loss during secretory diarrheas, whereas CFTR mutations underlie cystic fibrosis (CF). Anion permeability depends both on how well CFTR channels work (permeation/gating) and on how many are present at the membrane. Recently, treatments with two drug classes targeting CFTR—one boosting ion-channel function (potentiators) and the other increasing plasma membrane density (correctors)—have provided significant health benefits to CF patients. Here, we present an image-based fluorescence assay that can rapidly and simultaneously estimate both CFTR ion-channel function and the protein's proximity to the membrane. We monitor F508del-CFTR, the most common CF-causing variant, and confirm rescue by low temperature, CFTR-targeting drugs and second-site revertant mutation R1070W. In addition, we characterize a panel of 62 CF-causing mutations. Our measurements correlate well with published data (electrophysiology and biochemistry), further confirming validity of the assay. Finally, we profile effects of acute treatment with approved potentiator drug VX-770 on the rare-mutation panel. Mapping the potentiation profile on CFTR structures raises mechanistic hypotheses on drug action, suggesting that VX-770 might allow an open-channel conformation with an alternative arrangement of domain interfaces. The assay is a valuable tool for investigation of CFTR molecular mechanisms, allowing accurate inferences on gating/permeation. In addition, by providing a two-dimensional characterization of the CFTR protein, it could better inform development of single-drug and precision therapies addressing the root cause of CF disease.




methods

Reply to Sysel et al.: Comment on the importance of using nitric oxide gas in the synthesis of nitrosylcobalamin and ICH-validated methods to assess purity and stability [Letters to the Editor]

In their comment (1) on our publication (2), the authors make two points: (i) they raise concerns about the possible effect of residual NONOate in our study, and (ii) they promote nitrosylcobalamin (NOCbl) supplied by their own company. Both points lack merit for the following reasons. The authors make the astonishing claim that the spectra of nitric oxide (NO•) and cobalamins overlap. Unlike NO•, cobalamin absorbs in the visible region, permitting unequivocal spectral assignment of NOCbl as reported (3). We demonstrated that whereas NOCbl is highly unstable in solution, it is stabilized by the B12 trafficking protein CblC. So even if present, residual NONOate (which is unstable at neutral pH and is removed during the work-up (3)) could not account for the observed difference.The authors then misrepresent our synthetic method, claiming that anaerobic conditions were used to generate nitrocobalamin (NO2Cbl), which results in the transient formation of NOCbl. We synthesized NO2Cbl aerobically using nitrite as described (4); NOCbl is not an intermediate in this ligand exchange reaction. The aerobic instability of NOCbl has been rigorously described by inorganic chemists (3, 5) and raises obvious questions about its purported biological effects as exemplified by the authors' own 2003 JBC publication, which was later withdrawn.As to promoting NOCbl from their company, the authors refer to a synthetic route from a mixture of NO• gas and aquocobalamin. The authors' method (6) has been described as “dubious” by chemists (5). Whereas DEAE NONOate used in our method is widely known as an NO• donor,...




methods

Comment on the importance of using nitric oxide gas in the synthesis of nitrosylcobalamin and ICH-validated methods to assess purity and stability [Letters to the Editor]

After a thorough read of this paper (1), we wish to clarify that the authors' anaerobic method of synthesis for the production of nitrocobalamin results in the transient formation of nitrosylcobalamin, an unstable intermediate upon exposure to air. We concur that the authors' method results in the production of nitrocobalamin based on the UV-visible data as shown. The authors' adapted anaerobic method consists of mixing hydroxocobalamin hydrochloride with diethylamine NONOate diethylammonium salt in aqueous solution. Of concern, the UV spectrum of nitric oxide overlaps that of all cobalamin species under anaerobic conditions, making any assignments of the binding of nitric oxide to hydroxocobalamin suspect (2). Additionally, the use of acetone to precipitate the authors' product causes precipitation of diethylamine NONOate, resulting in an impure product. As a result, its utility for drawing experimental conclusions is faulty.The product from the authors' anaerobic synthetic method has not been assessed for purity, and the synthetic method itself has not been validated using a stability-indicating method as required by the International Conference on Harmonization (ICH) (ICH Q2B, Validation of Analytical Procedures) methodology, which is a hallmark for analytical characterization. Our nitrosylcobalamin synthesis involves reacting nitric oxide gas with hydroxocobalamin acetate as a heterogeneous mixture in a non-electron-donating solvent followed by rotary evaporation. Our nitrosylcobalamin product is stable in air, releases nitric oxide gas in situ (3), and meets ICH stability guidelines (4). Additionally, our nitrosylcobalamin product demonstrates biological activity, which has not been observed for nitrocobalamin (3, 5).




methods

Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics

William M. Old
Oct 1, 2005; 4:1487-1502
Research




methods

Cybersecurity Series: Exploring Methods of Internet Censorship and Control





methods

Error analysis of second-order local time integration methods for discontinuous Galerkin discretizations of linear wave equations

Constantin Carle and Marlis Hochbruck
Math. Comp. 93 (), 2611-2641.
Abstract, references and article information




methods

High-order splitting finite element methods for the subdiffusion equation with limited smoothing property

Buyang Li, Zongze Yang and Zhi Zhou
Math. Comp. 93 (), 2557-2586.
Abstract, references and article information




methods

C-tag TNF: a reporter system to study TNF shedding [Methods and Resources]

TNF is a highly pro-inflammatory cytokine that contributes not only to the regulation of immune responses but also to the development of severe inflammatory diseases. TNF is synthesized as a transmembrane protein, which is further matured via proteolytic cleavage by metalloproteases such as ADAM17, a process known as shedding. At present, TNF is mainly detected by measuring the precursor or the mature cytokine of bulk cell populations by techniques such as ELISA or immunoblotting. However, these methods do not provide information on the exact timing and extent of TNF cleavage at single-cell resolution and they do not allow the live visualization of shedding events. Here, we generated C-tag TNF as a genetically encoded reporter to study TNF shedding at the single-cell level. The functionality of the C-tag TNF reporter is based on the exposure of a cryptic epitope on the C terminus of the transmembrane portion of pro-TNF on cleavage. In both denatured and nondenatured samples, this epitope can be detected by a nanobody in a highly sensitive and specific manner only upon TNF shedding. As such, C-tag TNF can successfully be used for the detection of TNF cleavage in flow cytometry and live-cell imaging applications. We furthermore demonstrate its applicability in a forward genetic screen geared toward the identification of genetic regulators of TNF maturation. In summary, the C-tag TNF reporter can be employed to gain novel insights into the complex regulation of ADAM-dependent TNF shedding.




methods

A highly potent CD73 biparatopic antibody blocks organization of the enzyme active site through dual mechanisms [Methods and Resources]

The dimeric ectonucleotidase CD73 catalyzes the hydrolysis of AMP at the cell surface to form adenosine, a potent suppressor of the immune response. Blocking CD73 activity in the tumor microenvironment can have a beneficial effect on tumor eradication and is a promising approach for cancer therapy. Biparatopic antibodies binding different regions of CD73 may be a means to antagonize its enzymatic activity. A panel of biparatopic antibodies representing the pairwise combination of 11 parental monoclonal antibodies against CD73 was generated by Fab-arm exchange. Nine variants vastly exceeded the potency of their parental antibodies with ≥90% inhibition of activity and subnanomolar EC50 values. Pairing the Fabs of parents with nonoverlapping epitopes was both sufficient and necessary whereas monovalent antibodies were poor inhibitors. Some parental antibodies yielded potent biparatopics with multiple partners, one of which (TB19) producing the most potent. The structure of the TB19 Fab with CD73 reveals that it blocks alignment of the N- and C-terminal CD73 domains necessary for catalysis. A separate structure of CD73 with a Fab (TB38) which complements TB19 in a particularly potent biparatopic shows its binding to a nonoverlapping site on the CD73 N-terminal domain. Structural modeling demonstrates a TB19/TB38 biparatopic antibody would be unable to bind the CD73 dimer in a bivalent manner, implicating crosslinking of separate CD73 dimers in its mechanism of action. This ability of a biparatopic antibody to both crosslink CD73 dimers and fix them in an inactive conformation thus represents a highly effective mechanism for the inhibition of CD73 activity.




methods

International Metabolic Prognostic Index Is Superior to Other Metabolic Tumor Volume-Based Prognostication Methods in a Real-Life Cohort of Diffuse Large B-Cell Lymphoma

Visual Abstract




methods

AggreCount: an unbiased image analysis tool for identifying and quantifying cellular aggregates in a spatially defined manner [Methods and Resources]

Protein quality control is maintained by a number of integrated cellular pathways that monitor the folding and functionality of the cellular proteome. Defects in these pathways lead to the accumulation of misfolded or faulty proteins that may become insoluble and aggregate over time. Protein aggregates significantly contribute to the development of a number of human diseases such as amyotrophic lateral sclerosis, Huntington's disease, and Alzheimer's disease. In vitro, imaging-based, cellular studies have defined key biomolecular components that recognize and clear aggregates; however, no unifying method is available to quantify cellular aggregates, limiting our ability to reproducibly and accurately quantify these structures. Here we describe an ImageJ macro called AggreCount to identify and measure protein aggregates in cells. AggreCount is designed to be intuitive, easy to use, and customizable for different types of aggregates observed in cells. Minimal experience in coding is required to utilize the script. Based on a user-defined image, AggreCount will report a number of metrics: (i) total number of cellular aggregates, (ii) percentage of cells with aggregates, (iii) aggregates per cell, (iv) area of aggregates, and (v) localization of aggregates (cytosol, perinuclear, or nuclear). A data table of aggregate information on a per cell basis, as well as a summary table, is provided for further data analysis. We demonstrate the versatility of AggreCount by analyzing a number of different cellular aggregates including aggresomes, stress granules, and inclusion bodies caused by huntingtin polyglutamine expansion.




methods

Visualizing, quantifying, and manipulating mitochondrial DNA in vivo [Methods and Resources]

Mitochondrial DNA (mtDNA) encodes proteins and RNAs that support the functions of mitochondria and thereby numerous physiological processes. Mutations of mtDNA can cause mitochondrial diseases and are implicated in aging. The mtDNA within cells is organized into nucleoids within the mitochondrial matrix, but how mtDNA nucleoids are formed and regulated within cells remains incompletely resolved. Visualization of mtDNA within cells is a powerful means by which mechanistic insight can be gained. Manipulation of the amount and sequence of mtDNA within cells is important experimentally and for developing therapeutic interventions to treat mitochondrial disease. This review details recent developments and opportunities for improvements in the experimental tools and techniques that can be used to visualize, quantify, and manipulate the properties of mtDNA within cells.