dis Milk and dairy foods : their functionality in human health and disease By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9780128156049 (electronic bk.) Full Article
dis Manual of valvular heart disease By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9781496310125 paperback Full Article
dis Integrated pest and disease management in greenhouse crops By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783030223045 electronic book Full Article
dis Handbook of the cerebellum and cerebellar disorders By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783319979113 (electronic bk.) Full Article
dis Handbook of optimization in electric power distribution systems By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783030361150 Full Article
dis Frailty and cardiovascular diseases : research into an elderly population By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783030333300 (electronic bk.) Full Article
dis Dynamics of immune activation in viral diseases By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9789811510458 (electronic bk.) Full Article
dis DNA repair disorders By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9789811067228 (electronic bk.) Full Article
dis Clinical Cases in Disorders of Melanocytes By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783030227579 Full Article
dis Atlas of sexually transmitted diseases : clinical aspects and differential diagnosis By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9783319574707 (electronic bk.) Full Article
dis Anxiety disorders : rethinking and understanding recent discoveries By dal.novanet.ca Published On :: Fri, 1 May 2020 19:44:43 -0300 Callnumber: OnlineISBN: 9789813297050 (electronic bk.) Full Article
dis Utah Signs SB 29 Drug Disposal Program Into Law, A Huge Step Forward... By www.prweb.com Published On :: Utah State Bill SB 29 requires environmentally friendly disposal of a lawfully possessed controlled substance. NarcX worked closely with Utah lawmakers to provide crucial guidance for the bill.(PRWeb April 08, 2020)Read the full story at https://www.prweb.com/releases/utah_signs_sb_29_drug_disposal_program_into_law_a_huge_step_forward_for_narcx/prweb17030392.htm Full Article
dis Distributed estimation of principal eigenspaces By projecteuclid.org Published On :: Wed, 30 Oct 2019 22:03 EDT Jianqing Fan, Dong Wang, Kaizheng Wang, Ziwei Zhu. Source: The Annals of Statistics, Volume 47, Number 6, 3009--3031.Abstract: Principal component analysis (PCA) is fundamental to statistical machine learning. It extracts latent principal factors that contribute to the most variation of the data. When data are stored across multiple machines, however, communication cost can prohibit the computation of PCA in a central location and distributed algorithms for PCA are thus needed. This paper proposes and studies a distributed PCA algorithm: each node machine computes the top $K$ eigenvectors and transmits them to the central server; the central server then aggregates the information from all the node machines and conducts a PCA based on the aggregated information. We investigate the bias and variance for the resulting distributed estimator of the top $K$ eigenvectors. In particular, we show that for distributions with symmetric innovation, the empirical top eigenspaces are unbiased, and hence the distributed PCA is “unbiased.” We derive the rate of convergence for distributed PCA estimators, which depends explicitly on the effective rank of covariance, eigengap, and the number of machines. We show that when the number of machines is not unreasonably large, the distributed PCA performs as well as the whole sample PCA, even without full access of whole data. The theoretical results are verified by an extensive simulation study. We also extend our analysis to the heterogeneous case where the population covariance matrices are different across local machines but share similar top eigenstructures. Full Article
dis Eigenvalue distributions of variance components estimators in high-dimensional random effects models By projecteuclid.org Published On :: Fri, 02 Aug 2019 22:04 EDT Zhou Fan, Iain M. Johnstone. Source: The Annals of Statistics, Volume 47, Number 5, 2855--2886.Abstract: We study the spectra of MANOVA estimators for variance component covariance matrices in multivariate random effects models. When the dimensionality of the observations is large and comparable to the number of realizations of each random effect, we show that the empirical spectra of such estimators are well approximated by deterministic laws. The Stieltjes transforms of these laws are characterized by systems of fixed-point equations, which are numerically solvable by a simple iterative procedure. Our proof uses operator-valued free probability theory, and we establish a general asymptotic freeness result for families of rectangular orthogonally invariant random matrices, which is of independent interest. Our work is motivated in part by the estimation of components of covariance between multiple phenotypic traits in quantitative genetics, and we specialize our results to common experimental designs that arise in this application. Full Article
dis Distance multivariance: New dependence measures for random vectors By projecteuclid.org Published On :: Fri, 02 Aug 2019 22:04 EDT Björn Böttcher, Martin Keller-Ressel, René L. Schilling. Source: The Annals of Statistics, Volume 47, Number 5, 2757--2789.Abstract: We introduce two new measures for the dependence of $nge2$ random variables: distance multivariance and total distance multivariance . Both measures are based on the weighted $L^{2}$-distance of quantities related to the characteristic functions of the underlying random variables. These extend distance covariance (introduced by Székely, Rizzo and Bakirov) from pairs of random variables to $n$-tuplets of random variables. We show that total distance multivariance can be used to detect the independence of $n$ random variables and has a simple finite-sample representation in terms of distance matrices of the sample points, where distance is measured by a continuous negative definite function. Under some mild moment conditions, this leads to a test for independence of multiple random vectors which is consistent against all alternatives. Full Article
dis Regression for copula-linked compound distributions with applications in modeling aggregate insurance claims By projecteuclid.org Published On :: Wed, 15 Apr 2020 22:05 EDT Peng Shi, Zifeng Zhao. Source: The Annals of Applied Statistics, Volume 14, Number 1, 357--380.Abstract: In actuarial research a task of particular interest and importance is to predict the loss cost for individual risks so that informative decisions are made in various insurance operations such as underwriting, ratemaking and capital management. The loss cost is typically viewed to follow a compound distribution where the summation of the severity variables is stopped by the frequency variable. A challenging issue in modeling such outcomes is to accommodate the potential dependence between the number of claims and the size of each individual claim. In this article we introduce a novel regression framework for compound distributions that uses a copula to accommodate the association between the frequency and the severity variables and, thus, allows for arbitrary dependence between the two components. We further show that the new model is very flexible and is easily modified to account for incomplete data due to censoring or truncation. The flexibility of the proposed model is illustrated using both simulated and real data sets. In the analysis of granular claims data from property insurance, we find substantive negative relationship between the number and the size of insurance claims. In addition, we demonstrate that ignoring the frequency-severity association could lead to biased decision-making in insurance operations. Full Article
dis Modifying the Chi-square and the CMH test for population genetic inference: Adapting to overdispersion By projecteuclid.org Published On :: Wed, 15 Apr 2020 22:05 EDT Kerstin Spitzer, Marta Pelizzola, Andreas Futschik. Source: The Annals of Applied Statistics, Volume 14, Number 1, 202--220.Abstract: Evolve and resequence studies provide a popular approach to simulate evolution in the lab and explore its genetic basis. In this context, Pearson’s chi-square test, Fisher’s exact test as well as the Cochran–Mantel–Haenszel test are commonly used to infer genomic positions affected by selection from temporal changes in allele frequency. However, the null model associated with these tests does not match the null hypothesis of actual interest. Indeed, due to genetic drift and possibly other additional noise components such as pool sequencing, the null variance in the data can be substantially larger than accounted for by these common test statistics. This leads to $p$-values that are systematically too small and, therefore, a huge number of false positive results. Even, if the ranking rather than the actual $p$-values is of interest, a naive application of the mentioned tests will give misleading results, as the amount of overdispersion varies from locus to locus. We therefore propose adjusted statistics that take the overdispersion into account while keeping the formulas simple. This is particularly useful in genome-wide applications, where millions of SNPs can be handled with little computational effort. We then apply the adapted test statistics to real data from Drosophila and investigate how information from intermediate generations can be included when available. We also discuss further applications such as genome-wide association studies based on pool sequencing data and tests for local adaptation. Full Article
dis A latent discrete Markov random field approach to identifying and classifying historical forest communities based on spatial multivariate tree species counts By projecteuclid.org Published On :: Wed, 27 Nov 2019 22:01 EST Stephen Berg, Jun Zhu, Murray K. Clayton, Monika E. Shea, David J. Mladenoff. Source: The Annals of Applied Statistics, Volume 13, Number 4, 2312--2340.Abstract: The Wisconsin Public Land Survey database describes historical forest composition at high spatial resolution and is of interest in ecological studies of forest composition in Wisconsin just prior to significant Euro-American settlement. For such studies it is useful to identify recurring subpopulations of tree species known as communities, but standard clustering approaches for subpopulation identification do not account for dependence between spatially nearby observations. Here, we develop and fit a latent discrete Markov random field model for the purpose of identifying and classifying historical forest communities based on spatially referenced multivariate tree species counts across Wisconsin. We show empirically for the actual dataset and through simulation that our latent Markov random field modeling approach improves prediction and parameter estimation performance. For model fitting we introduce a new stochastic approximation algorithm which enables computationally efficient estimation and classification of large amounts of spatial multivariate count data. Full Article
dis Bayesian modeling of the structural connectome for studying Alzheimer’s disease By projecteuclid.org Published On :: Wed, 16 Oct 2019 22:03 EDT Arkaprava Roy, Subhashis Ghosal, Jeffrey Prescott, Kingshuk Roy Choudhury. Source: The Annals of Applied Statistics, Volume 13, Number 3, 1791--1816.Abstract: We study possible relations between Alzheimer’s disease progression and the structure of the connectome which is white matter connecting different regions of the brain. Regression models in covariates including age, gender and disease status for the extent of white matter connecting each pair of regions of the brain are proposed. Subject inhomogeneity is also incorporated in the model through random effects with an unknown distribution. As there is a large number of pairs of regions, we also adopt a dimension reduction technique through graphon ( J. Combin. Theory Ser. B 96 (2006) 933–957) functions which reduces the functions of pairs of regions to functions of regions. The connecting graphon functions are considered unknown but the assumed smoothness allows putting priors of low complexity on these functions. We pursue a nonparametric Bayesian approach by assigning a Dirichlet process scale mixture of zero to mean normal prior on the distributions of the random effects and finite random series of tensor products of B-splines priors on the underlying graphon functions. We develop efficient Markov chain Monte Carlo techniques for drawing samples for the posterior distributions using Hamiltonian Monte Carlo (HMC). The proposed Bayesian method overwhelmingly outperforms a competing method based on ANCOVA models in the simulation setup. The proposed Bayesian approach is applied on a dataset of 100 subjects and 83 brain regions and key regions implicated in the changing connectome are identified. Full Article
dis Distributional regression forests for probabilistic precipitation forecasting in complex terrain By projecteuclid.org Published On :: Wed, 16 Oct 2019 22:03 EDT Lisa Schlosser, Torsten Hothorn, Reto Stauffer, Achim Zeileis. Source: The Annals of Applied Statistics, Volume 13, Number 3, 1564--1589.Abstract: To obtain a probabilistic model for a dependent variable based on some set of explanatory variables, a distributional approach is often adopted where the parameters of the distribution are linked to regressors. In many classical models this only captures the location of the distribution but over the last decade there has been increasing interest in distributional regression approaches modeling all parameters including location, scale and shape. Notably, so-called nonhomogeneous Gaussian regression (NGR) models both mean and variance of a Gaussian response and is particularly popular in weather forecasting. Moreover, generalized additive models for location, scale and shape (GAMLSS) provide a framework where each distribution parameter is modeled separately capturing smooth linear or nonlinear effects. However, when variable selection is required and/or there are nonsmooth dependencies or interactions (especially unknown or of high-order), it is challenging to establish a good GAMLSS. A natural alternative in these situations would be the application of regression trees or random forests but, so far, no general distributional framework is available for these. Therefore, a framework for distributional regression trees and forests is proposed that blends regression trees and random forests with classical distributions from the GAMLSS framework as well as their censored or truncated counterparts. To illustrate these novel approaches in practice, they are employed to obtain probabilistic precipitation forecasts at numerous sites in a mountainous region (Tyrol, Austria) based on a large number of numerical weather prediction quantities. It is shown that the novel distributional regression forests automatically select variables and interactions, performing on par or often even better than GAMLSS specified either through prior meteorological knowledge or a computationally more demanding boosting approach. Full Article
dis Fast dynamic nonparametric distribution tracking in electron microscopic data By projecteuclid.org Published On :: Wed, 16 Oct 2019 22:03 EDT Yanjun Qian, Jianhua Z. Huang, Chiwoo Park, Yu Ding. Source: The Annals of Applied Statistics, Volume 13, Number 3, 1537--1563.Abstract: In situ transmission electron microscope (TEM) adds a promising instrument to the exploration of the nanoscale world, allowing motion pictures to be taken while nano objects are initiating, crystalizing and morphing into different sizes and shapes. To enable in-process control of nanocrystal production, this technology innovation hinges upon a solution addressing a statistical problem, which is the capability of online tracking a dynamic, time-varying probability distribution reflecting the nanocrystal growth. Because no known parametric density functions can adequately describe the evolving distribution, a nonparametric approach is inevitable. Towards this objective, we propose to incorporate the dynamic evolution of the normalized particle size distribution into a state space model, in which the density function is represented by a linear combination of B-splines and the spline coefficients are treated as states. The closed-form algorithm runs online updates faster than the frame rate of the in situ TEM video, making it suitable for in-process control purpose. Imposing the constraints of curve smoothness and temporal continuity improves the accuracy and robustness while tracking the probability distribution. We test our method on three published TEM videos. For all of them, the proposed method is able to outperform several alternative approaches. Full Article
dis On the probability distribution of the local times of diagonally operator-self-similar Gaussian fields with stationary increments By projecteuclid.org Published On :: Fri, 31 Jan 2020 04:06 EST Kamran Kalbasi, Thomas Mountford. Source: Bernoulli, Volume 26, Number 2, 1504--1534.Abstract: In this paper, we study the local times of vector-valued Gaussian fields that are ‘diagonally operator-self-similar’ and whose increments are stationary. Denoting the local time of such a Gaussian field around the spatial origin and over the temporal unit hypercube by $Z$, we show that there exists $lambdain(0,1)$ such that under some quite weak conditions, $lim_{n ightarrow+infty}frac{sqrt[n]{mathbb{E}(Z^{n})}}{n^{lambda}}$ and $lim_{x ightarrow+infty}frac{-logmathbb{P}(Z>x)}{x^{frac{1}{lambda}}}$ both exist and are strictly positive (possibly $+infty$). Moreover, we show that if the underlying Gaussian field is ‘strongly locally nondeterministic’, the above limits will be finite as well. These results are then applied to establish similar statements for the intersection local times of diagonally operator-self-similar Gaussian fields with stationary increments. Full Article
dis Dynamic linear discriminant analysis in high dimensional space By projecteuclid.org Published On :: Fri, 31 Jan 2020 04:06 EST Binyan Jiang, Ziqi Chen, Chenlei Leng. Source: Bernoulli, Volume 26, Number 2, 1234--1268.Abstract: High-dimensional data that evolve dynamically feature predominantly in the modern data era. As a partial response to this, recent years have seen increasing emphasis to address the dimensionality challenge. However, the non-static nature of these datasets is largely ignored. This paper addresses both challenges by proposing a novel yet simple dynamic linear programming discriminant (DLPD) rule for binary classification. Different from the usual static linear discriminant analysis, the new method is able to capture the changing distributions of the underlying populations by modeling their means and covariances as smooth functions of covariates of interest. Under an approximate sparse condition, we show that the conditional misclassification rate of the DLPD rule converges to the Bayes risk in probability uniformly over the range of the variables used for modeling the dynamics, when the dimensionality is allowed to grow exponentially with the sample size. The minimax lower bound of the estimation of the Bayes risk is also established, implying that the misclassification rate of our proposed rule is minimax-rate optimal. The promising performance of the DLPD rule is illustrated via extensive simulation studies and the analysis of a breast cancer dataset. Full Article
dis Characterization of probability distribution convergence in Wasserstein distance by $L^{p}$-quantization error function By projecteuclid.org Published On :: Fri, 31 Jan 2020 04:06 EST Yating Liu, Gilles Pagès. Source: Bernoulli, Volume 26, Number 2, 1171--1204.Abstract: We establish conditions to characterize probability measures by their $L^{p}$-quantization error functions in both $mathbb{R}^{d}$ and Hilbert settings. This characterization is two-fold: static (identity of two distributions) and dynamic (convergence for the $L^{p}$-Wasserstein distance). We first propose a criterion on the quantization level $N$, valid for any norm on $mathbb{R}^{d}$ and any order $p$ based on a geometrical approach involving the Voronoï diagram. Then, we prove that in the $L^{2}$-case on a (separable) Hilbert space, the condition on the level $N$ can be reduced to $N=2$, which is optimal. More quantization based characterization cases in dimension 1 and a discussion of the completeness of a distance defined by the quantization error function can be found at the end of this paper. Full Article
dis Distances and large deviations in the spatial preferential attachment model By projecteuclid.org Published On :: Fri, 31 Jan 2020 04:06 EST Christian Hirsch, Christian Mönch. Source: Bernoulli, Volume 26, Number 2, 927--947.Abstract: This paper considers two asymptotic properties of a spatial preferential-attachment model introduced by E. Jacob and P. Mörters (In Algorithms and Models for the Web Graph (2013) 14–25 Springer). First, in a regime of strong linear reinforcement, we show that typical distances are at most of doubly-logarithmic order. Second, we derive a large deviation principle for the empirical neighbourhood structure and express the rate function as solution to an entropy minimisation problem in the space of stationary marked point processes. Full Article
dis Convergence and concentration of empirical measures under Wasserstein distance in unbounded functional spaces By projecteuclid.org Published On :: Tue, 26 Nov 2019 04:00 EST Jing Lei. Source: Bernoulli, Volume 26, Number 1, 767--798.Abstract: We provide upper bounds of the expected Wasserstein distance between a probability measure and its empirical version, generalizing recent results for finite dimensional Euclidean spaces and bounded functional spaces. Such a generalization can cover Euclidean spaces with large dimensionality, with the optimal dependence on the dimensionality. Our method also covers the important case of Gaussian processes in separable Hilbert spaces, with rate-optimal upper bounds for functional data distributions whose coordinates decay geometrically or polynomially. Moreover, our bounds of the expected value can be combined with mean-concentration results to yield improved exponential tail probability bounds for the Wasserstein error of empirical measures under Bernstein-type or log Sobolev-type conditions. Full Article
dis Discover Protestant nonconformity in England and Wales / Paul Blake. By www.catalog.slsa.sa.gov.au Published On :: Dissenters, Religious -- Great Britain. Full Article
dis Austin-Area District Looks for Digital/Blended Learning Program; Baltimore Seeks High School Literacy Program By marketbrief.edweek.org Published On :: Tue, 05 May 2020 22:14:33 +0000 The Round Rock Independent School District in Texas is looking for a digital curriculum and blended learning program. Baltimore is looking for a comprehensive high school literacy program. The post Austin-Area District Looks for Digital/Blended Learning Program; Baltimore Seeks High School Literacy Program appeared first on Market Brief. Full Article Purchasing Alert Curriculum / Digital Curriculum Educational Technology/Ed-Tech Learning Management / Student Information Systems Procurement / Purchasing / RFPs
dis As States’ Budgets Reel During COVID-19, Districts to Feel the Wrath By marketbrief.edweek.org Published On :: Wed, 06 May 2020 21:23:43 +0000 State funding for K-12 is likely to fall sharply, though districts could look to protect essentials like distance-learning support and professional development, says school finance expert Mike Griffith. The post As States’ Budgets Reel During COVID-19, Districts to Feel the Wrath appeared first on Market Brief. Full Article Analyst's View COVID-19 Federal / State Policy Funding / Budgets Procurement / Purchasing / RFPs State Policy
dis What Districts Want From Assessments, as They Grapple With the Coronavirus By marketbrief.edweek.org Published On :: Fri, 08 May 2020 02:23:58 +0000 EdWeek Market Brief asked district officials in a nationwide survey about their most urgent assessment needs, as they cope with COVID-19 and tentatively plan for reopening schools. The post What Districts Want From Assessments, as They Grapple With the Coronavirus appeared first on Market Brief. Full Article Market Trends Assessment / Testing Coronavirus COVID-19 Exclusive Data
dis Calif. Ed-Tech Consortium Seeks Media Repository Solutions; Saint Paul District Needs Background Check Services By marketbrief.edweek.org Published On :: Fri, 08 May 2020 13:52:21 +0000 Saint Paul schools are in the market for a vendor to provide background checks, while the Education Technology Joint Powers Authority is seeking media repositories. A Texas district wants quotes on technology for new campuses. The post Calif. Ed-Tech Consortium Seeks Media Repository Solutions; Saint Paul District Needs Background Check Services appeared first on Market Brief. Full Article Purchasing Alert Background Checks Media Repository Procurement / Purchasing / RFPs Software / Hardware
dis Where do I start? Discover Your State Library Online By feedproxy.google.com Published On :: Wed, 06 May 2020 01:31:35 +0000 Whether you're looking for a new book to read, a binge-worthy podcast, inspiring stories, or a fun activity to do at home – you can get all of this and more online at your State Library Full Article
dis Where do I start? Discover Your State Library Online By feedproxy.google.com Published On :: Wed, 06 May 2020 07:16:13 +0000 Whether you’re looking for a new book to read, a binge-worthy podcast, inspiring stories, or a fun activity to do at home — you can get all of this and more online at your State Library. Full Article
dis India uses drones to disinfect virus hotspot as cases surge By news.yahoo.com Published On :: Sat, 09 May 2020 11:19:33 -0400 Indian authorities used drones and fire engines to disinfect the pandemic-hit city of Ahmedabad on Saturday, as virus cases surged and police clashed with migrant workers protesting against a reinforced lockdown. The western city of 5.5 million people in Prime Minister Narendra Modi's home state has become a major concern for authorities as they battle an uptick in coronavirus deaths and cases across India. Full Article
dis U.S. chief justice puts hold on disclosure of Russia investigation materials By news.yahoo.com Published On :: Fri, 08 May 2020 11:50:21 -0400 U.S. Chief Justice John Roberts on Friday put a temporary hold on the disclosure to a Democratic-led House of Representatives committee of grand jury material redacted from former Special Counsel Robert Mueller's report on Russian interference in the 2016 election. The U.S. Court of Appeals for the District of Columbia Circuit ruled in March that the materials had to be disclosed to the House Judiciary Committee and refused to put that decision on hold. The appeals court said the materials had to be handed over by May 11 if the Supreme Court did not intervene. Full Article
dis 'We Cannot Police Our Way Out of a Pandemic.' Experts, Police Union Say NYPD Should Not Be Enforcing Social Distance Rules Amid COVID-19 By news.yahoo.com Published On :: Thu, 07 May 2020 17:03:38 -0400 The New York City police department (NYPD) is conducting an internal investigation into a May 2 incident involving the violent arrests of multiple people, allegedly members of a group who were not social distancing Full Article
dis The accusation against Joe Biden has Democrats rediscovering the value of due process By news.yahoo.com Published On :: Sat, 09 May 2020 08:37:00 -0400 Some Democrats took "Believe Women" literally until Joe Biden was accused. Now they're relearning that guilt-by-accusation doesn't serve justice. Full Article
dis Bayesian Quantile Regression with Mixed Discrete and Nonignorable Missing Covariates By projecteuclid.org Published On :: Thu, 19 Mar 2020 22:02 EDT Zhi-Qiang Wang, Nian-Sheng Tang. Source: Bayesian Analysis, Volume 15, Number 2, 579--604.Abstract: Bayesian inference on quantile regression (QR) model with mixed discrete and non-ignorable missing covariates is conducted by reformulating QR model as a hierarchical structure model. A probit regression model is adopted to specify missing covariate mechanism. A hybrid algorithm combining the Gibbs sampler and the Metropolis-Hastings algorithm is developed to simultaneously produce Bayesian estimates of unknown parameters and latent variables as well as their corresponding standard errors. Bayesian variable selection method is proposed to recognize significant covariates. A Bayesian local influence procedure is presented to assess the effect of minor perturbations to the data, priors and sampling distributions on posterior quantities of interest. Several simulation studies and an example are presented to illustrate the proposed methodologies. Full Article
dis Additive Multivariate Gaussian Processes for Joint Species Distribution Modeling with Heterogeneous Data By projecteuclid.org Published On :: Thu, 19 Mar 2020 22:02 EDT Jarno Vanhatalo, Marcelo Hartmann, Lari Veneranta. Source: Bayesian Analysis, Volume 15, Number 2, 415--447.Abstract: Species distribution models (SDM) are a key tool in ecology, conservation and management of natural resources. Two key components of the state-of-the-art SDMs are the description for species distribution response along environmental covariates and the spatial random effect that captures deviations from the distribution patterns explained by environmental covariates. Joint species distribution models (JSDMs) additionally include interspecific correlations which have been shown to improve their descriptive and predictive performance compared to single species models. However, current JSDMs are restricted to hierarchical generalized linear modeling framework. Their limitation is that parametric models have trouble in explaining changes in abundance due, for example, highly non-linear physical tolerance limits which is particularly important when predicting species distribution in new areas or under scenarios of environmental change. On the other hand, semi-parametric response functions have been shown to improve the predictive performance of SDMs in these tasks in single species models. Here, we propose JSDMs where the responses to environmental covariates are modeled with additive multivariate Gaussian processes coded as linear models of coregionalization. These allow inference for wide range of functional forms and interspecific correlations between the responses. We propose also an efficient approach for inference with Laplace approximation and parameterization of the interspecific covariance matrices on the Euclidean space. We demonstrate the benefits of our model with two small scale examples and one real world case study. We use cross-validation to compare the proposed model to analogous semi-parametric single species models and parametric single and joint species models in interpolation and extrapolation tasks. The proposed model outperforms the alternative models in all cases. We also show that the proposed model can be seen as an extension of the current state-of-the-art JSDMs to semi-parametric models. Full Article
dis A Novel Algorithmic Approach to Bayesian Logic Regression (with Discussion) By projecteuclid.org Published On :: Tue, 17 Mar 2020 04:00 EDT Aliaksandr Hubin, Geir Storvik, Florian Frommlet. Source: Bayesian Analysis, Volume 15, Number 1, 263--333.Abstract: Logic regression was developed more than a decade ago as a tool to construct predictors from Boolean combinations of binary covariates. It has been mainly used to model epistatic effects in genetic association studies, which is very appealing due to the intuitive interpretation of logic expressions to describe the interaction between genetic variations. Nevertheless logic regression has (partly due to computational challenges) remained less well known than other approaches to epistatic association mapping. Here we will adapt an advanced evolutionary algorithm called GMJMCMC (Genetically modified Mode Jumping Markov Chain Monte Carlo) to perform Bayesian model selection in the space of logic regression models. After describing the algorithmic details of GMJMCMC we perform a comprehensive simulation study that illustrates its performance given logic regression terms of various complexity. Specifically GMJMCMC is shown to be able to identify three-way and even four-way interactions with relatively large power, a level of complexity which has not been achieved by previous implementations of logic regression. We apply GMJMCMC to reanalyze QTL (quantitative trait locus) mapping data for Recombinant Inbred Lines in Arabidopsis thaliana and from a backcross population in Drosophila where we identify several interesting epistatic effects. The method is implemented in an R package which is available on github. Full Article
dis Latent Nested Nonparametric Priors (with Discussion) By projecteuclid.org Published On :: Thu, 19 Dec 2019 22:10 EST Federico Camerlenghi, David B. Dunson, Antonio Lijoi, Igor Prünster, Abel Rodríguez. Source: Bayesian Analysis, Volume 14, Number 4, 1303--1356.Abstract: Discrete random structures are important tools in Bayesian nonparametrics and the resulting models have proven effective in density estimation, clustering, topic modeling and prediction, among others. In this paper, we consider nested processes and study the dependence structures they induce. Dependence ranges between homogeneity, corresponding to full exchangeability, and maximum heterogeneity, corresponding to (unconditional) independence across samples. The popular nested Dirichlet process is shown to degenerate to the fully exchangeable case when there are ties across samples at the observed or latent level. To overcome this drawback, inherent to nesting general discrete random measures, we introduce a novel class of latent nested processes. These are obtained by adding common and group-specific completely random measures and, then, normalizing to yield dependent random probability measures. We provide results on the partition distributions induced by latent nested processes, and develop a Markov Chain Monte Carlo sampler for Bayesian inferences. A test for distributional homogeneity across groups is obtained as a by-product. The results and their inferential implications are showcased on synthetic and real data. Full Article
dis Spatial Disease Mapping Using Directed Acyclic Graph Auto-Regressive (DAGAR) Models By projecteuclid.org Published On :: Thu, 19 Dec 2019 22:10 EST Abhirup Datta, Sudipto Banerjee, James S. Hodges, Leiwen Gao. Source: Bayesian Analysis, Volume 14, Number 4, 1221--1244.Abstract: Hierarchical models for regionally aggregated disease incidence data commonly involve region specific latent random effects that are modeled jointly as having a multivariate Gaussian distribution. The covariance or precision matrix incorporates the spatial dependence between the regions. Common choices for the precision matrix include the widely used ICAR model, which is singular, and its nonsingular extension which lacks interpretability. We propose a new parametric model for the precision matrix based on a directed acyclic graph (DAG) representation of the spatial dependence. Our model guarantees positive definiteness and, hence, in addition to being a valid prior for regional spatially correlated random effects, can also directly model the outcome from dependent data like images and networks. Theoretical results establish a link between the parameters in our model and the variance and covariances of the random effects. Simulation studies demonstrate that the improved interpretability of our model reaps benefits in terms of accurately recovering the latent spatial random effects as well as for inference on the spatial covariance parameters. Under modest spatial correlation, our model far outperforms the CAR models, while the performances are similar when the spatial correlation is strong. We also assess sensitivity to the choice of the ordering in the DAG construction using theoretical and empirical results which testify to the robustness of our model. We also present a large-scale public health application demonstrating the competitive performance of the model. Full Article
dis A Bayesian Conjugate Gradient Method (with Discussion) By projecteuclid.org Published On :: Mon, 02 Dec 2019 04:00 EST Jon Cockayne, Chris J. Oates, Ilse C.F. Ipsen, Mark Girolami. Source: Bayesian Analysis, Volume 14, Number 3, 937--1012.Abstract: A fundamental task in numerical computation is the solution of large linear systems. The conjugate gradient method is an iterative method which offers rapid convergence to the solution, particularly when an effective preconditioner is employed. However, for more challenging systems a substantial error can be present even after many iterations have been performed. The estimates obtained in this case are of little value unless further information can be provided about, for example, the magnitude of the error. In this paper we propose a novel statistical model for this error, set in a Bayesian framework. Our approach is a strict generalisation of the conjugate gradient method, which is recovered as the posterior mean for a particular choice of prior. The estimates obtained are analysed with Krylov subspace methods and a contraction result for the posterior is presented. The method is then analysed in a simulation study as well as being applied to a challenging problem in medical imaging. Full Article
dis Alleviating Spatial Confounding for Areal Data Problems by Displacing the Geographical Centroids By projecteuclid.org Published On :: Fri, 31 May 2019 22:05 EDT Marcos Oliveira Prates, Renato Martins Assunção, Erica Castilho Rodrigues. Source: Bayesian Analysis, Volume 14, Number 2, 623--647.Abstract: Spatial confounding between the spatial random effects and fixed effects covariates has been recently discovered and showed that it may bring misleading interpretation to the model results. Techniques to alleviate this problem are based on decomposing the spatial random effect and fitting a restricted spatial regression. In this paper, we propose a different approach: a transformation of the geographic space to ensure that the unobserved spatial random effect added to the regression is orthogonal to the fixed effects covariates. Our approach, named SPOCK, has the additional benefit of providing a fast and simple computational method to estimate the parameters. Also, it does not constrain the distribution class assumed for the spatial error term. A simulation study and real data analyses are presented to better understand the advantages of the new method in comparison with the existing ones. Full Article
dis A Bayesian Approach to Statistical Shape Analysis via the Projected Normal Distribution By projecteuclid.org Published On :: Wed, 13 Mar 2019 22:00 EDT Luis Gutiérrez, Eduardo Gutiérrez-Peña, Ramsés H. Mena. Source: Bayesian Analysis, Volume 14, Number 2, 427--447.Abstract: This work presents a Bayesian predictive approach to statistical shape analysis. A modeling strategy that starts with a Gaussian distribution on the configuration space, and then removes the effects of location, rotation and scale, is studied. This boils down to an application of the projected normal distribution to model the configurations in the shape space, which together with certain identifiability constraints, facilitates parameter interpretation. Having better control over the parameters allows us to generalize the model to a regression setting where the effect of predictors on shapes can be considered. The methodology is illustrated and tested using both simulated scenarios and a real data set concerning eight anatomical landmarks on a sagittal plane of the corpus callosum in patients with autism and in a group of controls. Full Article
dis A Tale of Two Parasites: Statistical Modelling to Support Disease Control Programmes in Africa By projecteuclid.org Published On :: Tue, 03 Mar 2020 04:00 EST Peter J. Diggle, Emanuele Giorgi, Julienne Atsame, Sylvie Ntsame Ella, Kisito Ogoussan, Katherine Gass. Source: Statistical Science, Volume 35, Number 1, 42--50.Abstract: Vector-borne diseases have long presented major challenges to the health of rural communities in the wet tropical regions of the world, but especially in sub-Saharan Africa. In this paper, we describe the contribution that statistical modelling has made to the global elimination programme for one vector-borne disease, onchocerciasis. We explain why information on the spatial distribution of a second vector-borne disease, Loa loa, is needed before communities at high risk of onchocerciasis can be treated safely with mass distribution of ivermectin, an antifiarial medication. We show how a model-based geostatistical analysis of Loa loa prevalence survey data can be used to map the predictive probability that each location in the region of interest meets a WHO policy guideline for safe mass distribution of ivermectin and describe two applications: one is to data from Cameroon that assesses prevalence using traditional blood-smear microscopy; the other is to Africa-wide data that uses a low-cost questionnaire-based method. We describe how a recent technological development in image-based microscopy has resulted in a change of emphasis from prevalence alone to the bivariate spatial distribution of prevalence and the intensity of infection among infected individuals. We discuss how statistical modelling of the kind described here can contribute to health policy guidelines and decision-making in two ways. One is to ensure that, in a resource-limited setting, prevalence surveys are designed, and the resulting data analysed, as efficiently as possible. The other is to provide an honest quantification of the uncertainty attached to any binary decision by reporting predictive probabilities that a policy-defined condition for action is or is not met. Full Article
dis Discussion: Models as Approximations By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Dalia Ghanem, Todd A. Kuffner. Source: Statistical Science, Volume 34, Number 4, 604--605. Full Article
dis Discussion of Models as Approximations I & II By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Dag Tjøstheim. Source: Statistical Science, Volume 34, Number 4, 575--579. Full Article
dis Discussion of Models as Approximations I & II By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Sara van de Geer. Source: Statistical Science, Volume 34, Number 4, 566--568.Abstract: We discuss the papers “Models as Approximations” I & II, by A. Buja, R. Berk, L. Brown, E. George, E. Pitkin, M. Traskin, L. Zao and K. Zhang (Part I) and A. Buja, L. Brown, A. K. Kuchibhota, R. Berk, E. George and L. Zhao (Part II). We present a summary with some details for the generalized linear model. Full Article
dis User-Friendly Covariance Estimation for Heavy-Tailed Distributions By projecteuclid.org Published On :: Fri, 11 Oct 2019 04:03 EDT Yuan Ke, Stanislav Minsker, Zhao Ren, Qiang Sun, Wen-Xin Zhou. Source: Statistical Science, Volume 34, Number 3, 454--471.Abstract: We provide a survey of recent results on covariance estimation for heavy-tailed distributions. By unifying ideas scattered in the literature, we propose user-friendly methods that facilitate practical implementation. Specifically, we introduce elementwise and spectrumwise truncation operators, as well as their $M$-estimator counterparts, to robustify the sample covariance matrix. Different from the classical notion of robustness that is characterized by the breakdown property, we focus on the tail robustness which is evidenced by the connection between nonasymptotic deviation and confidence level. The key insight is that estimators should adapt to the sample size, dimensionality and noise level to achieve optimal tradeoff between bias and robustness. Furthermore, to facilitate practical implementation, we propose data-driven procedures that automatically calibrate the tuning parameters. We demonstrate their applications to a series of structured models in high dimensions, including the bandable and low-rank covariance matrices and sparse precision matrices. Numerical studies lend strong support to the proposed methods. Full Article