Online journal dedicated to nursing informatics

International universities are changing with their style of operation, mode of teaching and learning operations. This change is noticeable rapidly in India and also in international contexts due to healthy and innovative methods, educational strategies, and nomenclature throughout the world. Technologies are changing rapidly, including ICT. Different subjects are developed in the fields of IT and computing with the interaction or applications to other fields, viz. health informatics, bio informatics, agriculture informatics, and so on. Agricultural informatics is an interdisciplinary subject dedicated to combining information technology and information science utilisation in agricultural sciences. The digital agriculture is powered by agriculture informatics practice. For teaching, research and development of any subject educational methods is considered as important and various educational programs are there in this regard viz. Bachelor of Education, Master of Education, PhD in Education, etc. Degrees are also available to deal with the subjects and agricultural informatics should not be an exception of this. In this context, Doctor of Education (EdD or DEd) is an emerging degree having features of skill sets, courses and research work. This paper proposed on EdD program with agricultural informatics specialisation for improving healthy agriculture system. Here, a proposed model core curriculum is also presented.

In the context of asthma severity prediction, this study delves into the feature importance of various symptoms and demographic attributes. Leveraging a comprehensive dataset encompassing symptom occurrences across varying severity levels, this investigation employs visualisation techniques, such as stacked bar plots, to illustrate the distribution of symptomatology within different severity categories. Additionally, correlation coefficient analysis is applied to quantify the relationships between individual attributes and severity levels. Moreover, the study harnesses the power of random forest and the Gini importance methodology, essential tools in feature importance analytics, to discern the most influential predictors in asthma severity prediction. The experimental results bring to light compelling associations between certain symptoms, notably 'runny-nose' and 'nasal-congestion', and specific severity levels, elucidating their potential significance as pivotal predictive indicators. Conversely, demographic factors, encompassing age groups and gender, exhibit comparatively weaker correlations with symptomatology. These findings underscore the pivotal role of individual symptoms in characterising asthma severity, reinforcing the potential for feature importance analysis to enhance predictive models in the realm of asthma management and bioinformatics.

A new article "A decadal view of biodiversity informatics: challenges and priorities"  published by BMC Ecology focuses on the challenges and perspectives for biodiversity informatics after a decade of development. The authors Alex Hardisty and Dave Roberts alongside 77 contributions from the biodiversity informatics community share experience and set future directions of biodiversity informatics as a tool for addressing conservation and ecological issues.

Biodiversity informatics plays a central enabling role in the research community's efforts to address scientific conservation and sustainability issues. This community consultation paper positions the role of biodiversity informatics, for the next decade, presenting the actions needed to link the various biodiversity infrastructures invisibly and to facilitate understanding that can support both business and policy-makers. The community considers the goal in biodiversity informatics to be full integration of the biodiversity research community, including citizens’ science, through a commonly-shared, sustainable e-infrastructure across all sub-disciplines that reliably serves science and society alike.

The full text of the article can be accessed here.

The first Informatics Workshop of the EU-FP7 funded project EU BON was held on 29-31 May 2013 in Trondheim, Norway. The meeting was hosted by the EU BON partner Norwegian Biodiversity Information Centre (NBIC). The aims were to highlight the link to infrastructures and processes like GEOSS or DataONE and to discuss the data standards and informatics architecture that will be followed by the EU BON project.

During the three-days of the workshop, the participants of the meeting discussed the important aspects regarding the informatics architecture and decided on the next steps to develop a new open-access platform for sharing biodiversity data and tools in order to advance the European biodiversity knowledge.  On the first day, the aim was to highlight the link of EU BON with GEOSS, GEO BON and other processes like DataONE to find synergies and to build on work that was conducted in these processes. On the second day, detailed discussion on the specific tasks of the workgroup took place. The afternoon session was split into 3 different tracks where issues like architectural design, review and guidelines for using data standards, the design of monitoring sites and the gap analysis of existing biodiversity data were analyzed and discussed.

It was agreed that a new platform is needed which should be built on existing solutions. Thus, the platform will use the technical solutions of the DataONE network that will be adjusted to the specific needs of the EU BON project. EU BON Partners will implement DataONE Member Nodes to start the process and a DataOne coordinating node may be established towards 2015. Furthermore, it was also decided to join and support the GEO BON Working Group pilot project on automating the data flows for the Essential Biodiversity Variables.

At the Bioinformatics Horizon 2013 Conference (3 - 6 September 2013, Rome) a Memorandum of Understanding was signed between PESI and EU BON. Christoph Häuser, on behalf of EU BON and Yde de Jong on behalf of PESI (see picture below), signed the document to strengthen the cooperation and formalise the integrating efforts of the European species infrastructures.  

PESI is now a new associate partner of EU BON, a consortium with currently 30 partners from 18 countries. One of the common aims of EU BON and PESI will be to establish and sustain standard taxonomies for Europe.  EU BON will support the PESI backbone developments, including its components, with a focus on Fauna Europaea and Euro+Med. Besides analyzing current gaps, new ideas will be developed to trigger expert involvement and enhance the data management systems.

In a side-meeting at BIH 2013, some ideas were discussed with available EU BON and PESI partners. Important steps will be taken to secure the sustainability of databases and expertise networks combined with the development of technical innovations for users and stakeholders and to promote the implementation of PESI as a European (INSPIRE) standard. It will be also important to further integrate the huge expertise networks, outreach to PESI Focal Points and expand the geographical scope. Furthermore, it will be important to integrate additional data types and data-resources.

The 2nd EU BON training on data sharing tools will take place side by side to CETAF/EU BON informatics workshops (see full program and logistic details here). The event will be organised by UEF and Digitarium, EU BON consortium member and work package leader (WP2), in collaboration with CETAF ISTC and other EU BON work packages.

Next topics will be covered:

• Introduction to GEOSS, GEO BON, EU BON (Hannu Saarenmaa)
• Information architecture of EU BON (Antonio Garcia)
• Data standards, Darwin Core and extensions for sample-based quantitative data (Éamonn Ó Tuama)
• Demonstration of GBIF/EU BON IPT for monitoring networks (Larissa Smirnova and Franck Theeten)
• Practical exercise with sample dataset (Larissa Smirnova and Franck Theeten)
• Practical exercise with own data (all trainees)

The workshop will include lectures and hands-on work, so participants are required to bring their own laptops. We will provide information and instructions on software installations. If the participants want to install IPT tool themselves, they can read and learn how to de it here. For the practical exercises it’s recommended to bring  own data (taxonomic, monitoring).

Place and date: Joensuu, Finland, 19 March 2015

Venue: Joensuu Science Park, Digitarium and the Conference Facility "Network Oasis"

To register, please fill in the registration form

Find the event in our calendar here.

A recent paper by Duccio Rocchini et al. (2015) has been classified as the fourth hottest article in Ecological Informatics. The paper is part of the EU BON project, and discusses from a conceptual point of view, the potential of remote sensing in estimating biodiversity using various diversity indices, including alpha- and beta-diversity measurements. 

Abstract:

Many geospatial tools have been advocated in spatial ecology to estimate biodiversity and its changes over space and time. Such information is essential in designing effective strategies for biodiversity conservation and management. Remote sensing is one of the most powerful approaches to identify biodiversity hotspots and predict changes in species composition in reduced time and costs. This is because, with respect to field-based methods, it allows to derive complete spatial coverages of the Earth surface under study in a short period of time. Furthermore, remote sensing provides repeated coverages of field sites, thus making studies of temporal changes in biodiversity possible. In this paper we discuss, from a conceptual point of view, the potential of remote sensing in estimating biodiversity using various diversity indices, including alpha- and beta-diversity measurements.

Original source:

Rocchini D, Hernández Stefanoni JL, He, KS (2015) Advancing species diversity estimate by remotely sensed proxies: a conceptual review. Ecological Informatics, 25: 22-28. doi:10.1016/j.ecoinf.2014.10.006

A new article published in the Journal of Marine Science and Engineering looks at how Aphia, the core platform that underpins the World Register of Marine Species (WoRMS),  can Serve the taxonomic community and the field of biodiversity informatics.

Abstract

The Aphia platform is an infrastructure designed to capture taxonomic and related data and information, and includes an online editing environment. The latter allows easy access to experts so they can update the content of the database in a timely fashion. Aphia is the core platform that underpins the World Register of Marine Species (WoRMS) and its more than 80 related global, regional and thematic species databases, but it also allows the storage of non-marine data. The content of Aphia can be consulted online, either by individual users or via machine-to-machine interactions. Aphia uses unique and stable identifiers for each available name in the database through the use of Life Science Identifiers (LSIDs). The system not only allows the storage of accepted and unaccepted names, but it also documents the relationships between names. This makes it a very powerful tool for taxonomic quality control, and also allows the linking of different pieces of information through scientific names, both within the Aphia platform and in relation to externally hosted databases. Through these LSIDs, Aphia has become an important player in the field of (marine) biodiversity informatics, allowing interactions between its own taxonomic data and e.g., biogeographic databases. Some applications in the field of biodiversity informatics encompass the coupling of species traits and taxonomy, as well as the creation of diverse, expert validated data products that can be used by policy makers, for example. Aphia also supplies (part of) its content to other data integrators and the infrastructure can be used to host orphan databases in danger of being lost.

Original Source: http://www.mdpi.com/2077-1312/3/4/1448/htm

The first EU BON Informatics Workshop will take place in Trondheim, Norway from 29 to 31 May 2013. The event aims at discussing the data standards and informatics architecture that will be followed by the EU BON project. The workshop will also focus on highlighting linkages to GEOSS Common Infrastructure and the GEO BON. Among the agenda on the list are also presentation of the plans and operations of the EU BON Helpdesk as well as the first assembly of the global Informatics Task Force of EU BON. The workshop is by invitation only. The agenda and travel details have been updated on 2 May 2013, see the below attachment.

Biodiversity Informatics Horizons 2013 (BIH2013) is part of a continuing process that helps to structure and organise the biodiversity informatics community at the European level and beyond. BIH2013 will take place over 3 full days, from lunchtime on Tuesday 3rd September to lunchtime Friday 6th. The venue will be in Rome but is still awaiting final confirmation.

To respond to the challenges and priorities of the next decade in biodiversity and ecosystems research, structuring bottom-up and top-down interactions on informatics and cooperating across the community is now an essential activity. Cooperation avoids unnecessary duplication of activity. It helps to maximise and focus effort on building the information resources, tools and infrastructure the scientists and policymakers need. We all know the importance of this as we face environmental, societal and human health challenges on global scale. Science in support of policy to mitigate biodiversity loss due to climate and other man-made changes, to assure food security, and to combat invasive species (to give just a few examples) can only be achieved by full integration of the biodiversity research community through a commonly-shared, sustainable e-infrastructure across all sub-disciplines that reliably serves science and society alike. Hence, the need to coordinate.

Invited speakers will review challenging areas and promising technologies in biodiversity informatics, pathways to sustainable implementation and changing the community culture. A panel discussion with experts from regions of the world beyond Europe will explore opportunities for international cooperation that lead towards a sustainable global infrastructure. Demonstration and training activities, provided by some of the FP7 projects associated with the conference will allow delegates to see first-hand some of the new and exciting infrastructure building blocks that will come together to deliver the LifeWatch vision.

To read more and register for the conference, please click here.

For early registration conference fee, please register before 31 July.

Place and date: Joensuu, Finland, 17-20 March 2015

Purpose of this meeting is to launch several EU BON products, give a related training workshop, work on upcoming deliverables, and gain synergies by working with CETAF. Registration for the workshop is now open, see below!

More nformation is available here: http://digitarium.fi/en/content/eu-bon-and-cetaf-joint-informatics-workshop

The 10th  International Conference on Ecological Informatics 'Facing Global Change by Sharing Data and Models' wil take place on 24‐28 October 2016 in Dubrovnik, Croatia  

Holli Miller lends years of expertise to her work with Providence

Patricia Ramsdell serves as an oncology project manager at ALKU

Vaishnavi Nagesh is honored for her contributions as a senior data scientist at Mammoth Biosciences

Toronto, ON –  Machine learning and artificial intelligence are poised to revolutionize the way companies do business in the fields of healthcare, transportation, and materials research. With the launch of the new Vector Institute, Toronto is quickly becoming a hub for machine learning development. Following this momentum is a three-part limited edition CIFAR seminar series, […]

Location: Electronic Resource- 

Virginia Bioinformatics Institute Video Case Study

IEEE / Institute of Electrical and Electronics Engineers Incorporated

IEEE / Institute of Electrical and Electronics Engineers Incorporated

1. All the four writ petitions seek identical relief in the nature of a writ of Mandamus directing the respondents to permit the petitioners to avail input tax credit of the accumulated CENVAT credit as of 30th June, 2017 by filing declaration Form TRAN-1 beyond the period provided under the Central Goods and Services Tax Rules, 2017 (hereinafter, the "CGST Rules"). Additionally, petitioners also assail Rule 117 of the CGST Rules on the ground that it is arbitrary, unconstitutional and violative of Article 14 to the extent it imposes a time limit for carrying forward the CENVAT credit to the GST regime. However, all the petitioners have unanimously stated that if the Court were to give directions to the respondents to permit them to file the statutory Form TRAN-1 to avail the input tax credit, they would be satisfied and not press for the relief of challenging the vires of the provisions of the Act.

The national-level council for technical education, All India Council for Technical Education (AICTE), has announced a ‘'COVID-19 National Bio-informatics Online Hackathon For Full Stackers.'' The AICTE COVID-19 Hackathon will be held from April 27 to May 6, 2020. Hackathon is rolled

Dr. Burmeister draws on decades of expertise in her varying roles with the University of Michigan

The importance of noncoding RNA sequences has become increasingly clear over the past decade. New RNA families are often detected and analyzed using comparative methods based on multiple sequence alignments. Accordingly, a number of programs have been developed for aligning and deriving secondary structures from sets of RNA sequences. Yet, the best tools for these tasks remain unclear because existing benchmarks contain too few sequences belonging to only a small number of RNA families. RNAconTest (RNA consistency test) is a new benchmarking approach relying on the observation that secondary structure is often conserved across highly divergent RNA sequences from the same family. RNAconTest scores multiple sequence alignments based on the level of consistency among known secondary structures belonging to reference sequences in their output alignment. Similarly, consensus secondary structure predictions are scored according to their agreement with one or more known structures in a family. Comparing the performance of 10 popular alignment programs using RNAconTest revealed that DAFS, DECIPHER, LocARNA, and MAFFT created the most structurally consistent alignments. The best consensus secondary structure predictions were generated by DAFS and LocARNA (via RNAalifold). Many of the methods specific to noncoding RNAs exhibited poor scalability as the number or length of input sequences increased, and several programs displayed substantial declines in score as more sequences were aligned. Overall, RNAconTest provides a means of testing and improving tools for comparative RNA analysis, as well as highlighting the best available approaches. RNAconTest is available from the DECIPHER website (http://DECIPHER.codes/Downloads.html).

Virginia Bioinformatics Institute Video Case Study

The national-level council for technical education, All India Council for Technical Education (AICTE), has announced a ‘'COVID-19 National Bio-informatics Online Hackathon For Full Stackers.'' The AICTE COVID-19 Hackathon will be held from April 27 to May 6, 2020. Hackathon is rolled

Cham : Springer, 2019.

Cham : Springer, 2020.

Hayden Library - QH507.L47 2014

Hayden Library - QH324.2.S726 2013

Hayden Library - QH324.2.I39 2013

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