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Markup upon Video - towards Dynamic and Interactive Video Annotations

Interactive video is increasingly becoming a more and more dominant feature of our media platforms. Especially due to the popular YouTube annotations framework, integrating graphical annotations in a video has become very fashionable these days. However, the current options are limited to a few graphical shapes for which the user can define as good as no dynamic behaviour. Despite the enormous demand for easy-creatable, interactive video there are no such advanced tools available.

In this article we describe an innovative approach, to realize dynamics and interactivity of video annotations. First we explain basic concepts of video-markup like the generic element model and visual descriptors. After that we introduce the event-tree model, which can be used to define event-handling in an interactive video formally as well as visually. By combining these basic concepts, we can give an effective tool to the video community for realizing interactive and dynamic video in a simple, intuitive and focused way.




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Web Annotation and Threaded Forum: How Did Learners Use the Two Environments in an Online Discussion?




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IRNN-SS: deep learning for optimised protein secondary structure prediction through PROMOTIF and DSSP annotation fusion

DSSP stands as a foundational tool in the domain of protein secondary structure prediction, yet it encounters notable challenges in accurately annotating irregular structures, such as β-turns and γ-turns, which constitute approximately 25%-30% and 10%-15% of protein turns, respectively. This limitation arises from DSSP's reliance on hydrogen-bond analysis, resulting in annotation gaps and reduced consensus on irregular structures. Alternatively, PROMOTIF excels at identifying these irregular structure annotations using phi-psi information. Despite their complementary strengths, previous methodologies utilised DSSP and PROMOTIF separately, leading to disparate prediction methods for protein secondary structures, hampering comprehensive structure analysis crucial for drug development. In this work, we bridge this gap using an annotation fusion approach, combining DSSP structures with beta, and gamma turns. We introduce IRNN-SS, a model employing deep inception and bidirectional gated recurrent neural networks, achieving 77.4% prediction accuracy on benchmark datasets, outpacing current models.




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[ Z.103 (10/19) ] - Specification and Description Language - Shorthand notation and annotation in SDL-2010

Specification and Description Language - Shorthand notation and annotation in SDL-2010




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[ Z.103 (06/21) ] - Specification and Description Language - Shorthand notation and annotation in SDL-2010

Specification and Description Language - Shorthand notation and annotation in SDL-2010




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Peak Filtering, Peak Annotation, and Wildcard Search for Glycoproteomics [Research]

Glycopeptides in peptide or digested protein samples pose a number of analytical and bioinformatics challenges beyond those posed by unmodified peptides or peptides with smaller posttranslational modifications. Exact structural elucidation of glycans is generally beyond the capability of a single mass spectrometry experiment, so a reasonable level of identification for tandem mass spectrometry, taken by several glycopeptide software tools, is that of peptide sequence and glycan composition, meaning the number of monosaccharides of each distinct mass, for example HexNAc(2)Hex(5) rather than man5. Even at this level, however, glycopeptide analysis poses challenges:  finding glycopeptide spectra when they are a tiny fraction of the total spectra; assigning spectra with unanticipated glycans, not in the initial glycan database; and finding, scoring, and labeling diagnostic peaks in tandem mass spectra.  Here we discuss recent improvements to Byonic, a glycoproteomics search program, that address these three issues. Byonic now supports filtering spectra by m/z peaks, so that the user can limit attention to spectra with diagnostic peaks, for example, at least two out of three of 204.087 for HexNAc, 274.092 for NeuAc (with water loss), and 366.139 for HexNAc-Hex, all within a set mass tolerance, for example, ± 0.01 Daltons. Also new is glycan "wildcard" search, which allows an unspecified mass within a user-set mass range to be applied to N- or O-linked glycans and enables assignment of spectra with unanticipated glycans. Finally the next release of Byonic supports user-specified peak annotations from user-defined posttranslational modifications. We demonstrate the utility of these new software features by finding previously unrecognized glycopeptides in publicly available data, including glycosylated neuropeptides from rat brain.




annotation

Biblia. Concordantiae in eadem, ex tum Veteri, tum Nouo Testamento, sacrisq[ue] canonibus: necnon & ex uiginti Iosephi De antiquitatibus, & Bello Iudaico libris excerptae. Annotationes ex sacris scriptoribus sumptae, & suis quaeq[ue] locis, &a

Lugduni : apud Hugonem à Porta, M. D. X L VI. [1546]




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Alfresco introduces secure enterprise viewer for annotations

The Enterprise Viewer enables users to view all types of content (documents, images, audio and video) and collaborate using powerful editing tools and chat windows




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REAL-TIME DOCUMENT ANNOTATION

Aspects of the present disclosure relate to systems and methods for receiving, managing, and displaying annotations on documents in real-time. A user (e.g., an author of a document) uploads a document into a real-time annotation system, which may then generate a composite presentation based on the uploaded document. The composite presentation includes all the content of the document presented in a specially configured graphical user interface to receive and manage annotations from a plurality of user devices.




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Joint Multi-Dimensional Model for Global and Time-Series Annotations. (arXiv:2005.03117v1 [cs.LG])

Crowdsourcing is a popular approach to collect annotations for unlabeled data instances. It involves collecting a large number of annotations from several, often naive untrained annotators for each data instance which are then combined to estimate the ground truth. Further, annotations for constructs such as affect are often multi-dimensional with annotators rating multiple dimensions, such as valence and arousal, for each instance. Most annotation fusion schemes however ignore this aspect and model each dimension separately. In this work we address this by proposing a generative model for multi-dimensional annotation fusion, which models the dimensions jointly leading to more accurate ground truth estimates. The model we propose is applicable to both global and time series annotation fusion problems and treats the ground truth as a latent variable distorted by the annotators. The model parameters are estimated using the Expectation-Maximization algorithm and we evaluate its performance using synthetic data and real emotion corpora as well as on an artificial task with human annotations




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Human and AI annotations aim to improve scholarly results in COVID-19 searches

Seed funding provided by the Huck Institute of the Life Sciences and the Institute for Computational and Data Science is supporting two research teams from the College of Information Sciences and Technology in their efforts to provide faster and more efficient search results to COVID-19 research queries.




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Advance Annotation error

Hello all,

We are designing a backplane and in the design we are using some custom prefixes using the Advance Annotation tool. When annotating the occurances I get the following error:

ERROR(ORDBDLL-1224): The total number of components for prefix J0C exceeds the range supplied for it.
Increase the End value of the range.

Thanks in advance for the help

--Tom




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Quest InTrust Annotation Objects Uninitialized Pointer

This Metasploit module exploits an uninitialized variable vulnerability in the Annotation Objects ActiveX component. The activeX component loads into memory without opting into ALSR so this module exploits the vulnerability against windows Vista and Windows 7 targets. A large heap spray is required to fulfill the requirement that EAX points to part of the ROP chain in a heap chunk and the calculated call will hit the pivot in a separate heap chunk. This will take some time in the users browser.




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Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention: International Workshops, LABELS 2019, HAL-MICCAI 2019, and CuRIOUS 2019, held in conjunction with MIC

Online Resource




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[ASAP] CycloBranch 2: Molecular Formula Annotations Applied to imzML Data Sets in Bimodal Fusion and LC-MS Data Files

Analytical Chemistry
DOI: 10.1021/acs.analchem.0c00170




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The commentaries of D. García de Silva y Figueroa on his embassy to Shah Abbās I of Persia on behalf of Philip III, King of Spain / translated from the original Spanish manuscript by Jeffrey S. Turley; edited, with an introduction and annotations, b

Rotch Library - DP183.9.S54 A3 2017




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An anthology of published & unpublished writings with annotations by the author, 1993 to 2018 / Hassan Khan ; editor: Philippe Pirotte

Rotch Library - BH39.K53 2019




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Comparison of the effects of training In expository text structure through annotation textmarking and training In vocabulary development on reading comprehension of students going Into fourth grade




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The effects of multimedia annotations on L2 vocabulary immediate recall and reading comprehension